ENST00000422730.2

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000422730.2

Source

Gencode19

Same with

lnc-CALCOCO2-2:1

Classification

intergenic

Length

1276 nt

Genomic location

chr17+:46800530..46802819

Exon number

2

Exons

46800530..46800675,46801690..46802819

Genome context

Sequence
000001 GGCCCGGGGC CGCTCCCGAG CTTTCTCCCC TCTTCCCTGG AGAGCGACTG TTCGGGAGGG TGAGAATGGT ATAAATTTCA 000080
000081 AAAACAACGA AACCTTCTTT TGCCCCCTCC GCAGCAGTCG CCTCCGGGCT TTATTGCAAG TTTACGGTTC CATACAAGTA 000160
000161 AATCCGAAAA AAAGTGTGTG TGGGGGGGTC CACACCACTA ATTATTATGG CGAGGAAGAT AAAGAAGACA TGGACAGAAG 000240
000241 GCGGATGGCT CTGCGGCCTG GCTCCCGCAG ACCGACCGCC TTCTTCTTCC ATTCGAGATG GCTCGTACCG AACCTCCTTG 000320
000321 CCTTCTTCCT GGGTCTCTCG GGGGCTGGAC CAATACATCT GCCGATGCCC TGGCCGAATG GCAGGCGACA TCGGGTCCTG 000400
000401 GACCCCCACA CGCAGCTCAG TACCCACGAG GCCCCAGGCC GCTGGAAGCC TGTAGCTCCG CGGACGATGA AAGCCTGCCC 000480
000481 GCAGGTTCTC CTGGAGTGGT GAGCCTCTGT CGGAAGGGGG CGCCCACGTC TTTTTAATGG TCCTAACACA CCAGTGGAAT 000560
000561 AAATCTCTAA GATTCCACAT CTTTTGTTTG CTCTGAATTT ATTGCGAGTG AAAAACAGAG AAAATCCTCA AGTTTAAGTT 000640
000641 TCTGATAGCA GAGTGTGGGA GTTAGAGCAT GGGGAGTCCA GAGGTTCCAG ACCCCCAAAG GTCTCTACCA GGGCCATCTC 000720
000721 CGTTAGTGGC GGTGGCAGCC CCTCTTGTGG CCTTTTTCCT CTCTCCAAGG GGTCACCCCG CACCATGCCG CTCCCCCTCA 000800
000801 TCTATCTTGC CCCCTCCCCA CAGGCCCATC TGCGCTGAAC TCTCGCCAGT TCCGAAGTCG GCGAGGGAGG GGGTTTACTT 000880
000881 GCCCGATCGT TGGTGGGTTT GAGCTTATAG AGGCAGAGGA GTAAGAACCT GCGATATTGA AAGCTACCCA CATGGGGCTT 000960
000961 CCTTGAAGGA GGACGTGGAA GGCAGAAAGT GACCTGCTCT GAGCGGCGCA TGTAACCGAG GACCTTAAGC TGGACCACGG 001040
001041 GGCTTGGACG ATTTTTTAAA TCAGGAAATC GACCTCATCT TCCTCCTCCT CGTCCTCTTC CCCTGAACCC CCAGTCCGCA 001120
001121 TGCACTCACA CTCTTTGGCC TTTTCCCTCA GTCCCGGGCT CCTCTTTGGT AAATAGATTT GTAGGTGTCT AAGTCACGTC 001200
001201 CCACCCTCAC TCCTTCCCAG GAGAGGAGAC AGGGCTAGGA TCCCACCCGA CCGCGGGCCA TAAACACTTG GCTGCG
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Predicted Small Protein

Name ENST00000422730.2_smProtein_206:454
Length 83
Molecular weight 8882.0143
Aromaticity 0.0731707317073
Instability index 48.1134146341
Isoelectric point 10.1920776367
Runs 9
Runs residual 0.0261456023651
Runs probability 0.0182829888712
Amino acid sequence MARKIKKTWTEGGWLCGLAPADRPPSSSIRDGSYRTSLPSSWVSRGLDQYICRCPGRMAG
DIGSWTPTRSSVPTRPQAAGSL
Secondary structure LLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLEEEELLLLLLL
LLLLLLLLLLLLLLLHHHLLLL
PRMN -
PiMo -