ENST00000424524.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000424524.1

Source

Gencode19

Same with

lnc-BORA-3:2

Classification

intergenic

Length

1236 nt

Genomic location

chr13+:70682044..70705678

Exon number

4

Exons

70682044..70682151,70689273..70689430,70703916..70704016,70704810..70705678

Genome context

Sequence
000001 CGCAGGACCT GGGCGTGGGG ACACCACCAG GCAGGAGCAG AGGCAGGACT GGGACGCCAA AAGCTGAGAA TCCTCGATGC 000080
000081 CCGCGCGAGA GCCCCGTGTT ATGGCGAGTT CTGGAGGCTG GGAAGTTCAA GACCAATGCA CGAGAATTTG GTCTAAAGAG 000160
000161 AATCTTCTTG CTCTGAACAC ACATAGTAGA AGGCAGAAGG GCAAGAGAGA GAACAAAGTC TGTGTCTCCA CATGGCAGAA 000240
000241 GAGCAGAGGA GACAGAACCT ACTCCTCTAT GGCAACCACC CCATCAATGA CAAAAATCCT AGAAGGATGT ATGTATAGGA 000320
000321 AGTTGAAGTG TTGAGAAGAG AATGGCTCAG AGTCAAGCGG GAACAAGATT CAAACTTCAG AGAGAGAGGG AAGAAAAACA 000400
000401 TTTAAATATA TCTGGCATAA TCCAAGACTA TTTACGACAA GTGTTCTGTG TTTCTAATAA TAAAACAGAC TTCACCTCGG 000480
000481 AGTACCTGCA GAACTGGGAC CCCAATGACC AGGGAGAATG AAGAACAACT TGTTGAAGGT ATAGAGAAGG CAGCAAATCA 000560
000561 TACAAGAAGG TCCATCCCAA ACCAGAGATA GTATAGATAA ATCTCTCATG TTAACTATGG AAAAAATAAA GGAAGATGAC 000640
000641 GTATTTTAAT AGAAGGGAAA TTGCGCTTAT TGGGAGTAAG AACACTGAAT TGACTGAATA TCTTAAAGAG AGTTAGGAAG 000720
000721 TGAAATTCTC AACAGGTGAT TATTCTTTGA CCAATTTTGT CTTATCTCTT ATCCACATTC TTCCCTGCTC TTCCCAATAC 000800
000801 ATGTGTAAGA ATATCCAAGG GCACACACAT ACCATAAGCA GGAATGGTGT CCTAAGGAAA GTCAATATAG AGAGTAAGAA 000880
000881 GTATATCTGT CACAATGTGT ACATGTATAC ATCCTAAATA TTTGTACAAT TAATTTACTT CTCTTCATTT CCAACACTCC 000960
000961 TAGTCTATGC TATGAACATC TCTTACCTAA AATGCTACAG ATGTCCCCTA AATTTTTCCA TAAATCAGTT TTTTCCTCTC 001040
001041 CAAGCTGTAA GCAGAAATGC ATTTTTAAAT TGCATATATG ACCGTGACAC GTATCTGTCT CAGTTTATAG AACAGGTCTC 001120
001121 TAACAGGGCC AGCAGCTTCC AGTCACTTCT GTCCCTTACC TTTTCTCCAG TCTCATTTTA CATATTTTTT TACATGCTCT 001200
001201 CTATATTCCT GTAATTAAAT ATTACTTTCC CCTCAA
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Predicted Small Protein

Name ENST00000424524.1_smProtein_971:1213
Length 81
Molecular weight 9484.8818
Aromaticity 0.2125
Instability index 60.45525
Isoelectric point 8.55035400391
Runs 10
Runs residual 0.0138157894737
Runs probability 0.0528351881294
Amino acid sequence MNISYLKCYRCPLNFSINQFFPLQAVSRNAFLNCIYDRDTYLSQFIEQVSNRASSFQSLL
SLTFSPVSFYIFFYMLSIFL
Secondary structure LLLEEEEEEELLLLLLLLLLLHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHH
HHLLLLLEEEEHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LHHHHHHHHHHHHHHHHHHH
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