ENST00000427276.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000427276.1 |
Source |
Gencode19 |
Same with |
lnc-CCDC90A-2:1,NONHSAT107830 |
Classification |
intergenic |
Length |
3152 nt |
Genomic location |
chr6-:14280358..14285376 |
Exon number |
2 |
Exons |
14280358..14283419,14285287..14285376 |
Genome context |
|
Sequence |
000001 AGAACTGGTG AGTCCCTGTA GCAGGTGACA CCAAGAACCA ATGAGCCATA TTTGCTCTTC ACACCTCAAC AAAGATGCTG 000080
000081 CTTCCAGGAG ATCTGCAAGA ACTCTGAACT CATAGATTAT GTCCAAACTG AGAAGCACTG GACAGTCATT TTGCTTATCT 000160 000161 GCGGTTTCTC ATTTCTGAGA AGAATCTCCA TATGGACATT ATCACTTTTG TTATAATCTC GAGGATGGTT AAGGTAGCTT 000240 000241 TGATCGCCAC TTTCATATCT CCTGTGATAA TCAGCACCAA TGGAATGTGC AGAAATCCAT CCCTATTCCT AAGGACTCCT 000320 000321 GATGTCATCT CACCAGGTGG GACGGTTTGT CCTGCTCGAG TCTGCACGCC CAGCTCCAAC AGCTTCGCCC AAGTTTGGGG 000400 000401 ACAGGCTTCA CCCAACACCC AGAATCTGTG CAGTTATTTG GCCCCTCATT GAAAAGCCTC TCACGGTTAC AGACAAAATT 000480 000481 AACTTGGTCA TCCCTGCAGC GCCGGAGGGA TACTTCTGGA CTCTCTGTTT GGGGAGTGTA CGCTCAAACC GTTTCAAGAA 000560 000561 GAGATTTAAA CCTCTTCTTG GAGAAGACTG AGGCTGGCAC AAGGCTAACA AATCAAATAA CTGCACCGAG GCAAAGCTGC 000640 000641 CGTCTCTCCC GGGCTGTACC CTGCCTGCTT CTCCCATCCC TGCCTTCTGG CCGATTTGTC TTTAAGGTTT TAGCATTATC 000720 000721 CCTCTGTTGA CAAATGAATG CTTTTCTGGA AGATGAGGTA TTTCCAGAAG CAGGCAGACA CTGGCTGGAG CGCCGTAAGA 000800 000801 GCTCTGCCTC CCTCGATTCG TTATGTGAAC GGGAGAGGCC TGGAGGTTTT GCGCGAGCAT TACGTTCAAG GTGATGATAA 000880 000881 ATGGAGTCTG GCCGGGGTGG TAATAAGGGA ATTTCTAGCC AGATCCTGTC TAGACCACGG TTTGTTATGG AGGGAAAGCC 000960 000961 ACAAAAGGGG GCTATAGTAC CCCGTTCCTC AGAGAAATTG TCCTCAGGGA GAGCCAAGCA CATTTCCAGT CCGAACCTTC 001040 001041 GTCCGGCCCC TCACTGGGGC CGCTGTAAAT AACATTAGCC TGTCTTTCAG CAAGCTCTGG GAAGCTTATA AACCGAACAC 001120 001121 GGTTTTTGTT GTCTGTAGTT GTGCATTAAG CTCAGTACTG TCAAGTCTAA TTATTCTCAT TAAGGCCTGA AAGTTTTAGG 001200 001201 GATTAATTAA GCAGAGAGCC AAAGCTTATG CAGAACAGCA ATATTTTCCC CCTGAAGGAT TAGCCCGTCA TTCTGATGGG 001280 001281 GTTTTCCTTG AGCGTTGCCC ATTACTTTAT AAGATAGCAA AGTGTGGAGC TCATATAATA TGGATTAGAA ATCGCCTACA 001360 001361 TTTCACATGT GCTATTCAGC CATGAAAATA AGTCCTGGCC CTTGTGCCTG TAACCCGGAA GGCTCACTAA TGAGAACCAG 001440 001441 GCAGTGGGGC TAATGAGAAA TTCAATACGT GCCGTCTCTC CTTCCCGTTT CCTTTCAATT TACTTTCTAC AGGAGCCAAT 001520 001521 ATGTGTAGGA AAAGTCTGAG TGGATGCTGG TATTCTCCTC TTTACCTGGT AGGGATCTTA GAAATTATCT GATTCTAGTC 001600 001601 CTTCTTGCTA TAGAAGTGAA AACTGGGATT CAGCAACCTG CTTAAAGGGA CCCAGTTAAT GGCAAAGCTA CTTGAAGAGA 