ENST00000412436.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000412436.1

Source

Gencode19

Same with

lnc-CLIC2-1:1,NONHSAT147768

Classification

intergenic

Length

1329 nt

Genomic location

chrX-:154576450..154581271

Exon number

2

Exons

154576450..154577680,154581174..154581271

Genome context

Sequence
000001 TGTACTAAAG GGAGCACATT GTTGAGAAGG ACCGGTTGCA AATTTCCAAA AAGGAGAGTA AAATAATTAA TGAGTCAAGG 000080
000081 TCTCAGGAGA GACAGAAGGA TGACTTACAA CTTAAGTGTC TCCCTTTGTG GGAGGAATCC CAGCTATAGC CTAGTGGACC 000160
000161 ATTCACCCAG GGATCTTCAA TCATTCGTTC AACCCTAACA TTTATATGCG CACCAGCTAC ATGCTAGGCA GTGCGTCAGG 000240
000241 CATTAAAGAT ACAAGGACGA ATACAGCAGA CACGACCTCA GTCTTTGGAC AGAGTTTACC TTCTATTGAG GAAGATAGAT 000320
000321 GATAAACAAG TAATAAATAC ATAAACAAAG TAATTTCAGC TAGCTATAAA TGCTATGAAA AAATAATAGT GTTATATAAT 000400
000401 AAAGAGCGAC TGGGAAATCT ATTTCACATG GAGTGTTAAG TGAAGGACTT TTTGAAGAAG CGACATTTGA GCTGTTACCT 000480
000481 GTATGATACG AGACCAACAA TGTAACAAGC TGAGGGGAGA GCATTCCAGG CAAAGGGAAA AGCAAAAACA CAGCCTTGGA 000560
000561 GTGGAATGGA GTTTTATTCT GTTTGCCGAC CAGTAAGAAG GTCACGTGGC TGGAGCTGAG TAAGCAAGGG GAATAATGGT 000640
000641 GGGAGAAATT ACGTGGAGGA GGTAGTCAGG GGCTAGATCA TGTATATATT GCCATGCAGG CCATGGTAAG GACTTTGGAT 000720
000721 TTTATTCTGA GTACCATGGG AAGCCACTGA AAAACCTTGC CTAAGATAAT GGGTTTCTGT TTTGCCTAAG GCAAATTAAC 000800
000801 TTTTTACTGA AGTATACTAT ACATTACGGA AAAAGTACAC AAATCGTAAG CTTGATGAAT TTTCATGATG TAATCGCATC 000880
000881 CATATCACTA GCACCCAGGT CAATAAACAG ATCATTACCA GAACCCCAGA ACCCTCCCTT ATGCCCCTTT CCAGTAACGC 000960
000961 CCATCCCCCA ACCCACGGGT AACTACCATC CTGACTTCTA TCACCAAAGA TTAGTTTTGC CTGTTTATAT AAAACTTTAT 001040
001041 ATAATTGCAA TCACAATATG TATTCATTTT GTGTCTGGCT TCTTTCATTT AATATTATGT TTAGGAGTTT CATCATTGCT 001120
001121 TAGCAATAGT TTATTGGTGC TATATGGAAG TTGAGTGCGT GATCACACCA CAGTTTATCC ATTCTACTGT TGATGGACAT 001200
001201 ATGAGTAATT TCCGGTTTGG AACTACTACA AACAGTGCTG TTATGAACAT TCTATTACAT GTCTTTTGGT GAACAAATAT 001280
001281 ATTCACTCCT GTTTGAAATA AACTTAAGAA TGGAACTTAT GGATCATAA
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Predicted Small Protein

Name ENST00000412436.1_smProtein_854:1153
Length 100
Molecular weight 11057.9271
Aromaticity 0.111111111111
Instability index 47.0607070707
Isoelectric point 7.79595947266
Runs 16
Runs residual 0.027926322044
Runs probability 0.0230966260378
Amino acid sequence MNFHDVIASISLAPRSINRSLPEPQNPPLCPFPVTPIPQPTGNYHPDFYHQRLVLPVYIK
LYIIAITICIHFVSGFFHLILCLGVSSLLSNSLLVLYGS
Secondary structure LLLLLEEEEEELLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELEEEE
EEEEEEEEEEEELLLHHHHEEELLLHHHHLLLEEEEELL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH
HHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL
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