ENST00000412495.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000412495.1

Source

Gencode19

Same with

lnc-GATA5-2:1

Classification

intergenic

Length

2302 nt

Genomic location

chr20-:61141550..61148733

Exon number

7

Exons

61141550..61141970,61142427..61142574,61142913..61144065,61144755..61144909,61145034..61145207,61145519..61145668,61148633..61148733

Genome context

Sequence
000001 GCAGAAGTGC CGAGTCCCGG CCGGGGGCAG CCTCGCCGCC GCTCAGCTCG GGAATCCCTG CCCCCCACCA GCACCTCAGT 000080
000081 GGGGGATACT GCAAGTTCAA GCACCAGCCT CACAGTAACA GCCGGCACAC AGCACTTAGG CTGCCTGGTG TTCCAGAAGC 000160
000161 TTCTGCAGGG GCTCTATGCT GCACTCAAGG CATCCCTAAG AGGAGAGCAT TTTGCTGTCC CCACTTTACG GAGAAGGAAC 000240
000241 GTGGGCTCAG GGTGGTTTAA GGCGTGAATG AATGAAGGAG CAAGCAGTAA GCCCCGACAG CAAGGCCACC ACAGCCCTCG 000320
000321 CCCCACAGGG ACGCCTGAGC AAGGACCCAA GCAGGGGACA AGCAGGCTCA CCCCGCCCTT GCGGGGCTGA CCACGAGGCC 000400
000401 CCGTCCGGTG GAACACGCCA TGACGCTTCA GGAGGCTCAT GTAGCTGGCG CCGTATGGGA CAGCGGGGGA GAGAGAAAAT 000480
000481 GCACAGCCCA GGGAATGTGG AGACAGGCCC AGCGCCAGGC ATGGGGGCCG GAAGGAGCAG CCGGGGAGCA GGGGGCAGGG 000560
000561 CCTGGAGTCC CGCCTTGCAG ATCTGAACCT GCCCCAGCCC CAGGACTCTG AGTGCAGCAA GAGGGGAGCC GGGCTGGAGA 000640
000641 GTGGGGAGCA CGGAGACTGT GGCCTGGATG GTGCCAGAGC AAACAGGAGA GAGGCTGCCC AACGCAGAGG CTGCAGCACA 000720
000721 GACCAGAGGG TCCCGGGGCT GACTGGGTGG GGGCAGCTCC CAGCGAGAGG CCCCTGGGAT TTGGGTAAGT AGAGGCACAT 000800
000801 GCAGACTCTG GCCACAGGGC ACCTCGCGCA CGAGGGGAGT TCACCACACA AGCTGAGCGG AGGGCGGACG CAGGAGAGCA 000880
000881 GCGGTTTCTC GGAAGCCAAG GGCGGTCATG GAGCCCCACG CCACAGCGCT TCCCACGGGG CCACACCATC CGGTCTGCGG 000960
000961 AGGGGGCTGC ATTGCCGGGA AGGACCATCT GATTCTGGAT TCCAGCCTCA CCCTGGGCCA CCGCTGAGTG TCCCAAGTGG 001040
001041 CCCCTTAGCC CCCAGGGCCA GGCGGCATCC CAATCCCCTA GGGATGTCTG TGCTCAGAAT GTGGCACACA CGCCCCGGCA 001120
001121 GGGCCATCCT CCTCCTCCTG CACCCGCCAC AGCCGTGGAT TCGGGGTCTC TATCGTGGGC AGAAATTCAC ACAGTCAAGG 001200
001201 TGAGGGTCCC AGGAGCAGCT GTGACCAGGC CCCGGCTGCC AGGGAGAGGG GGTCTTCAGC CGACGGGGCA GACACCCTGA 001280
001281 GATGGACCCT TGTCCAGGGG AGGGCCCTGC CACCCACAAT TCCTTGGCAT TCCTGCACCA GCAGGACGGG CTGAGGGAGG 001360
001361 CGCCTCACCA GTGCCAGCGC CCAGCATCAC TGTGCCCCGG TGGAGGGGGA GGCCCTTCCG AGCCTGGGCC TGGGTGTGGA 001440
001441 TGAGGGCAGG TCTCTCACCT CTCTGACCTC AGCTTCCTCA ACTGGGAAGG GGGGCCACAG CACCCCCTTA GGGGTGATGA 001520
001521 GGAAGTGGGA GCTCAGGGAG GACCCCGGGC AGGGCTGCCT CCTCACCTCT CTTCGGCCTT TGGACACTGG AGCTCAGAGG 001600
001601 ACCAAGTGAA TGAATGAATG ACTCGATCAA TCAACTGATC CATGAATCCA TGGACCCCTG AACAGCTGGA CAGCTGGGCT 001680
001681 GTGGGCAGGA CAGGGGACTC TGGCTGAAGC CGCGTTCATA TGTGTTCAGC TTTAGGCCTC CACTGTGCCC GGACCAGCGG 001760
001761 CCCACTCAGT GAGTCGAGTG TGCACCTGGC ACCCCTCTTT CTGGAAATCC ACGAACAATG GGCTCCCAGC AGAGGACTGA 001840
001841 GGCTGAGCAG GCCACTTCCC TGGAGCTGAC CCCACAGCTG TCCTGCTCCT CCTTCGCCTT CTGCCATGAC TGTAAGCTTT 001920
001921 CTGAGGGCTG ACCAGAAGCC CAGCAGATGC CAGCACCATG CTTCCTATAC AGCCTGCAGA ACCGTGAGCC AGCTAAACCT 002000
002001 CTCCTCATAA ATCACCGAGC CCCAGGTTTA TCTTTACAGC AATGCAAGAC CTGACTAATA CAGCACCAGC TCCCCAAAAT 002080
002081 AAAAAGAAAT ATTCAAACAA ATAAGCGCAC AGAAGTGTTC CCAGCAGCAC TATTCACAGC AGCCAAAAGG CGGAGGAGCC 002160
002161 ACAGGCTTGT CAGCTGATGA CAGATAAAGA AAGCATGGCC TGTCATCCCA GCACTTTGGG AGGCCGAGGT GGGTGGATCA 002240
002241 CCTGAGGTTG GGAGTTCAAG ACCAGCCTGG CCAACATGGT GAAACCCAGT CTCTACTAAA AA
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Predicted Small Protein

Name ENST00000412495.1_smProtein_419:610
Length 64
Molecular weight 6454.108
Aromaticity 0.047619047619
Instability index 60.5412698413
Isoelectric point 5.62481689453
Runs 9
Runs residual 0.00210560414642
Runs probability 0.0245932206717
Amino acid sequence MTLQEAHVAGAVWDSGGERKCTAQGMWRQAQRQAWGPEGAAGEQGAGPGVPPCRSEPAPA
PGL
Secondary structure LLHHHHHHLLEEELLLLLEEELHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL
LLL
PRMN -
PiMo -