ENST00000420724.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000420724.1

Source

Gencode19

Same with

lnc-SPRED2-2:1

Classification

intergenic

Length

1656 nt

Genomic location

chr2-:65816700..65867311

Exon number

4

Exons

65816700..65816953,65818039..65818171,65828291..65829496,65867249..65867311

Genome context

Sequence
000001 GCCACTGCAC TCCAGCCTGG CGACAGAGCA AGACTGCGTC TCAAAAAAAA AAAAAAAAAA AAGGCTGGAG TGCAACGGCA 000080
000081 CAATCTCGGC TCACCGCAAC CTCCGCCTCC CGGGTTCAAG CGATTCTGCT GCCTCAGCCT CCTGAGTAGC TGGGATTACA 000160
000161 GGCATGTGCC ACCACGCCCG GCTAATTTTG TATTTTTAGT ACAGATAGGG TTTCTCCATA TTGGTCAGGC TGGTCTCGAA 000240
000241 CTCCCAACCT CAGGTGATCC GCATGCCTCA GCCTCCCAAA GTTCTGGGAT TACAGGCATG AGCCACCGCA CCCGGCCATT 000320
000321 TGTATGTAAT TTTCTATATT TATTGAAATG CATTTTAAGT AATATGAAAG CATTTTTCTC CTTACAATGG AAAAACCAAC 000400
000401 TTGATTTTAC ATTTATTTAT ATAACCTGAC TTAATTCTAT GTAAGTCAAG TGAAAAAGGA AACAACTGCT CTGTGGAATC 000480
000481 AACCTGAAGA TGTCTAATTT TTCCTCTGAT GCCACCAGAC TTAAAGCAGT TCACGATCCT CTCTACAAAG AAGTATATTT 000560
000561 AGGTTCTCCC TCTCCCTCTC CCTCTCCCTC TCCCCACGGT CTCCCTCTGA TGCCGAGCCG AAGCTGGACT GTACTGCTGC 000640
000641 CATCTCGGCT CACTGCAGCC TCCCTGCCTG ATTCTCCTGC CTCAGCCTGC CCAGTGCCTG CGATTGCAGG TGCGCGCCGC 000720
000721 CACGCCTGAC TGGTTTTCGT ATTTTTTTGG TGGAGACGGG GTTTCGCTGT GTTGGCCAGG CTGGTCTCCA GCTCCTAACC 000800
000801 GCGAGTGATC CGCCAGCCTT GGCCTCCCGA GGTGCCAGGA TGGCAGACGG AGTCGCGTTC ACTCAGTGCT CAATGGTGCC 000880
000881 CAGGCTGGAG TGCAGTGGCA TGATCTCGGC TCGCTACAAC CTCCACCTCC CAGCTGCCTG CCTTGGCCCC CCAAAGTGCC 000960
000961 GAGATTGCAG CCTCTGCCTG GCCACCACCC CGTCTGGGAA GTGAGGAGCG TCTCTGCCTG GCCGCCCATC GTCTGGGATG 001040
001041 TGAGGAGCCT CTCTGACTGG CTGCCCAGTC TGGAAAGTGA GGAGCGTCTC TGCCCGGCCG CCATCCCATC TAGGAAGTGA 001120
001121 GGAGCGTCTC TGCCAGGCCG CCCATCGTCT GAGATGTGGG GAGCGCCTCT GCCCTGCCGC CCCGTCTGGG ATGTGAGGAG 001200
001201 CGTCTCTGCC CGGCTGACCC GTCTGAGAAG TGAGGAGACC CTCTGCCTGG CAACCGCCCC GTCTGAGAAC CCAAAGACTA 001280
001281 GAATTCCATT TCTAAACCCA GCCCAGCAGC CGGAAGTCAT GAAGCAGTCA ACCTGCCTGG ACATCCAGCT ACGCTCTGCT 001360
001361 GCGCCATTCT ATCCACCCAT CAAGACTCCC CTCCCTTCTA CTGATAACCC TCCTAAAAGC CAACTGGGAT TGAATTACTC 001440
001441 CTCTGCCAAG AACCCTCTGC TGCACCTTAT CCAAGGCCCA CCATAAAATG ATGCCAGCCC ACCTCACCCA AAACCTCTTC 001520
001521 CAGAAAGTCC CAGCTCCACC CTGGTTCTCT CCTCCACAGA TGTCAGACCT GTATGTGGTC TGATGGCTCT CTCAGCCTCC 001600
001601 TTCATTCTCT CCCCATTTCT GCCACATTTT CCCCAATAAA TCTTGTGTGT GTCTAA
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Predicted Small Protein

Name ENST00000420724.1_smProtein_839:1003
Length 55
Molecular weight 5673.6813
Aromaticity 0.037037037037
Instability index 44.6111111111
Isoelectric point 8.29791259766
Runs 7
Runs residual 0.0330623306233
Runs probability 0.0366416837005
Amino acid sequence MADGVAFTQCSMVPRLECSGMISARYNLHLPAACLGPPKCRDCSLCLATTPSGK
Secondary structure LLLLEEEELLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLLLEELLLLLLL
PRMN -
PiMo -