001680 001681 AGGTGACAGG AAACTTCAGG AGGTGTAGAC AATCATTAGG TACATTAGGA TGGTGAGGGT ACTTAGTCTT AGGTTTTGGT 001760 001761 GTGATGGAAA ATGCCGCAGA AATGAGAAGG TCCCACAATG AAAGGAGGAT GCTGGTGAGG ACCTAATTTG CAGACGAGCC 001840 001841 CCAGGAACTC TGGTGCCCTG CTTGGCAAAG GATTTCAAGG CTTCCTGGAG AAATGGGGGT AGGGGGAGGG ATCGTTAAGC 001920 001921 CCTGGCACCC CAGATATAAA AAGGAAAGTC AGACGTGGGT AATCACCCTG TCTTCACCCA GCAGCTCCAG TTTTCAGCAA 002000 002001 GGCAGAGGGG ACACTTCTGC CTTCAGTCTC CCCTACTTCA CATCAAGGCG CCGTTGCATT TGATGGCTCG GGACGCGGCC 002080 002081 TTCCTGCCTC CCACACTCCC AAATCCATGC CTTGTTTATC TTTTTAGAAT GGATCTCTGA TGCCTGCCCA CCACGCGGCT 002160 002161 GGAGTGGCGC CAGCATCCCC AGGGCACGTC TGTGATGACC GATGAGGTCC ACCACCTCTA CCCCAGACCC TCCCATACCC 002240 002241 AAAGGCTCCC TCTGCCCAGT GAAGTCCCCT TCGCCCCAGC ATTCCTGCAC CAGGCACATC CCAAGGGTGG CCCCGTGTCC 002320 002321 TGCAGGTGGC AGGAGAGTGC ACCCTCCTCA GACACCAGTC TGATATGTCA CCAGGAGAGA GCGGGCGGTC CTCAGTGTAT 002400 002401 GCTCTTTTCT TGTCTCTGGG GAGCTTGTTT TGGCTCCTCA AGAAGACCTT GGAAAAAGCA CAGGTTGTAG AGGCGGCATT 002480 002481 CGCCGGGCAG AACCATGTCC CAAGACAACT GGTTAGTGAG GCCAGGCGTG ACAATCATAA TCGGAGCAGC AACTGTGCAA 002560 002561 TGGCATAGGC AAAGGGGGCC GAAGGCGCAG CAGCCACCAC CATTATAGTC AGACTGGGCA CCGTTTCCTA AATGTCACAC 002640 002641 ATCCTTCCAG CCCCTTGATC TTTGCTTATG AAAAGGGTCA TTCCCTCTAC AATCCTCTAG AACTCTTTGT AGGTTTTTGT 002720 002721 TTGTTTTCCA AACACTGTAC TTGCTTCTTT ATCTGTCTCT CTATGAACCG TGAGTCCCAG AGGACCTCGT GGTCCTCAAT 002800 002801 TATCCTTGCT TCTCTGTGGC CTGTGCCATG GGGCTGAATG TTTGTAGCCC CCAGAATCCA TATGTGGAAG CCCTAATCCC 002880 002881 CACTGTGCTG GTATTAGGAG GTGGGGCCTT TGGGATGTGA TTAGGGTTAG ATGAGGGCAT GAGGGTGGGG CCCTCATAAT 002960 002961 GAGATTAGTG ACCTTATCAA GAGGATGAGA CACTAGATCC CTTGCTCCCT CTCTGCCTGC AATCACCAGT GAAAGGCCAA 003040 003041 GTGAGGACAT AATAGAAGCC ATCCCTTCCC AGAACCCAGC CATGCTGGCA CCCTGATCTC TAGCTTCTCA GCCTCCAGAA 003120 003121 CTGTGAGAAA TAAATGTCTG TTGTCTACTC CA |
Predicted Small Protein
Name | ENST00000427276.1_smProtein_191:451 |
Length | 87 |
Molecular weight | 9224.7319 |
Aromaticity | 0.0697674418605 |
Instability index | 43.9348837209 |
Isoelectric point | 8.93499755859 |
Runs | 22 |
Runs residual | 0.116192294342 |
Runs probability | 0.0248149218738 |
Amino acid sequence | MDIITFVIISRMVKVALIATFISPVIISTNGMCRNPSLFLRTPDVISPGGTVCPARVCTP SSNSFAQVWGQASPNTQNLCSYLAPH |
Secondary structure | LLEEEEEEEELLLHHHEELEELLLEEEELLLLLLLLLLEELLLLEELLLLEEELLEEELL LLLLLLEEEEELLLLLHHHHHHLLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiii |