ENST00000412436.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000412436.1 |
Source |
Gencode19 |
Same with |
lnc-CLIC2-1:1,NONHSAT147768 |
Classification |
intergenic |
Length |
1329 nt |
Genomic location |
chrX-:154576450..154581271 |
Exon number |
2 |
Exons |
154576450..154577680,154581174..154581271 |
Genome context |
|
Sequence |
000001 TGTACTAAAG GGAGCACATT GTTGAGAAGG ACCGGTTGCA AATTTCCAAA AAGGAGAGTA AAATAATTAA TGAGTCAAGG 000080
000081 TCTCAGGAGA GACAGAAGGA TGACTTACAA CTTAAGTGTC TCCCTTTGTG GGAGGAATCC CAGCTATAGC CTAGTGGACC 000160 000161 ATTCACCCAG GGATCTTCAA TCATTCGTTC AACCCTAACA TTTATATGCG CACCAGCTAC ATGCTAGGCA GTGCGTCAGG 000240 000241 CATTAAAGAT ACAAGGACGA ATACAGCAGA CACGACCTCA GTCTTTGGAC AGAGTTTACC TTCTATTGAG GAAGATAGAT 000320 000321 GATAAACAAG TAATAAATAC ATAAACAAAG TAATTTCAGC TAGCTATAAA TGCTATGAAA AAATAATAGT GTTATATAAT 000400 000401 AAAGAGCGAC TGGGAAATCT ATTTCACATG GAGTGTTAAG TGAAGGACTT TTTGAAGAAG CGACATTTGA GCTGTTACCT 000480 000481 GTATGATACG AGACCAACAA TGTAACAAGC TGAGGGGAGA GCATTCCAGG CAAAGGGAAA AGCAAAAACA CAGCCTTGGA 000560 000561 GTGGAATGGA GTTTTATTCT GTTTGCCGAC CAGTAAGAAG GTCACGTGGC TGGAGCTGAG TAAGCAAGGG GAATAATGGT 000640 000641 GGGAGAAATT ACGTGGAGGA GGTAGTCAGG GGCTAGATCA TGTATATATT GCCATGCAGG CCATGGTAAG GACTTTGGAT 000720 000721 TTTATTCTGA GTACCATGGG AAGCCACTGA AAAACCTTGC CTAAGATAAT GGGTTTCTGT TTTGCCTAAG GCAAATTAAC 000800 000801 TTTTTACTGA AGTATACTAT ACATTACGGA AAAAGTACAC AAATCGTAAG CTTGATGAAT TTTCATGATG TAATCGCATC 000880 000881 CATATCACTA GCACCCAGGT CAATAAACAG ATCATTACCA GAACCCCAGA ACCCTCCCTT ATGCCCCTTT CCAGTAACGC 000960 000961 CCATCCCCCA ACCCACGGGT AACTACCATC CTGACTTCTA TCACCAAAGA TTAGTTTTGC CTGTTTATAT AAAACTTTAT 001040 001041 ATAATTGCAA TCACAATATG TATTCATTTT GTGTCTGGCT TCTTTCATTT AATATTATGT TTAGGAGTTT CATCATTGCT 001120 001121 TAGCAATAGT TTATTGGTGC TATATGGAAG TTGAGTGCGT GATCACACCA CAGTTTATCC ATTCTACTGT TGATGGACAT 001200 001201 ATGAGTAATT TCCGGTTTGG AACTACTACA AACAGTGCTG TTATGAACAT TCTATTACAT GTCTTTTGGT GAACAAATAT 001280 001281 ATTCACTCCT GTTTGAAATA AACTTAAGAA TGGAACTTAT GGATCATAA |
Predicted Small Protein
Name | ENST00000412436.1_smProtein_854:1153 |
Length | 100 |
Molecular weight | 11057.9271 |
Aromaticity | 0.111111111111 |
Instability index | 47.0607070707 |
Isoelectric point | 7.79595947266 |
Runs | 16 |
Runs residual | 0.027926322044 |
Runs probability | 0.0230966260378 |
Amino acid sequence | MNFHDVIASISLAPRSINRSLPEPQNPPLCPFPVTPIPQPTGNYHPDFYHQRLVLPVYIK LYIIAITICIHFVSGFFHLILCLGVSSLLSNSLLVLYGS |
Secondary structure | LLLLLEEEEEELLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELEEEE EEEEEEEEEEEELLLHHHHEEELLLHHHHLLLEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH HHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiT TTTTTTTTTTTTTTTTTTTTTTTTooooooooooooooo |