ENST00000412495.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000412495.1 |
Source |
Gencode19 |
Same with |
lnc-GATA5-2:1 |
Classification |
intergenic |
Length |
2302 nt |
Genomic location |
chr20-:61141550..61148733 |
Exon number |
7 |
Exons |
61141550..61141970,61142427..61142574,61142913..61144065,61144755..61144909,61145034..61145207,61145519..61145668,61148633..61148733 |
Genome context |
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Sequence |
000001 GCAGAAGTGC CGAGTCCCGG CCGGGGGCAG CCTCGCCGCC GCTCAGCTCG GGAATCCCTG CCCCCCACCA GCACCTCAGT 000080
000081 GGGGGATACT GCAAGTTCAA GCACCAGCCT CACAGTAACA GCCGGCACAC AGCACTTAGG CTGCCTGGTG TTCCAGAAGC 000160 000161 TTCTGCAGGG GCTCTATGCT GCACTCAAGG CATCCCTAAG AGGAGAGCAT TTTGCTGTCC CCACTTTACG GAGAAGGAAC 000240 000241 GTGGGCTCAG GGTGGTTTAA GGCGTGAATG AATGAAGGAG CAAGCAGTAA GCCCCGACAG CAAGGCCACC ACAGCCCTCG 000320 000321 CCCCACAGGG ACGCCTGAGC AAGGACCCAA GCAGGGGACA AGCAGGCTCA CCCCGCCCTT GCGGGGCTGA CCACGAGGCC 000400 000401 CCGTCCGGTG GAACACGCCA TGACGCTTCA GGAGGCTCAT GTAGCTGGCG CCGTATGGGA CAGCGGGGGA GAGAGAAAAT 000480 000481 GCACAGCCCA GGGAATGTGG AGACAGGCCC AGCGCCAGGC ATGGGGGCCG GAAGGAGCAG CCGGGGAGCA GGGGGCAGGG 000560 000561 CCTGGAGTCC CGCCTTGCAG ATCTGAACCT GCCCCAGCCC CAGGACTCTG AGTGCAGCAA GAGGGGAGCC GGGCTGGAGA 000640 000641 GTGGGGAGCA CGGAGACTGT GGCCTGGATG GTGCCAGAGC AAACAGGAGA GAGGCTGCCC AACGCAGAGG CTGCAGCACA 000720 000721 GACCAGAGGG TCCCGGGGCT GACTGGGTGG GGGCAGCTCC CAGCGAGAGG CCCCTGGGAT TTGGGTAAGT AGAGGCACAT 000800 000801 GCAGACTCTG GCCACAGGGC ACCTCGCGCA CGAGGGGAGT TCACCACACA AGCTGAGCGG AGGGCGGACG CAGGAGAGCA 000880 000881 GCGGTTTCTC GGAAGCCAAG GGCGGTCATG GAGCCCCACG CCACAGCGCT TCCCACGGGG CCACACCATC CGGTCTGCGG 000960 000961 AGGGGGCTGC ATTGCCGGGA AGGACCATCT GATTCTGGAT TCCAGCCTCA CCCTGGGCCA CCGCTGAGTG TCCCAAGTGG 001040 001041 CCCCTTAGCC CCCAGGGCCA GGCGGCATCC CAATCCCCTA GGGATGTCTG TGCTCAGAAT GTGGCACACA CGCCCCGGCA 001120 001121 GGGCCATCCT CCTCCTCCTG CACCCGCCAC AGCCGTGGAT TCGGGGTCTC TATCGTGGGC AGAAATTCAC ACAGTCAAGG 001200 001201 TGAGGGTCCC AGGAGCAGCT GTGACCAGGC CCCGGCTGCC AGGGAGAGGG GGTCTTCAGC CGACGGGGCA GACACCCTGA 001280 001281 GATGGACCCT TGTCCAGGGG AGGGCCCTGC CACCCACAAT TCCTTGGCAT TCCTGCACCA GCAGGACGGG CTGAGGGAGG 001360 001361 CGCCTCACCA GTGCCAGCGC CCAGCATCAC TGTGCCCCGG TGGAGGGGGA GGCCCTTCCG AGCCTGGGCC TGGGTGTGGA 001440 001441 TGAGGGCAGG TCTCTCACCT CTCTGACCTC AGCTTCCTCA ACTGGGAAGG GGGGCCACAG CACCCCCTTA GGGGTGATGA 001520 001521 GGAAGTGGGA GCTCAGGGAG GACCCCGGGC AGGGCTGCCT CCTCACCTCT CTTCGGCCTT TGGACACTGG AGCTCAGAGG 001600 001601 ACCAAGTGAA TGAATGAATG ACTCGATCAA TCAACTGATC CATGAATCCA TGGACCCCTG AACAGCTGGA CAGCTGGGCT 001680 001681 GTGGGCAGGA CAGGGGACTC TGGCTGAAGC CGCGTTCATA TGTGTTCAGC TTTAGGCCTC CACTGTGCCC GGACCAGCGG 001760 001761 CCCACTCAGT GAGTCGAGTG TGCACCTGGC ACCCCTCTTT CTGGAAATCC ACGAACAATG GGCTCCCAGC AGAGGACTGA 001840 001841 GGCTGAGCAG GCCACTTCCC TGGAGCTGAC CCCACAGCTG TCCTGCTCCT CCTTCGCCTT CTGCCATGAC TGTAAGCTTT 001920 001921 CTGAGGGCTG ACCAGAAGCC CAGCAGATGC CAGCACCATG CTTCCTATAC AGCCTGCAGA ACCGTGAGCC AGCTAAACCT 002000 002001 CTCCTCATAA ATCACCGAGC CCCAGGTTTA TCTTTACAGC AATGCAAGAC CTGACTAATA CAGCACCAGC TCCCCAAAAT 002080 002081 AAAAAGAAAT ATTCAAACAA ATAAGCGCAC AGAAGTGTTC CCAGCAGCAC TATTCACAGC AGCCAAAAGG CGGAGGAGCC 002160 002161 ACAGGCTTGT CAGCTGATGA CAGATAAAGA AAGCATGGCC TGTCATCCCA GCACTTTGGG AGGCCGAGGT GGGTGGATCA 002240 002241 CCTGAGGTTG GGAGTTCAAG ACCAGCCTGG CCAACATGGT GAAACCCAGT CTCTACTAAA AA |
Predicted Small Protein
Name | ENST00000412495.1_smProtein_419:610 |
Length | 64 |
Molecular weight | 6454.108 |
Aromaticity | 0.047619047619 |
Instability index | 60.5412698413 |
Isoelectric point | 5.62481689453 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0245932206717 |
Amino acid sequence | MTLQEAHVAGAVWDSGGERKCTAQGMWRQAQRQAWGPEGAAGEQGAGPGVPPCRSEPAPA PGL |
Secondary structure | LLHHHHHHLLEEELLLLLEEELHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL LLL |
PRMN | - |
PiMo | - |