ENST00000427471.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000427471.1 |
Source |
Gencode19 |
Same with |
lnc-DDX20-2:2,NONHSAT005213 |
Classification |
intronic(AS) |
Length |
583 nt |
Genomic location |
chr1+:112452270..112453553 |
Exon number |
3 |
Exons |
112452270..112452515,112452745..112452935,112453408..112453553 |
Genome context |
|
Sequence |
000001 CCATTCCAGA AACAGAAAAG GAAAAGTCCT GTTGTCAAGA CCTCCAAGGA CAAGAACCAG TGAAGCCTGG TAACAAACAC 000080
000081 ATTATGCTTT GAAGATCTGC CAGTTAACAG CTGTGTGGTC TCTCTCCGAT TAACATCTCT CAGCCCTTTT TTCACCTTTA 000160 000161 TGAGATGGGG ATTATAATAC CACATCCCTT GTAGGGCCAT TGTGAGGATT GAATGAGCTA ATGCATGCCC ACGTGCCCAC 000240 000241 CTCATGGTGG GAGCAAGCCA TTGCCTCCCC CTCAGAGGAC CCAGTGGAGA GAAGGTTGAC AGCTTGGCAT TCTCTTTGGA 000320 000321 ATGGCTGTTG ACTTCGCACT GCCATCCACA GAAGAGCTCC ATAACCCCAC CCAAGGGCAC GGAATGGCCT TTCCTTAAAG 000400 000401 GTGAAGCACA ACATCATTCT CAAGTGCCTT TGCAAATAAC GAAGACCAGA ACTGGTCATT TACCCAGGCC GAGCCAGACC 000480 000481 TATATGATAC ATCAAAAGCA GAACAGAAAG AAAGGGAATG AGAGAATCCA AATGAGTTTA TTTGTCCATT AAATAAATAT 000560 000561 GCAAAATTAT GCAGATGTGG AAA |
Predicted Small Protein
Name | ENST00000427471.1_smProtein_320:397 |
Length | 26 |
Molecular weight | 2697.9939 |
Aromaticity | 0.08 |
Instability index | 55.456 |
Isoelectric point | 4.62506103516 |
Runs | 5 |
Runs residual | 0.00830188679245 |
Runs probability | 0.02176293941 |
Amino acid sequence | MAVDFALPSTEELHNPTQGHGMAFP |
Secondary structure | LEEEELLLLHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |