ENST00000412204.2

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000412204.2

Source

Gencode19

Same with

NONHSAT005668

Classification

intergenic

Length

5783 nt

Genomic location

chr1-:143118705..143211070

Exon number

9

Exons

143118705..143119179,143121073..143121165,143133144..143135855,143189434..143189487,143194181..143194342,143195680..143195893,143196522..143196803,143207727..143207876,143209430..143211070

Genome context

Sequence
000001 TTGATACTTT TACACCACAG AAGTAACTGT GATCTGTCAG AGAACTAGAA GTAGAGTCAG AAGTCCTGGG GAAAATCCTG 000080
000081 TAGCTTGCTT ATATTTTTAA CATTTCTTTT TCAAAATTGT GGTAACTAGA TGAGTTCATC AATGAATGTA TACAGGAGTG 000160
000161 ACTAGTATAA TGTCTAGATT TATGATTTAG TAAATGTAAT TCTTACAACT GACTATAAAA GTGTTAAAAG AGTCAAATTG 000240
000241 AAATAGAATG TTATCAGTGA AACAGAACTG TAGTAACTCT GGGAAATTTT ATCTGTCCAA ATACGTGTGA AGTAAGGTTC 000320
000321 TTACTATAGG GTAGTGTATG GGTTAGATAT CAAAGTGTAA ATGCAATTTT TTGATATATT TTAATTTAGT CAAATTTGTT 000400
000401 AATGCTTTAA TTTATGCTTT TGAGTTTGTT GTAATTCAGG GAAAGGCTTT TCCAATTCTG AAATTCTTAA AAATTCTCTG 000480
000481 GTGTGCGTGT GTGTGTGTGT TTACTTTTAT AAATTCATTG ACTTTAAATA AATTTCTGAA CTTTTTTGAA CTTATGCTCT 000560
000561 ATAAGGTTCA AAGTTTTGCT TCAACTTTTT CTCCAGTTGG ATATCCACTT ACAGTAACCT TTTTAGTATA TGGACGTGCA 000640
000641 GGTTATTCTT TAACTTCAGA GGTAATCATG ATATGTTATT TTATTGAGTA CTAGCTAAAA CTTTCTTTTG TTTTATTTAG 000720
000721 GATTTTCGTA ATCACGAAGA AATGAAAGAT CTGATGGATG AAAATTGAAT TTTGAAGACA GATATTGCTA TACTCAGACA 000800
000801 GGAAATATGC ACAATGAAAA ATGACAACCT GGAAAAAGAA AATAAATATC TTAAGGACGT TAAAATTGTT AAAAAAACAA 000880
000881 ATGCTGCCCT TGAAAAGTAT ATAAAACTCA ATGAGGAATT GATAACAAAA ACAGCATTCC GGTATCAACA AGAGCTTAGT 000960
000961 GATCTCAAAG CTGAGAATAC AAGGCTCAAT TCCGAACTGT TGAAGGAAGA AGAAAGCAAC AAAAGACTGG AAGCTGAAAT 001040
001041 TGAATCATCA GTCTAGACTG ACTGCTGCTA TAAGTAAACA CAGTGAAAGT GTGAAAACAG AAAGAAACCT AAAACTTGCA 001120
001121 TTAGAGTGAA CACAAGATGT TTCCGTACAA GTAAAAATCA GTTCTGATAT TTCCGAAGTA GAAGATACGA ATGAGTTTCT 001200
001201 TACTGAACAA CTTTCTAAAA CGCAAATTAA ATTCAATACC TTAAAAGATA AGTTCCGTAA GAAAAGAGAT ACTCTCAGAA 001280
