ENST00000422494.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000422494.1 |
Source |
Gencode19 |
Same with |
lnc-FOXA2-1:4,NONHSAT078998 |
Classification |
intergenic |
Length |
659 nt |
Genomic location |
chr20-:22568160..22588155 |
Exon number |
3 |
Exons |
22568160..22568426,22569830..22570049,22587984..22588155 |
Genome context |
|
Sequence |
000001 ATGAAGAAAC AGAGGGATAT ACTGCCGTCT TAAACCAACC CAAATGCCTC TGCCGCAGTC GCAGTTATTT AGGGTGGAGA 000080
000081 AGCGGGCTCT GGCAACTAGA GAAGGTGGCC GCAGCATGGG GACACCCGAA TTGAGGAGCT GTTTGGGCAA TAAGCTGATT 000160 000161 TAGAGAATTA AGACCTCCAC AGATGGGAGT GGAATCCGCA ACTGCTCAAT CCATCCACTG AGAAGTCCCA TAAAAGATGG 000240 000241 ACAATCCATA ACTGAAACCC AACCTTCGGC ACAACGATCA AATTCTACAT GCATAAAGCA AGAGATCTGT GTGCCAGATC 000320 000321 CATCTTAAAG GCACCCCACC CAGAGGACAG AGTCTGTCTC CTTCCCCTAA ACAATATGCA GAAACCACCC TGGTATTTCA 000400 000401 TGGGTTCTCA CTTAGGAAAA TTGAGTTCTG TTCAATGATG CCCCTTCTGC ACTGGTTGGT TTCATGTGAC AAAGAGAGCT 000480 000481 CTAGGGAGGA CTTTTGCTAG GGGAACGCAG ATTGTTCCAG CAAGATGAAG GCCTAGGAGA CCTGGATGGC CTGGGTGTTT 000560 000561 TCTTCCCAGG GAGAGCAGAG GAGGCCTGGA TTTGAACTCG AGTCTTATGA CTTTGCCATT GAGGCAACAT CCAAAATAAA 000640 000641 AATAGCATGC TAACCCCAA |
Predicted Small Protein
Name | ENST00000422494.1_smProtein_545:652 |
Length | 36 |
Molecular weight | 3996.4804 |
Aromaticity | 0.142857142857 |
Instability index | 74.9828571429 |
Isoelectric point | 5.00238037109 |
Runs | 7 |
Runs residual | 0.0188861985472 |
Runs probability | 0.0305852070558 |
Amino acid sequence | MAWVFSSQGEQRRPGFELESYDFAIEATSKIKIAC |
Secondary structure | LEEEELLLLLLLLLLLEEELHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |