ENST00000415469.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000415469.1

Source

Gencode19

Same with

lnc-RGR-1:1,NONHSAT015325

Classification

intergenic

Length

2685 nt

Genomic location

chr10+:86039736..86054415

Exon number

6

Exons

86039736..86039821,86047980..86048176,86048350..86048536,86048731..86048800,86051163..86051893,86053002..86054415

Genome context

Sequence
000001 AAGATGGCCG AATAGGAACA GCTCCGGTCT ACAGCTCCCA GCGTGAGCGA CGCAGAAGAC GGGTGATTTC TGCATTTCCA 000080
000081 TCTGAGTTAG GCTTGGCCAC AAGAGACAAA TTGCAAGGCA TGGAGACATT TTTCTAACAC TTGAAAATTC TATGCAAGAG 000160
000161 CACCAGGCAG CTCAGTCACC TTGTCACTTA TCTACTGGGT CACCTTGTTG GCATGGGATG CCAGCCAGGC TTGCAGCTGC 000240
000241 TCCATCCTCC CCTGAATTTG TACTTCAGCT TCTCCACTCA TGGCCTGCCC TGAGGACTTC ATGGTTCAGC ATCAGATATG 000320
000321 AAGACGACAG CCCTATAGAG ACTATTTAAC CAGCTTCTAA GGTGGTTAAA TATCTTACCA GCCTATGTAA GGCCGAATCC 000400
000401 TACTAACAAA GCACTGGTAT ATGTAATATC CCAGTGGTTT GCTTCTCTAA TTGAACCCTG ACTACTACAG AAGTCCAGAT 000480
000481 ACCACAGTCT GAGTAGTTCT TTAATCTGCT TATCTGGTGA TTCCATCACA AATGGTTCAG TTGGGCAAAA GGCTCCAGTG 000560
000561 AAGAGCTGTG AGGCTTATGT ATGGGGACTC ACCAGGGGCC AGCCCAGGCT GCCCACAAGA CCATGAGCCA CCCTGTGACT 000640
000641 GAATGAAGTG GAGAGAAGGG AAAGTAGTTA AGAAATCAAG AAAAGTGTCT TTCAGCACCA TGGCCAGAAG TTGTGCCACA 000720
000721 GAATTGGAAC AGGGAAACCC AGAGAGCCAG TGCTGTCCTA GTCCTAGTGC TGAATGATCC CATTGGTGTC CTTAGAAGGG 000800
000801 CTCTGACTTC AGCCCACCAG CAGCATGTGG ACTTATAAGC TTTCTAGCAG AGTTGGAGAT CCCCAGGAAA AAGAAATCTC 000880
000881 TTAAAATGAA ATGAAACTTC AATCAACCAA GGCTTTCTAG CCTGATGTGA GTTGTCTTTA CACACATATA CCTTTTTAAC 000960
000961 AAAGAAGAAG AAAAGAATGG ACATTGATAG AACTTGCATT CTGTGTTCAT CACCAGGATA GTTGCTTTAT AAATATCATT 001040
001041 TTGTTTTTAG TCACAACCCA ATGCAGCATT TTCCTTACTG ACAAAGAACC TGAGGCATGG AGAATTTAAG CAACTCCCTG 001120
001121 AAGGCCACCC AGCTAATCAG CAGTGGGAAA AGAATTTAAT TCTAGATCTT TCATTCTAAA GCCCAGCTCC TTACACACGT 001200
001201 TGGATGCTAC TATTTCCAAA ATGTCAACAA CACTTTGGAC TATCAACCTG TCTAAAGAGT ATTTGAAGCA GTGATGCAGG 001280
001281 CCTCTGAAGG AAAAGGTGCA CATTTTCAAC AATAAAAGAG AGACATTCCT TTAGTGTATC TCCACATTCC CTGAAGGGGA 001360
001361 GCTGGAATGA CATGACGGAC TTGGCCTCAG GGCCCCAAGC CTTCCCTGTT GCAGTCTTCA TGACACTCCT CAGAAGCAGC 001440
