ENST00000421685.2

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000421685.2

Source

Gencode19

Same with

,

Classification

intergenic

Length

2078 nt

Genomic location

chrX+:46404928..46407843

Exon number

2

Exons

46404928..46405062,46405901..46407843

Genome context

Sequence
000001 GCAATGCGCA CGCGCAGTGG CTTTGAAGGC GGGGCAACAA AGCCTGTGGC CGATGTGGCG CTCCTCGGCC CGCGCTTCAG 000080
000081 TGGTTATGAC AGTGTTCGCT CTAAGGGGAG AAGGAATGTG TGACCATTTC CAACGGTTAA CTTGCATTCC CCAGATAGTT 000160
000161 TGGATGAGTT ACAACCTAAA TCTGCAAACT CAATACAGCC AGACCCTGGG AAGTGACTCT CTCCAAGCCT CCTGTACAAG 000240
000241 TCCCAGGAAA AGAGCCTGTT TTCCCTTGGA CATGTGAGCA GTGAATTACT GCTCATTCAG AATTTCATGT GTATGTGTTA 000320
000321 CTGATGGCCA GGTTTAGAGA TACCAACCTA TTTATTTCTA GAGGAGAGGT GATTTGATAA CCTTTTCAGA TATCACTATC 000400
000401 AGTAGGCAGA AAAGGGTTAA TAGTATGATA GGGTTAATAT GTCCTGAGGA GAGTAAAGAA ATTGCAAACT GCAGAAGCAC 000480
000481 CTGATCTGTG GCCCTGGCCA GCATCTCTCC ATATCCTGAT TCTGTAAGAT CAAGTGTTTA TGCAGAAAGA GAAGGGACTG 000560
000561 ATGATTTGAA TGTGACCAGA TGCAGGGCAT GCCCTTATTG CCATGCCAGC ATTTGCTATT CATGATGTTA GTATTCAAAA 000640
000641 ATCAAGAAAC ACCCTTCCTG GGCCATTGGT GTCTACTAAT CCATTGGAAG AAAAGACTGG AATCCACCAC TTACTAGCTT 000720
000721 CTTGGGCCTC AGTCCCCTCT TTTCTGCCAT AGCTAAGGAC CACCTAACCT AGATGGCTGT TGTTATTGTT CAAAGGGACA 000800
000801 TCTTTAGAGC CTCAAGCCCA GGAATAGCCC GTGGCAGGCA CCTGGTAAAT GTTAGTTTTC ATTGTCCTAT CCCAACACTA 000880
000881 TGAAACATGC AGCACTCTCT GCAACTGCCC CTGTGGATTT CCATAGGCAG GAGAGTATCC AGTGTTGAGT GGAGCTGGTA 000960
000961 TTCTCAGAAA CGAAGCCCCT TTCCTCATTT TGCGCCAATC TCTTCAGTCA TTTTTACCCT AGTAGTATAA TGCTTTGTCA 001040
001041 AAGTCACTGT CATCTGATGT TAACAGTTGT TTTCGCCAGA TGACTTTTCA AAAGGTAACT TCACCATAAT ACCGGTTAAT 001120
001121 GTGATAAAAA CACTGCATGT AGCCAATTTT TTTTTTTTTT GAGATGGAGT TATTGGCTCT TGTTGCCCAG GCTAGAGTGC 001200
001201 AGCGGCGTGA TCTTGGCTCA CTGCAACCTC CATCTCGTGG GTTCAGGTAA TTCTCCTGCC TCAGCCTCCC GAGTGGCTGG 001280
001281 GATTACAGGC ACACGCCACC ATGCCCAGCT AATTTTTTTG TATTTTTAGT AGAGTCGGGG TTTCACTATA TGTTGGCCAG 001360
001361 GCTGGTCTCG AACTCCTGAC CTCAGGTGAT CCGCCTGCCT CAGCCTTCCA AAGTGCTGGG GTTACAGGTG TGAGCCACTG 001440
001441 CACCCAGCCA AATATTTTCT TATTTATTTA TTTATTTTAG AGACAGGATG CCATTATGTT GCCTAGTTTG GAATGCAGTG 001520
001521 TCTATTTAGA GGCGTGATCA TGGCATACTA TAGCCTCGGC TCAAAGGACC CTGGTCTCAA AGGACCCTGC CACCTTAGCC 001600
001601 TCCTGAGTAG CTGGGACAAG TGTGCGCCAC CACACCTGGC TAATTTTTTA AATTTTTTGT AGAGATAGTG TCTCGCTATG 001680
001681 TTGCCCACGC TGGTCTGGAA TTCCTGGACT CAAGGCCTCT TCCTGCCCTC AGACTTCCAA AGTGTTAGGA TTACAGGGTG 001760
001761 AGTCACCACG CCCAGCCAGT GTGAATTTTC TAATGCTGAG TAAGTTGTGA TCCAGAAGTA AATGTATCTG CAAGCTGATT 001840
001841 TAAATTGTAG ATTTTCTCTT CATTGCATAT TTTCTGATGT TGAATAAAGT CTGAGTATTA ACTAAAGTTT TTGCTTCTTA 001920
001921 AATATGTAAG AATTGTCCTC AAAATCTCTA TTCTTGAGCA CAGTAGTAAA AATATTTTTA CATACATTGT ATTTCAAGGG 002000
002001 TTCTGCATAA GCAACCTTGT TTTATTGTGA CAATTTATTT GGGAATTGTA TCAAATATAT AATACTGAGA TGTTCTCA
[back to top]

Predicted Small Protein

Name ENST00000421685.2_smProtein_602:751
Length 50
Molecular weight 5306.0591
Aromaticity 0.0612244897959
Instability index 44.6346938776
Isoelectric point 6.81292724609
Runs 9
Runs residual 0.0216216216216
Runs probability 0.0294608333825
Amino acid sequence MPAFAIHDVSIQKSRNTLPGPLVSTNPLEEKTGIHHLLASWASVPSFLP
Secondary structure LLLEEEEELLEELLLLLLLLLLLLLLLHHHLLLHHHHHHLLLLLLLLLL
PRMN -
PiMo -