ENST00000417643.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000417643.1 |
Source |
Gencode19 |
Same with |
lnc-FAM54A-1:1,NONHSAT115111 |
Classification |
antisense |
Length |
734 nt |
Genomic location |
chr6-:136415853..136546733 |
Exon number |
8 |
Exons |
136415853..136415917,136416854..136416963,136417132..136417157,136417258..136417426,136432134..136432239,136438208..136438310,136483390..136483486,136546676..136546733 |
Genome context |
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Sequence |
000001 CTTTGCTCCT CCTTTGGCTT CCACCATGAT TGTGAGGCCT CCCCAGCCAT GTGGAACTCA CTTCTCCTTC CTGTCACCAT 000080
000081 GTGAAGAAGG ACGTGTTTGC TTCCCCTTCT GCTATGATTG TAAGCTTCCT GAGGCCTCCC CAGCCCTGCA GAACTAAATC 000160 000161 CAAAGAAGCC ACTATGCTGA AAATACTTTG AGTGGGTTAG AGTTTCGCTC AAGGAAGTGC TGTAGTAGAA AATGGCCATT 000240 000241 TCTCTGTGCT GTGTTCAGAG TAAGAGACAT GGGTGAAAGA GTTATCCGGA ATGGAATGCT GAGGAGACCC TAAAGGGAAT 000320 000321 TTCCGGGTGG ATGGCCAGCA CTGTCACTCG ATGAGTGGAG GATTGACAAA CTTGCCAAAT ACTGCAAGAA AAGATGTTGC 000400 000401 TGATCACGGA TAGGAAATAC TCCAAGTCCC AGGAGATAGT CTGTTCTTAG GAGACTTCCA CACCAAGTCT GCTGACCAGA 000480 000481 GAAGGACCAG TCAACCACCA CACTCTCCGC TGGAGCCCAC TCAGCACCAG GAAGAAACAG ATGGAAAAAC CTAGACTTGC 000560 000561 TCCCTTAGAT CAGTGCTATT ATCAATATCA TCCTCTGAGA GACAAAGCTG TTAAATTACT TTGCCCAGAT GACATGGCCA 000640 000641 GTGAGTATGG AGACAGACCG GAAATTAAGG CTCTGTTCTA GATTCTCGGA ATATAGCAGT GAACAAAACA GATAAAACGT 000720 000721 GCCTGCCCCT GTGG |
Predicted Small Protein
Name | ENST00000417643.1_smProtein_113:190 |
Length | 26 |
Molecular weight | 2888.5604 |
Aromaticity | 0.04 |
Instability index | 42.62 |
Isoelectric point | 10.3062133789 |
Runs | 5 |
Runs residual | 0.00830188679245 |
Runs probability | 0.0409291644586 |
Amino acid sequence | MIVSFLRPPQPCRTKSKEATMLKIL |
Secondary structure | LEEEELLLLLLLLLLLHHHHHHHHL |
PRMN | - |
PiMo | - |