ENST00000424208.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000424208.1

Source

Gencode19

Same with

lnc-SNURF-3:13,NONHSAT041085

Classification

intergenic

Length

3166 nt

Genomic location

chr15+:25426990..25467432

Exon number

34

Exons

25426990..25427042,25427166..25427252,25427344..25427475,25427859..25427901,25429088..25429222,25430590..25430721,25431107..25431154,25432496..25432626,25433009..25433052,25434370..25434501,25434888..25434931,25436387..25436497,25436864..25436909,25438280..25438556,25438794..25438838,25440394..25440437,25442529..25442660,25443056..25443100,25444409..25444538,25444925..25444970,25446283..25446413,25446799..25446842,25448187..25448317,25448699..25448743,25449317..25449447,25449831..25449875,25456754..25456885,25457271..25457316,25458606..25458737,25459121..25459165,25462360..25462489,25463587..25463711,25464075..25464119,25467306..25467432

Genome context

Sequence
000001 CCTTGGTGGG CCGTGAACTG AATGGTGGCG CTGGCCTGTG CCCAGTATAT CTGGGTTCGG TGGCTGAGAG AGCTTTTGTT 000080
000081 GCCCTGTGTC CGTGACGGGC CAGTGTTCTG CATGCATCCC ATCACATGGA TCCATGGAGG ATGTTGAGCC CAGAGGAAGA 000160
000161 CTTGCACTGG GCCCAATGGC CCCAGGTCAG CGTCCATCAG CCAGGTGTCC AGCCCCTGGT GCACTGAAGA TCGGGCCCTT 000240
000241 CCTGGTGCCC TGGTCTCCTG CATTGAGCTG TGTGAGCTCT TCCACATGGA AGACCCCTGT CATTGACTGG CATAGGGTTC 000320
000321 AGTGGCGGAG AGAGCATCAG GTGGCCCACG TCTGTGATGG GCCAGTATTC CACATGGATC TCATCACATG GGTCCATGGA 000400
000401 AGGCGAGCAT CCCTGAGCTG GCACACCCCA CCTTCTGCCA GCATGGAAGG ATGGTGAGCA CAGAGGAAGA ATTGCGTTAG 000480
000481 GCCCTTTGGC CCCGGACCAG TGTCTGCCAG CCACGTGCTC AGCCTCCCGT GCGCTAAAGC TCAGGTCCTT CCTGTCATCC 000560
000561 TGGTATCCTG CACTGAGGTG TGTGAGCTCT TCCCCCCAGC AGGCCCCCTG GGATTGACTG GCAAAGGTGA ATGGTGTCTG 000640
000641 TGGAGGAAGA CTTGCCATTG GGTTGCTGGC CCCAGGCCAG TGGTTGTCAT CCAGGTGCCC AGCCTTGGTG CACTGAAGCT 000720
000721 CAGGCCCTTC CTGGTGCTCT GGTCTCCTGC ACTGAGCTGT GTGACCTCTT TTGCCCGGCA GACCCCCTGG CATTGACCAG 000800
000801 CATAGATAGT GAGACTGGAA GAAAACTTTC ATTGGGCCCG CTGTCCCGGG GTGAGTGGTC ATCAGTCAGG TGCCCAGCCC 000880
000881 TTGGTGTGGT GAAGCTCAGG CTCTTCCTGG CGCCCTGGTC TCCTGCACGG AGCTGCGTGA GCTCTTCTAC CCAGGCGGGC 000960
000961 CCCTGCCCTT GAGCGGCATA GATGGTGACC CCAGAGGAAG ACTTGCGTTG GGCCCACTGG CTCTGGGCTC AGCCCCTGGT 001040
001041 GAGCTGAAGC TCAGGCCCTT CCTGGCACCC TGGTCTGCTG CACTGAGCTG CGTGAGCTCT TCCACCCAGG TGCAACCCCC 001120
001121 TGGCATTGAC CAGCATAGGT ATTGAGCCTG GAGGAAGACT TGAATTGGTC CCAATGGTCC CAGGCCAGCA TCCATCAGCT 001200
001201 AGGTGCTGAG CCCCTGGTGC ACTGAAGATT GGGCACTTCC TGGCACCCTG GTGTGCTGCA CCGAGCTGTG ATGAGCACAT 001280
001281 CCGGGTCCTG CTGGATGCAT GCGCCGGGAA GGACGTGCCC TGAGTTGGGT CGATGATGAG AACCTTATAT TATCCTGAAG 001360
001361 AGAGGTGATG ACTTAAAAAT CATGCTCAAT AGGATTACGC TGAGGCCCAG TCTAGTGAGC TCTTCCCCAC AGGTGGGCCC 001440
001441 CCTGGCATTG ACTAGCATCG TGAGCTCTTC TGCCCAGCAG CCTCCCTGGC AGTGACCAGC ATAGATGCTG ACCCTGGAGG 001520
001521 AAGAATTGCA CTGGGCCCAC TGGCCCCGGG AAAATGTCCC TCAGCCAGGT GCTTAGCCCC TGGTAATCTG AAGCTCAGGC 001600
001601 CCTTCCTGAT GCCCTGGTCT CCTGCACTGA GCTGTGTGAG CTCTTCAGCC CAGGTGGGCT CCCTGACACT GATGCGCATA 001680
001681 GATGGTGAGC CTGGAGGAAG ACTTGCATTG GGCCCAATGG ACCCAGGCCA GTGGCCATCA GCCAGGTGCC CACCCTGGTG 001760
001761 TGCTGAAGCG CGGGACCTAC CTGTTGTCCT GGTTTCCTAC ACTGAGCTGA GTGAGCTCTT CAACCCAGGC GGGGCACCCT 001840
001841 GGCATTCACC AGCATAGACT GTGAAATGGG AGGAAGAATT GTGTTGGGCC CAATGGCCCT GGGCCAGTAT CCGTCAGCCT 001920
001921 GGTGTCCAGC CCCTGGTGTG CTGAAGCTCA TGCCCTTCCT GGTGCCCTAG TTTCCTGCAC TGAGCTTGTG AGCTCTTTTG 002000
002001 CCCAGAAGAC TCCCTGGCAT TGATCGGCAT AGATGGCAGC GCTGGAGGAG GACTTGTACT GGGGCCGCTG GCCCCACATC 002080
002081 AGTGTCCGTC ATCCCGGCGT CCAGCCCCTG GTGTGCTGAA GCTCAGGCCC TTCCTTGTGC CCTAGTCTCC TGCACTGAGC 002160
002161 TTGTGAGCTC TTCTGCTCAG GCGGGTCCCC TGGCATTGAC CAGCATAGAT GGTGGCCCTG GAGGAGGACT TGTATTGGGG 002240
002241 CCACTGGCCC CACGTCAGTG TTCGTCAGCC TGGCATCCAG CCCCTGGTGT GCTGAAGCTC AGGCCCTTCC TGTTGCCCTA 002320
002321 GTCTCCTGCA CTGAGCTTGT GAGCTCTTCT GCCCAGGTGG TCCCCCTGGT CTTGATGGGC ATAGATGGTG AGCCTGAAGG 002400
002401 AAGACTTGCA TCAGGACCAA TGGACCCTGG CAAGTGTCCG TCAGCCAGGT GCTCAGCCCC TGGTGCACTG AAGCTCAGGC 002480
002481 CCTTCCTGGC CCCTTGATCT CCTGCACTGA GCTGTGTGAG CTCTTCTGCC AAGGGGGGGC CTCCTGGCAT TGACCAACAT 002560
002561 AGATGGTGAG CCTGGAGGAA GATTTGCATT GGGCCCAATG GCCCTGGGCC AGTGTCTGTC AGCCAGTTTC CCAGCCCCTG 002640
002641 GTGCACTGAA GCTCAGGCCT TTCCTGGCAT CCTGGCCTCC TGCACTGAGC TGTGTGAGTG CTTCTGCCCA GGCAGGCCAC 002720
002721 TTGGCATTGA CCGGTATAGA TGGTGAGCCT GGAGGAAGAT GTGTGGGACC CGCAGGCCGA GGGCCAGTGT CTCTCAGCCA 002800
002801 GGTGCTCAGC CCCCAGTGGG CTGAAACTCT GACCCTTCCT GGCACCCTGC TCTCCTGCAC TGTGCTGTGA TGGTGAGACT 002880
002881 TCTGTTGGGC TTGCTTTTCC TGGGCCAGTG TCCATCAGCC AGGTGCTCAG CCATCGGTGC GCTGAAGCTC CAGCCCTTCC 002960
002961 TGGTGCCCTG ATCTCCTGCA CTGAGCTGTG ATGATGAGCT CTTTCACCTA GGAGGGCCCC TTGGCATTGA CTGGCATAGA 003040
003041 TGGTGACCCT GAAGAAAGAC TTCAGTTGGG CCTGAAGGCC CCGGGCCAGT GTCCATCATC CAGGTGCTCA GCTCCCAGTG 003120
003121 CACTGAAGCT CAGACCCTTC CTGGTTCCCT GGTCTCTTGC ACTGAG
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Predicted Small Protein

Name ENST00000424208.1_smProtein_2597:2869
Length 91
Molecular weight 8982.3714
Aromaticity 0.0444444444444
Instability index 47.0744444444
Isoelectric point 7.68792724609
Runs 15
Runs residual 0.0268077601411
Runs probability 0.0473532355886
Amino acid sequence MALGQCLSASFPAPGALKLRPFLASWPPALSCVSASAQAGHLALTGIDGEPGGRCVGPAG
RGPVSLSQVLSPQWAETLTLPGTLLSCTVL
Secondary structure LLLLLEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHLHHHHLLLLLLLLLLEELLLL
LLLEEEEEELLHHHHHHLLLLLLEEEEEEL
PRMN -
PiMo -