ENST00000427276.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000427276.1

Source

Gencode19

Same with

lnc-CCDC90A-2:1,NONHSAT107830

Classification

intergenic

Length

3152 nt

Genomic location

chr6-:14280358..14285376

Exon number

2

Exons

14280358..14283419,14285287..14285376

Genome context

Sequence
000001 AGAACTGGTG AGTCCCTGTA GCAGGTGACA CCAAGAACCA ATGAGCCATA TTTGCTCTTC ACACCTCAAC AAAGATGCTG 000080
000081 CTTCCAGGAG ATCTGCAAGA ACTCTGAACT CATAGATTAT GTCCAAACTG AGAAGCACTG GACAGTCATT TTGCTTATCT 000160
000161 GCGGTTTCTC ATTTCTGAGA AGAATCTCCA TATGGACATT ATCACTTTTG TTATAATCTC GAGGATGGTT AAGGTAGCTT 000240
000241 TGATCGCCAC TTTCATATCT CCTGTGATAA TCAGCACCAA TGGAATGTGC AGAAATCCAT CCCTATTCCT AAGGACTCCT 000320
000321 GATGTCATCT CACCAGGTGG GACGGTTTGT CCTGCTCGAG TCTGCACGCC CAGCTCCAAC AGCTTCGCCC AAGTTTGGGG 000400
000401 ACAGGCTTCA CCCAACACCC AGAATCTGTG CAGTTATTTG GCCCCTCATT GAAAAGCCTC TCACGGTTAC AGACAAAATT 000480
000481 AACTTGGTCA TCCCTGCAGC GCCGGAGGGA TACTTCTGGA CTCTCTGTTT GGGGAGTGTA CGCTCAAACC GTTTCAAGAA 000560
000561 GAGATTTAAA CCTCTTCTTG GAGAAGACTG AGGCTGGCAC AAGGCTAACA AATCAAATAA CTGCACCGAG GCAAAGCTGC 000640
000641 CGTCTCTCCC GGGCTGTACC CTGCCTGCTT CTCCCATCCC TGCCTTCTGG CCGATTTGTC TTTAAGGTTT TAGCATTATC 000720
000721 CCTCTGTTGA CAAATGAATG CTTTTCTGGA AGATGAGGTA TTTCCAGAAG CAGGCAGACA CTGGCTGGAG CGCCGTAAGA 000800
000801 GCTCTGCCTC CCTCGATTCG TTATGTGAAC GGGAGAGGCC TGGAGGTTTT GCGCGAGCAT TACGTTCAAG GTGATGATAA 000880
000881 ATGGAGTCTG GCCGGGGTGG TAATAAGGGA ATTTCTAGCC AGATCCTGTC TAGACCACGG TTTGTTATGG AGGGAAAGCC 000960
000961 ACAAAAGGGG GCTATAGTAC CCCGTTCCTC AGAGAAATTG TCCTCAGGGA GAGCCAAGCA CATTTCCAGT CCGAACCTTC 001040
001041 GTCCGGCCCC TCACTGGGGC CGCTGTAAAT AACATTAGCC TGTCTTTCAG CAAGCTCTGG GAAGCTTATA AACCGAACAC 001120
001121 GGTTTTTGTT GTCTGTAGTT GTGCATTAAG CTCAGTACTG TCAAGTCTAA TTATTCTCAT TAAGGCCTGA AAGTTTTAGG 001200
001201 GATTAATTAA GCAGAGAGCC AAAGCTTATG CAGAACAGCA ATATTTTCCC CCTGAAGGAT TAGCCCGTCA TTCTGATGGG 001280
001281 GTTTTCCTTG AGCGTTGCCC ATTACTTTAT AAGATAGCAA AGTGTGGAGC TCATATAATA TGGATTAGAA ATCGCCTACA 001360
001361 TTTCACATGT GCTATTCAGC CATGAAAATA AGTCCTGGCC CTTGTGCCTG TAACCCGGAA GGCTCACTAA TGAGAACCAG 001440
001441 GCAGTGGGGC TAATGAGAAA TTCAATACGT GCCGTCTCTC CTTCCCGTTT CCTTTCAATT TACTTTCTAC AGGAGCCAAT 001520
001521 ATGTGTAGGA AAAGTCTGAG TGGATGCTGG TATTCTCCTC TTTACCTGGT AGGGATCTTA GAAATTATCT GATTCTAGTC 001600
001601 CTTCTTGCTA TAGAAGTGAA AACTGGGATT CAGCAACCTG CTTAAAGGGA CCCAGTTAAT GGCAAAGCTA CTTGAAGAGA 001680