001441 AACTCCAGCC ATGTCTGGAA CCATTCCTTA CCAGACAGGA GGATATCATG GCCTCAACTC ATGATCTGTA CCAAGCCAAA 001520
001521 CCTCTTTTGG GGTACCCACC AAGCCTCAGG CCTCACCTTC TCTGCCCTGT TGTCCCTGCC CATCTGTCCT GGTTTTCTAC 001600
001601 TAGTTTCCAC TACTGGACAC TTGTCTGAGG CTGGGTCCCC ACCTGGATCT TGTGGCCTCT TGCCCAGGGC TTGGAGGGAA 001680
001681 GCTGCTCCCA CACTTGAAGA TGACAGCTGA GCATGGTCCT TTGTGGGCGT GCTGTCAGGA AGATGACAGT GCAATCTGTT 001760
001761 TAATGTGCCA GTTGTCTCTG TGAGTCCCTC ATCCGGATGA GCACTTGTCA CACCCCTGCA GAGCCCCAGC TGGTTCTTAG 001840
001841 AGAGGTGCTC CAGCTCTGTG ATTACCTAAT CTGGCTTCCC AATCTATCCC ACAATGTGTC ATTGCTGAGG TCCCTGTGGG 001920
001921 TCTTGCAGAT AAACTTGCTA CAGTCATCCT ACACAAAAAA GAAGCTCGTT ATCATGAAAC CGGCCTGCTT TTTAGCTCCT 002000
002001 GGGCCCTAAC TCACCCCAGA TTGCTGCCAG CTCTTTTGTT TTCCCACTTA GACCAAAGGG ATTGAGAAGC TTTCCCATTC 002080
002081 CTTGGAGCTG CCACCCTCCA TTCTAAGGCA GTCTCCCCCT TCACCCTGCT TGCTGCACCC CAGATGCTGC AAGGCCCATG 002160
002161 TGCTGTTTTT GACTTCAGTA CTTCAGATTG CTGTGGGAAC ACAGGAGGCA GCAGCCAGAT GAGAAATTGA GTCTGACTCT 002240
002241 GGAGTATTAT AAAGTCCTTA TAGTTACTGG CATTAGGTAT AGGGTCTGTA TTATTAAAGA GAAATTATTC ACCAAACACT 002320
002321 TGTTAAAAAT GGCAAGACAG TTTATTTAAG AGCATTGCAA TAGGTAAGTG CTATGGTCTC AATGTTTGTG TCTCCCTCAA 002400
002401 ATTCATAAGT TGAAACTTCA CTTCCAAGAT GAAGGAATTA GGAGGTGGGC ACTTTAAGGG ATGATTATGT CATAGGCCAG 002480
002481 AGCCCTCATG AACGAGATCA GTGCCCTTCT AAAAGAGGCA TTGGGAGAGA CCCCTCACCT TTTCCATCAT ATGAGGACAC 002560
002561 AGCCAGGAAG CATCATCCAC GAACCAGAAA ATTGGCCCTT ACCAGACACT GAATCTGCTG ATGTCCTGAC CATGGACTTC 002640
002641 TGAGCCTTCT GAACTGTGAG AGATAAATTT CTGTTGTTTA TAAGC
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Predicted Small Protein

Name ENST00000415469.1_smProtein_1796:2008
Length 71
Molecular weight 7974.4987
Aromaticity 0.0714285714286
Instability index 83.8442857143
Isoelectric point 8.98773193359
Runs 7
Runs residual 0.0448373408769
Runs probability 0.0704822469528
Amino acid sequence MSTCHTPAEPQLVLREVLQLCDYLIWLPNLSHNVSLLRSLWVLQINLLQSSYTKKKLVIM
KPACFLAPGP
Secondary structure LLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHLLLLLLLEEEE
LLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL
LLLLLLLLLL
PiMo ooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii
iiiiiiiiii