001281 AAAAGTCATT GGCTTTAGAA ACTCTCCAAA CGACCTAAGC CAAACACAGC AGCAAATAAA GGAAATGAAA GAGATGTATG 001360
001361 AAAATGCAGA AGCTAAAGTG AATAATTCCA CTGGAAAGTG GAGCTGTGTA GAAGAGAGGA TATGTCAACT CCAACATGAA 001440
001441 AATCCGTGCA TTGAACAGCA ACTAGATGAT GTTCATCAGA AAGAGGATCA TAAAGAGATA GTAACTAATA TCCAAAGAGG 001520
001521 CTTTATTGAG AGTGGAAAGA AAGACCTCAT GCTAGAAGAG AAAAATAAGA AGCTAATGAA TGAATGTGAT CATTTAAAAG 001600
001601 AAAGTCTCTT TCAATATGAG AGAGAGAAAG CAGAAAGAGT AGTGGTTGTG AGACAACTTC AACAAGAAGC GGCTGACAGC 001680
001681 CTAAAAAAAT TAACTATGTT AGAGTCTCCA CTGGAAGGCA TATCACATTA TCACATTAAT TTGGATGAGA CACAGGTCCC 001760
001761 AAAGAAGAAA TTATTTCAAG TGGAAAGTCA ATTTGATGAT TTTATGGCGG AGAAGGAAGC TGTATCTTCA AAATGTGTCA 001840
001841 ATTTGGCTAA AGAGATTCAA GTTTTTCAAC AGGAGTTATT ATCTATGAAA AAAGTACAAC AGGAATGTGA AAAACTTGAG 001920
001921 GAGGATAAAA AGATGTTGGA AGAAGAAATA TTAAATCTTA AGACACATAT GGAAAACAGT ATGGTAGAAC TTAGTAAACT 002000
002001 ACAAGAATAT AAATCAGAGC TAGATGAAAG GGCAATGCAG GCAGTAGAAA AATTAGAAGA AATCCATTTA CAGGAACAAG 002080
002081 CAGAACATAA AAAACAATTA GAGCAGTTAA ACAAGGATAT AATACAGCTT CACTAAATAA GAAGGAACTC ACACTTAAAG 002160
002161 ATGTGGAATG TAAATTCTAC AAAATGAAAA CTGCTTATGA AGAGGTTACA ACTGAGTTAG AAGAATATAA GGAAGCCTTT 002240
002241 GCAGCAGCAT TGAAAGCTAA TAGTTCCATG TCAAAAAAAT TAACTAAATC GAATAAGAAA ATAGCAATGA TCAGTATCAG 002320
002321 CTCTTTATGG AGAAAGAGCA GGTGAAATAT TTTCTCAGCA CTCTTCCTAC AAGGCGAGGT CGAGAGTCAC CTTGTGTTGA 002400
002401 AAATCTTACT AGTATAGGAC TCAACAGAAA ATATATTCCC CAAATGCCCC TGTTGCTGTA TTGGACACTT GCTCCCATCT 002480
002481 ACTTTCTTCT CTGGAATCCA CGGGATGTCA CCACAGTGTT GGCCAGATAC ACAGGTCACA GGGGACTGAA CCTCATCACC 002560
002561 CCACAAACAT ACCATTCAGG TTTTGCCAAG AATGACACTG TAAATGTAAC AAAGCTTCTG TGCTTGTTAG TGAACACCAA 002640
002641 CTCAGCTCCT CTCCTGTATT CAGAAATCAG GATGAGATGA AAACAACAAG CAGGCCAGGC ACGGTGGCTC ATGCCTGTAA 002720
002721 TCCCAGCACT TTGGGAGGCC GAGGCGGGTG GATCACTTCA GGTTGGGAGC TCGAGACCAC CCTGATCAAA ACAGAGAAAC 002800
002801 CCCATCTCTA CTGAAAATAC AAAATTAGCC AGGCGTGGTG GCAAATGCCT GTAATACCAG CTACTCAGGA ACTGAGGCAG 002880
