ENST00000424524.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000424524.1 |
Source |
Gencode19 |
Same with |
lnc-BORA-3:2 |
Classification |
intergenic |
Length |
1236 nt |
Genomic location |
chr13+:70682044..70705678 |
Exon number |
4 |
Exons |
70682044..70682151,70689273..70689430,70703916..70704016,70704810..70705678 |
Genome context |
|
Sequence |
000001 CGCAGGACCT GGGCGTGGGG ACACCACCAG GCAGGAGCAG AGGCAGGACT GGGACGCCAA AAGCTGAGAA TCCTCGATGC 000080
000081 CCGCGCGAGA GCCCCGTGTT ATGGCGAGTT CTGGAGGCTG GGAAGTTCAA GACCAATGCA CGAGAATTTG GTCTAAAGAG 000160 000161 AATCTTCTTG CTCTGAACAC ACATAGTAGA AGGCAGAAGG GCAAGAGAGA GAACAAAGTC TGTGTCTCCA CATGGCAGAA 000240 000241 GAGCAGAGGA GACAGAACCT ACTCCTCTAT GGCAACCACC CCATCAATGA CAAAAATCCT AGAAGGATGT ATGTATAGGA 000320 000321 AGTTGAAGTG TTGAGAAGAG AATGGCTCAG AGTCAAGCGG GAACAAGATT CAAACTTCAG AGAGAGAGGG AAGAAAAACA 000400 000401 TTTAAATATA TCTGGCATAA TCCAAGACTA TTTACGACAA GTGTTCTGTG TTTCTAATAA TAAAACAGAC TTCACCTCGG 000480 000481 AGTACCTGCA GAACTGGGAC CCCAATGACC AGGGAGAATG AAGAACAACT TGTTGAAGGT ATAGAGAAGG CAGCAAATCA 000560 000561 TACAAGAAGG TCCATCCCAA ACCAGAGATA GTATAGATAA ATCTCTCATG TTAACTATGG AAAAAATAAA GGAAGATGAC 000640 000641 GTATTTTAAT AGAAGGGAAA TTGCGCTTAT TGGGAGTAAG AACACTGAAT TGACTGAATA TCTTAAAGAG AGTTAGGAAG 000720 000721 TGAAATTCTC AACAGGTGAT TATTCTTTGA CCAATTTTGT CTTATCTCTT ATCCACATTC TTCCCTGCTC TTCCCAATAC 000800 000801 ATGTGTAAGA ATATCCAAGG GCACACACAT ACCATAAGCA GGAATGGTGT CCTAAGGAAA GTCAATATAG AGAGTAAGAA 000880 000881 GTATATCTGT CACAATGTGT ACATGTATAC ATCCTAAATA TTTGTACAAT TAATTTACTT CTCTTCATTT CCAACACTCC 000960 000961 TAGTCTATGC TATGAACATC TCTTACCTAA AATGCTACAG ATGTCCCCTA AATTTTTCCA TAAATCAGTT TTTTCCTCTC 001040 001041 CAAGCTGTAA GCAGAAATGC ATTTTTAAAT TGCATATATG ACCGTGACAC GTATCTGTCT CAGTTTATAG AACAGGTCTC 001120 001121 TAACAGGGCC AGCAGCTTCC AGTCACTTCT GTCCCTTACC TTTTCTCCAG TCTCATTTTA CATATTTTTT TACATGCTCT 001200 001201 CTATATTCCT GTAATTAAAT ATTACTTTCC CCTCAA |
Predicted Small Protein
Name | ENST00000424524.1_smProtein_971:1213 |
Length | 81 |
Molecular weight | 9484.8818 |
Aromaticity | 0.2125 |
Instability index | 60.45525 |
Isoelectric point | 8.55035400391 |
Runs | 10 |
Runs residual | 0.0138157894737 |
Runs probability | 0.0528351881294 |
Amino acid sequence | MNISYLKCYRCPLNFSINQFFPLQAVSRNAFLNCIYDRDTYLSQFIEQVSNRASSFQSLL SLTFSPVSFYIFFYMLSIFL |
Secondary structure | LLLEEEEEEELLLLLLLLLLLHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHH HHLLLLLEEEEHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LHHHHHHHHHHHHHHHHHHH |
PiMo | i??????????????????????????????????????????????????????????? ???????????????????? |