ENST00000426459.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000426459.1

Source

Gencode19

Same with

lnc-OPA1-1:2,NONHSAT094011

Classification

antisense

Length

795 nt

Genomic location

chr3+:193271201..193272701

Exon number

3

Exons

193271201..193271293,193271496..193271556,193272061..193272701

Genome context

Sequence
000001 GAGAGAGAAA AAAAATGTTT CAGAGGAAGG AGCCCCTGCC TTCTGGTGAA GAGTATTCAA GATGAAGATA AACTTTTCAA 000080
000081 CTTAATATCG AGACTTTGAT AGCAGAAGGG ATCTACTCTT GAAAGTCCAA AAAATGTTGT TGCTATAGGA ACAGACTCGG 000160
000161 TGAACAAGAC ATTTGAGAAG AGAAGGTCAA AGACCCAGCT GCACTTCTGC TTCACTGCTG AACTTCTGCT TCTTCCTATC 000240
000241 AGGGAATACA CTGCTCCTCA CATTAGGGAT TTCCTAAAAT TGTTAGGTGT TTTGAACAGA ACTGGCTATA CCAATGAGGC 000320
000321 TCAAACAAGA ATCATAAAGT GCATGGTGCT TCTCTCCCTC TCTGTTTTCT TTAAAAAGAA AACATTCTTG ACAAGATGAA 000400
000401 TACAATATTT TCATTCTAGC AAATTTCTGC TGTCAGAGGT TATATTTACA GGATAGAGAG ATTTCTCAAA CATGACCTTT 000480
000481 TCTCGTGTAA TACCAGAGTG AAATTTTAGA AAAGTCTGTG TGTGTGTGAT GCGTGCGTGT GTGTGTGTGT GTGTGTGTGT 000560
000561 GTGTGTGTGT CTCGCAGGCT GAGAAGTGGG ATGGGAAGAA GGGAATGTGG CTAGAATCTT ACCATCTCAT TCTCTTCTCC 000640
000641 TTCATTGAGC AGAGCGTGCT GGCCCTTCTC AAAGTGTCCC ATGAAAAAGT TATTCCACAC CTCCTCCCTG ACCTTGTCGT 000720
000721 GCAGACGCTT CCAGGATGAA CTCCAACTCG CCGAGCCACC GCAGCTCCTC AGCTGACTAA AAGAGTTAAT GATCC
[back to top]

Predicted Small Protein

Name ENST00000426459.1_smProtein_680:775
Length 32
Molecular weight 3618.1886
Aromaticity 0.0645161290323
Instability index 75.0806451613
Isoelectric point 7.97808837891
Runs 5
Runs residual 0.0399865591398
Runs probability 0.0340222575517
Amino acid sequence MKKLFHTSSLTLSCRRFQDELQLAEPPQLLS
Secondary structure LLLEELLLLLLHHHHHHHHHHHHLLLLLLLL
PRMN -
PiMo -