002881 GAGAATTGCT TGAACCCGGG AGGTGGAGGC TGCAGTGAGC CGGGATCACA CCACTGCGCT CTAGCCTGGG CAACAAGAAC 002960
002961 GAAACTCTGT CTCAAAAGAA AAAAAATTAA AAATAAAAGA ACAAGGAAAC AAAAGTAACA AGGCTTGACA CCAGATGAGC 003040
003041 CTGAATCTAA GCAAGAAAAG CCCAGAAGAA ATCCCATTTT GGGTCACTGG CTGCATGGTA GTAATACCAT ACACATAAGG 003120
003121 GAAGAGAGGA GGATGTGGCT TTCACTTTGA ATTTTTTGAG CTTAAGGTAA CTTTTGCGTA GCTACAAAGA AGCATTCAAC 003200
003201 AGAGAGTTAA ACCTATGATG GAAAGACTGA AGGGGTCCAA GCTGTAGAGA AACAGGACTG CAAACCACAA AGGGCAGAAT 003280
003281 CAGTCAAGGA GAGCTGCAGG GCGGGATGAA CAGGGACCAA TGGAACATTT GGACAAGCTG TTGAGAAGAA AGGAAAATTC 003360
003361 AGAGAAAAAG AACTGTCAGT GAGGTCATAA TAGGAACTGT TACAGTGAAC TAAATATGGC CTGGGAAGGA CTCTGTACTT 003440
003441 CTAGATTTGA GTCCCTGTGG ACAAACTGCA ACCTAACTTA ATAGGTAGAA AGACTGATAA CCTAACTTTG GAGTATGCAC 003520
003521 CTGTAACTAT AGCTGAGTCC TGGCCAATCC CAACAGCCAA ACTTCTGCCA CTCACACACT GCTGAGTGTT CAGCTGTGTT 003600
003601 CAAATAAGGC AAATGCTGAG CACTGTAACC AGTCCAGTTG TTTCTGGACC TCACTGCTGA GAACGGTAAG GGACCCAGTT 003680
003681 GCTTCTGGAC CTCACTCCTC ACTTCAGATT TCTGTACATC ACGTTCCCTT TATTCTCTAT AAATCTTCCA CCATGTAGCT 003760
003761 GTGCTGGAGT CTCACCAAAT CTGCTGTGAT TCTGGGGGCT GCCTGATTCG TGAATCATTC ATTGCTCAAT TAAGTTTCTT 003840
003841 TAAATTTAAT TCAGCTGAAG ATTTTCTTTT AATAGATGGT GTCAGAAGTG GGATCTGTGG GAGCAGGACT GCTAGGGCCT 003920
003921 CCGGAGCTAT AGTGTGGTGA GCAGTGTTGC TAGGGCTTCT AATGACCCCC AGGAGTGCTG AGGTACAAGA AAGGCACCTG 004000
004001 CAAGGACCGC TCTATGATGG CAACAGTGGC CCATGTGGAG CAGTTGCTAC GGAGACACTG GCTGCAGTGG GGAGGAGTGG 004080
004081 CTGGGGCTGT GCACTCCTCA AAGTTAGTGG GAGCCAGGAA CGGGTGGGAG ACCCAGCCCT TCTAAATTGG CAAGCAGGAG 004160
004161 CCCCACCCTC CCAGGCACAG CTGCAGCCAT CCACCCATGA CAGCAAACCC AGGCATCTTT GCACTCTCAG AGGCCCAGCA 004240
004241 AGCCCCCCTG CCCCTGCAGG TCCAGTCATA CCTGCTCCTA CCACCTGGCA TCTCTCCGCT CCGAGAGCCC ACTCCAACTT 004320
004321 CGGATCCAAG TTGAGGTTGA ACCCAGGCAC AGTTGCAACC CAGCCCAGTT TGTGCAAGCT CAGGGCAGTG CTGACATGCC 004400
004401 AGCCCCCTGC CACCTCGGCC CTCTCCACAC TTTGGGAACT GATGAGCACA GGAGGGACAT TGAAGTGAGG CTAAGAGTGG 004480
