ENST00000420724.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000420724.1 |
Source |
Gencode19 |
Same with |
lnc-SPRED2-2:1 |
Classification |
intergenic |
Length |
1656 nt |
Genomic location |
chr2-:65816700..65867311 |
Exon number |
4 |
Exons |
65816700..65816953,65818039..65818171,65828291..65829496,65867249..65867311 |
Genome context |
|
Sequence |
000001 GCCACTGCAC TCCAGCCTGG CGACAGAGCA AGACTGCGTC TCAAAAAAAA AAAAAAAAAA AAGGCTGGAG TGCAACGGCA 000080
000081 CAATCTCGGC TCACCGCAAC CTCCGCCTCC CGGGTTCAAG CGATTCTGCT GCCTCAGCCT CCTGAGTAGC TGGGATTACA 000160 000161 GGCATGTGCC ACCACGCCCG GCTAATTTTG TATTTTTAGT ACAGATAGGG TTTCTCCATA TTGGTCAGGC TGGTCTCGAA 000240 000241 CTCCCAACCT CAGGTGATCC GCATGCCTCA GCCTCCCAAA GTTCTGGGAT TACAGGCATG AGCCACCGCA CCCGGCCATT 000320 000321 TGTATGTAAT TTTCTATATT TATTGAAATG CATTTTAAGT AATATGAAAG CATTTTTCTC CTTACAATGG AAAAACCAAC 000400 000401 TTGATTTTAC ATTTATTTAT ATAACCTGAC TTAATTCTAT GTAAGTCAAG TGAAAAAGGA AACAACTGCT CTGTGGAATC 000480 000481 AACCTGAAGA TGTCTAATTT TTCCTCTGAT GCCACCAGAC TTAAAGCAGT TCACGATCCT CTCTACAAAG AAGTATATTT 000560 000561 AGGTTCTCCC TCTCCCTCTC CCTCTCCCTC TCCCCACGGT CTCCCTCTGA TGCCGAGCCG AAGCTGGACT GTACTGCTGC 000640 000641 CATCTCGGCT CACTGCAGCC TCCCTGCCTG ATTCTCCTGC CTCAGCCTGC CCAGTGCCTG CGATTGCAGG TGCGCGCCGC 000720 000721 CACGCCTGAC TGGTTTTCGT ATTTTTTTGG TGGAGACGGG GTTTCGCTGT GTTGGCCAGG CTGGTCTCCA GCTCCTAACC 000800 000801 GCGAGTGATC CGCCAGCCTT GGCCTCCCGA GGTGCCAGGA TGGCAGACGG AGTCGCGTTC ACTCAGTGCT CAATGGTGCC 000880 000881 CAGGCTGGAG TGCAGTGGCA TGATCTCGGC TCGCTACAAC CTCCACCTCC CAGCTGCCTG CCTTGGCCCC CCAAAGTGCC 000960 000961 GAGATTGCAG CCTCTGCCTG GCCACCACCC CGTCTGGGAA GTGAGGAGCG TCTCTGCCTG GCCGCCCATC GTCTGGGATG 001040 001041 TGAGGAGCCT CTCTGACTGG CTGCCCAGTC TGGAAAGTGA GGAGCGTCTC TGCCCGGCCG CCATCCCATC TAGGAAGTGA 001120 001121 GGAGCGTCTC TGCCAGGCCG CCCATCGTCT GAGATGTGGG GAGCGCCTCT GCCCTGCCGC CCCGTCTGGG ATGTGAGGAG 001200 001201 CGTCTCTGCC CGGCTGACCC GTCTGAGAAG TGAGGAGACC CTCTGCCTGG CAACCGCCCC GTCTGAGAAC CCAAAGACTA 001280 001281 GAATTCCATT TCTAAACCCA GCCCAGCAGC CGGAAGTCAT GAAGCAGTCA ACCTGCCTGG ACATCCAGCT ACGCTCTGCT 001360 001361 GCGCCATTCT ATCCACCCAT CAAGACTCCC CTCCCTTCTA CTGATAACCC TCCTAAAAGC CAACTGGGAT TGAATTACTC 001440 001441 CTCTGCCAAG AACCCTCTGC TGCACCTTAT CCAAGGCCCA CCATAAAATG ATGCCAGCCC ACCTCACCCA AAACCTCTTC 001520 001521 CAGAAAGTCC CAGCTCCACC CTGGTTCTCT CCTCCACAGA TGTCAGACCT GTATGTGGTC TGATGGCTCT CTCAGCCTCC 001600 001601 TTCATTCTCT CCCCATTTCT GCCACATTTT CCCCAATAAA TCTTGTGTGT GTCTAA |
Predicted Small Protein
Name | ENST00000420724.1_smProtein_839:1003 |
Length | 55 |
Molecular weight | 5673.6813 |
Aromaticity | 0.037037037037 |
Instability index | 44.6111111111 |
Isoelectric point | 8.29791259766 |
Runs | 7 |
Runs residual | 0.0330623306233 |
Runs probability | 0.0366416837005 |
Amino acid sequence | MADGVAFTQCSMVPRLECSGMISARYNLHLPAACLGPPKCRDCSLCLATTPSGK |
Secondary structure | LLLLEEEELLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLLLEELLLLLLL |
PRMN | - |
PiMo | - |