001681 AGGTGACAGG AAACTTCAGG AGGTGTAGAC AATCATTAGG TACATTAGGA TGGTGAGGGT ACTTAGTCTT AGGTTTTGGT 001760
001761 GTGATGGAAA ATGCCGCAGA AATGAGAAGG TCCCACAATG AAAGGAGGAT GCTGGTGAGG ACCTAATTTG CAGACGAGCC 001840
001841 CCAGGAACTC TGGTGCCCTG CTTGGCAAAG GATTTCAAGG CTTCCTGGAG AAATGGGGGT AGGGGGAGGG ATCGTTAAGC 001920
001921 CCTGGCACCC CAGATATAAA AAGGAAAGTC AGACGTGGGT AATCACCCTG TCTTCACCCA GCAGCTCCAG TTTTCAGCAA 002000
002001 GGCAGAGGGG ACACTTCTGC CTTCAGTCTC CCCTACTTCA CATCAAGGCG CCGTTGCATT TGATGGCTCG GGACGCGGCC 002080
002081 TTCCTGCCTC CCACACTCCC AAATCCATGC CTTGTTTATC TTTTTAGAAT GGATCTCTGA TGCCTGCCCA CCACGCGGCT 002160
002161 GGAGTGGCGC CAGCATCCCC AGGGCACGTC TGTGATGACC GATGAGGTCC ACCACCTCTA CCCCAGACCC TCCCATACCC 002240
002241 AAAGGCTCCC TCTGCCCAGT GAAGTCCCCT TCGCCCCAGC ATTCCTGCAC CAGGCACATC CCAAGGGTGG CCCCGTGTCC 002320
002321 TGCAGGTGGC AGGAGAGTGC ACCCTCCTCA GACACCAGTC TGATATGTCA CCAGGAGAGA GCGGGCGGTC CTCAGTGTAT 002400
002401 GCTCTTTTCT TGTCTCTGGG GAGCTTGTTT TGGCTCCTCA AGAAGACCTT GGAAAAAGCA CAGGTTGTAG AGGCGGCATT 002480
002481 CGCCGGGCAG AACCATGTCC CAAGACAACT GGTTAGTGAG GCCAGGCGTG ACAATCATAA TCGGAGCAGC AACTGTGCAA 002560
002561 TGGCATAGGC AAAGGGGGCC GAAGGCGCAG CAGCCACCAC CATTATAGTC AGACTGGGCA CCGTTTCCTA AATGTCACAC 002640
002641 ATCCTTCCAG CCCCTTGATC TTTGCTTATG AAAAGGGTCA TTCCCTCTAC AATCCTCTAG AACTCTTTGT AGGTTTTTGT 002720
002721 TTGTTTTCCA AACACTGTAC TTGCTTCTTT ATCTGTCTCT CTATGAACCG TGAGTCCCAG AGGACCTCGT GGTCCTCAAT 002800
002801 TATCCTTGCT TCTCTGTGGC CTGTGCCATG GGGCTGAATG TTTGTAGCCC CCAGAATCCA TATGTGGAAG CCCTAATCCC 002880
002881 CACTGTGCTG GTATTAGGAG GTGGGGCCTT TGGGATGTGA TTAGGGTTAG ATGAGGGCAT GAGGGTGGGG CCCTCATAAT 002960
002961 GAGATTAGTG ACCTTATCAA GAGGATGAGA CACTAGATCC CTTGCTCCCT CTCTGCCTGC AATCACCAGT GAAAGGCCAA 003040
003041 GTGAGGACAT AATAGAAGCC ATCCCTTCCC AGAACCCAGC CATGCTGGCA CCCTGATCTC TAGCTTCTCA GCCTCCAGAA 003120
003121 CTGTGAGAAA TAAATGTCTG TTGTCTACTC CA
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Predicted Small Protein

Name ENST00000427276.1_smProtein_191:451
Length 87
Molecular weight 9224.7319
Aromaticity 0.0697674418605
Instability index 43.9348837209
Isoelectric point 8.93499755859
Runs 22
Runs residual 0.116192294342
Runs probability 0.0248149218738
Amino acid sequence MDIITFVIISRMVKVALIATFISPVIISTNGMCRNPSLFLRTPDVISPGGTVCPARVCTP
SSNSFAQVWGQASPNTQNLCSYLAPH
Secondary structure LLEEEEEEEELLLHHHEELEELLLEEEELLLLLLLLLLEELLLLEELLLLEEELLEEELL
LLLLLLEEEEELLLLLHHHHHHLLLL
PRMN LLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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