004481 CTCAGCACTG GCCTGAAGGC ACTCCTCTGC TCGAAAAGCC TGGGCACTGT GGGCATAGCT AACCACCATG CATCTCTCTC 004560
004561 AGCTGCTGAG AGCTGAACAG ACGTTGGGAT GACCTGCCTG CAGAAAGGAG CTACCCACTG CACGTCTCCT CTGAGCTGTA 004640
004641 CTGTTGCTCA ATAAAGCACC TCTTCACCTT GCTCACCTTC TACTTGCCCA CATACCTCAT TCTTCCTGGA CTCAGGACAA 004720
004721 GAACTTGGGA CCTGCCAACT AGCAGGGCTG AAAGAGATGT AACATAAACA GGGCTGAAAC GCACCCCTTG CTTGCCAAAT 004800
004801 TGCAGGCAAG AAGAAGAGAA GAGAGAAGGA GACAAGAGCT TTGGCCCTTC AGGGAGCCCA GACCTAGGAG CTCCCCAAGC 004880
004881 CAGGGCTGTG ACACCTTATT TGGGGCTCTG CAGTTCCTGC ATCTCCAAGC TTCCAGGCAC CACTGCATTC CCTGATACCC 004960
004961 ACAGTGGAAG CTGTTTGCAG TCAGTCTGGT CCAGCTGCAG CCTCACAGGG AGCTGGCACC TGTGCCGGTA CCTGGAGCTG 005040
005041 CCCACCCCAC TGCAGCTGGC ATGCTTGGCT GTGTGCAGTG GCCAGATCCC ATGCTCACAT GCTCACACCC CCTTCACTGC 005120
005121 TCTGTACCCA GCTCACCCTT GGCAGGTGTG GGATCCAGAC CACTAGCATG AGCCGAGTGG ACAGAACGAA CACAGTGGGC 005200
005201 CCGAGCAAAA CACAGGATGT TCCAGCATAA GAAGATACCT TCTACTCAAG TCCTTGTTCC ACCTTTTCAA ATCTCACTGG 005280
005281 TCTATTTCCC AGTGGGTTTC TAAACCAAAC ACCCATAAAC TCAGAAAATA CAGTGTAAAA CAAAGTGAAG AACAAATAAA 005360
005361 CAACTCACCA GAGATTTATT CGTTTCTTGT TGCTCTTGGA AACACCCAGA GGACACTGGA AACATAGCTG GGATAGAAGG 005440
005441 CAAATGACGT GGATTAAGGA GAGAACTGGT GTGGTTTGGT CCCAGATTCT TCTGCCCAAC ACTCTAGACA CATTACCTGG 005520
005521 GAAAGCCCTC CTCCCTCCTG AAAAAGAAAA ACTTCCCCAG GGGAGAAGAA TCCTTCACGC CTCATTAGGG GCAGCAAAGA 005600
005601 CTCAAGTTAA GATAAGATAC ATCTACAAGT ACATTAATTG GTAGACATTA GATGCACAAT TTATTTTTGA ATAAAAATAT 005680
005681 ATATTACCTA CTAATTTAGT AACAATATTA TCTAAAGATA TAATCTAATA ATTTAATACA AAGAAACATT ATAAGTTCAC 005760
005761 TAAAATAAAT GTTATAGAAA TAT
[back to top]

Predicted Small Protein

Name ENST00000412204.2_smProtein_2183:2344
Length 54
Molecular weight 6029.9582
Aromaticity 0.0754716981132
Instability index 46.0452830189
Isoelectric point 9.75531005859
Runs 7
Runs residual 0.0281868384722
Runs probability 0.0297776768365
Amino acid sequence MKTAYEEVTTELEEYKEAFAAALKANSSMSKKLTKSNKKIAMISISSLWRKSR
Secondary structure LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHEEEEHHHHHHHLL
PRMN -
PiMo -