ENST00000419035.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000419035.1

Source

Gencode19

Same with

lnc-CALM2-2:5,NONHSAT070551

Classification

intergenic

Length

1892 nt

Genomic location

chr2-:47441088..47572105

Exon number

3

Exons

47441088..47442398,47447948..47448462,47572040..47572105

Genome context

Sequence
000001 ACAACCCTGG GATTCCCTCG CCCTCAGATT CCAGAATCCA ATTTCTTGGA TTTCAGTGTT TTTAAGGATT CCGTGAGTCA 000080
000081 GGAGCTTGGC CAGGCTCAGC TGGGACACTC ATCTTTGCTT CACCTCATGT CAGCTGCAGC ATCTTAGGAA TGCAAGACAG 000160
000161 CCTCATTCAC ATCCGGCGGC GGGTGCTGGC TGTCCACTGG GTGCCTTCGC TCTTTTTCAA GTGGTTTCTC ATCCTCTGGG 000240
000241 GTTTCACTGT CTCCATGTGG CCTCCCTAGC AAGTTGCTTA GATTTCTTTA CGTGGAAACT GGCTTTCTAG AGGGTAAAAA 000320
000321 TGGAAGCTGC AAGGACTCTT ATGGCCCAGA AGTCCCAGAA CGTCACTTCT TCCACAAGTC ATAGGGCCAG CCAAGATTCA 000400
000401 AGGGGAAGGA AACAGACTCT GTCTCTTCAT ATTTCAATGG GACAAATTGT TGCAGCCACC TTTGGAAACA ATCTACTGCA 000480
000481 ATACACTACA GCAGTGGACA TCTGGGCCCT TACCAGGTGC CAGACGCCGT ACTAACAGCT TTATACGGAT GAACTCATTT 000560
000561 AATCCTCCCA AACTCCATGA GGTTTTGCAG CCCTTGCCAT GAGTGGCCAG TTGCTGATAG CATTGCTGCT GCCTGTTGCT 000640
000641 ATTCTGGGAT AGGAACTGAG GATGTGCTGT GATTACCCAG ACCAGAAGGA AGCTCAGAAG GCACTGGTCC TCTCAGGTGG 000720
000721 CACCCAGATC CAGTGTGAGC CATGGGGGAT GAAGGGTGGT TAAGTGAAAA GCTTTGGAGT GCTGACAGGT GGTCCCCCTG 000800
000801 ATATGCCAGG AAATTACTTC CGGGCAAGAG AAACAAAGGA GAGTCCATCT TCTAATGTTA CTGGCGCCAT ACCAACAAGG 000880
000881 TGTCAGCTAG AAACCTCTCT CTCTCTCTTG CAAATTCTAG CCTGCAAAAC CTGAGGACTG GCCTCAGGCT AGTCAGAAAT 000960
000961 TTGCCTGAAA ACATCATTCC TTGGGGTGGT GGGACTTCTG GGTAAGCCAG TGTGACTTGA ATTCTTGATT TCTTATACTC 001040
001041 CCTTCTAACC AACCACCTGA ATGCTGATCT CTACTAGCTG TCTGTGTGCC TTGCATTTCA ATCAGCAGCC TTACAAATGA 001120
001121 TGATGAGGAG AAGGAGGAGG ATGAGGACGA TAGCCAACAT TTACTGTTCT TTTGCTACTG TCCTAAGTAC TTTACAAATA 001200
001201 CCAGATAATT TTTTCTTCAT AACACTGTCA TTACTCCCAT TTTACAGATG AAGAAAACAA AGCTTAAATA GATCACATGA 001280
001281 TTTGGTCAAG GTCACTCATG TCACAGAGCC TGAATCCAAA TCCAGTGAAG CCTCCAGAGC CTAGTTTCTA CCCATGACCC 001360
001361 TGTGTTGCCT ATTGATGGTA CAGTGTAGGT TTTTTCCTTC TTCCTTTTTC TTTTTTTGAA AGTCTTTATT GAATTATAAT 001440
001441 TGGCATACCA TTAACTGCAA ATATTTGAAA AATACAATTT TATGAGCTCT GACATACATA CACCCATAAA ACCATTGTTA 001520
001521 CAATCAAGAT AATGAATATG TCCGTCATTC CCCAAAAGCT TCCCTGTGCC CCTTGGTAAT CCACCCCTCA CTCCCCACCC 001600
001601 CATTCTGTTC CTAGGCAACC AATCATCTGT TTTCTGTCAG ATTAATTTGC ATTTTCTAGA GTTTTATATA TGGAAGCAGA 001680
001681 CAGCATGTAC TCTTTTTTTG TCTGGCTTCT TTCACTCAGC ATAATTATTT TTAGGTTCAT CTATATTGGT GCACGTATCA 001760
001761 ACAATTCATT CTTTTCTATT CCTGAGTACT ATTCCATTAT ATAGGTGTAC TAAATTTGTT TATTCAACTC TTGATGGACA 001840
001841 TTGAGTTGTT TACAGTTTTT GGCTATTACA AATAAAGCTG CTATGAACCT TC
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Predicted Small Protein

Name ENST00000419035.1_smProtein_149:268
Length 40
Molecular weight 4811.7621
Aromaticity 0.205128205128
Instability index 77.8897435897
Isoelectric point 11.7113647461
Runs 7
Runs residual 0.0107466063348
Runs probability 0.0202765791001
Amino acid sequence MQDSLIHIRRRVLAVHWVPSLFFKWFLILWGFTVSMWPP
Secondary structure LLLHHHHHHHHHHHHHLLHHHHHHHHHHHHLLLEELLLL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLL
PiMo iiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooo