ENST00000411989.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000411989.1

Source

Gencode19

Same with

lnc-ERG-2:8,NONHSAT082120

Classification

intergenic

Length

1790 nt

Genomic location

chr21-:40110945..40114441

Exon number

4

Exons

40110945..40111253,40112240..40112338,40112808..40112992,40113245..40114441

Genome context

Sequence
000001 GACATGGGAC CAACATAGCT GCCATGATGA TCCAGAGACT CCTGCCCTGC AGTTGCCGAT TAAGGTCTGA GAAGTCCTAT 000080
000081 AGTCAAGAGA CCTACTTAAT TTCTATAAAC TCCATATTGC CAAACCTTTA TGTAATAAGT TTTGATACCT CTCAAAACTT 000160
000161 CTGCAGTCTA CACTTGTGGA AACACTATCG TTTCATAAAC CCAGCAATTC AATGTAAATT TATCATTGGC TTCCCTAAAG 000240
000241 TAATTGCTTG GGAGCTCTTG TGCTTGGAGA GTTTGGAAAC ACATTAGTCT TTTGCAGAAA CGAGTTAGGG CAGCTGGGGA 000320
000321 AGATGACCCT GTTTTCCCTC CCTTCTCTAC TTCTTCCTCA AATGACTGGT ATCTCGAATT TGCATAACGG AGGCCAAAAG 000400
000401 GTTTTGTGCT ACAATAAAAG ATAAGACTTG AAGAACAAGT CCCAGATATG ACCAGGAGCA TGCTTGAGAG TCAGCGACAT 000480
000481 GCAAGCGAAT GATATGAGAA GTAGCTTGAG GGTGGATCTT TGTCCAGGGA GGAGAAGGGT TGAGGGGCTC TTGGAACCTA 000560
000561 GATATTTGCA GTGGAAGCAG CACTGGGCTC CTTGGCAGAT GACTGCTCTT TGTACTCAGG ATAAAACCCA CATTTGCTGC 000640
000641 CCAGCATCTG AGGCCCTGCC TACCTTGGGG ATGTTGTAAT GTTTTTCTTC CCCCTTAGTT CCAGCCACAC TAAGGTTTTG 000720
000721 AGCCTGAGAT CACCAGGCTC CCTGAGTCCT TGGCCTGTAC CCTCACCTGC AATGTTGGTT TCCTCAACCC CTCAGATCTC 000800
000801 TTACTTAATG CCCCTTCCCT TTAAGGTGCC CCTTCACTTA ATTTAAGGGC ACCTCCCTTC CTGCTATCTT TTTATTTGTG 000880
000881 TGCTCTCTTG TTTCCTGTTT CCTGATTGAG AGTCACCTCC TGGATGGCAG TTCAGCTCTA CTGTGTCCCC ATTGGAGACG 000960
000961 CAGGCCCCAC TGCCAACCAC ACAAGAAATA GGCTCTGAAA TATTTGTTGG ATCCATGAAT GGTTGATTGG CTTTCATTGG 001040
001041 GCTGCTGGGA GGATTAAATT ATGAATGTAT AAAGGTGATT ACATCTCATT CCTATATACC CATTACATTG ATGGATAAGT 001120
001121 ATTAGGTTCT CTCTCCTCTT GCCAGGGACT TTAAGAAGCT GCTGAAGAAC CCAAGAGGAA GGTGGGAGCT GTTGATGGTG 001200
001201 TGGAATTAGA GGCCTGATGG AGTGGAGAGC TTTCCTCCTC ATCACCTGGG TCAGGACCAT GGAGCTCCTT GAGCCTTGAG 001280
001281 ATTCCAGGCC CAGGAGCACA TCATCATTGT GCTTCTTGGG GCCCAGGCGC ATCTCCTAAG AACTTGTTCT TAGACATGTT 001360
001361 GTGCTCAAAC TTGTGGCATC ATAGCAGTAA TAGTTTACAA TATACCTACA GTTTCCTGGG CAGATCATCG TGTGCAGACC 001440
001441 GGCTGCAGAG AGAAGGGAAC TGTTTCACTT TCATCTTCCT GGGCCATTTC CAGATATGAA TTGCAGAGAC ATATTTCAAT 001520
001521 ATATCCTCAC CCAAATATGC TTTAGAAGTA CATTTCTTTT AATGTAATAA GATTTATGTC CTTTGTGTTT GTTTAGAGGG 001600
001601 TAAATCTGGA TTTGTATTTT TAGAAGTTAC TTTCACCAAA GAAATTCGAA AGAAATAGTG TTTCAGAAAA ATCAAAACAA 001680
001681 GCCATAGAAA TCTAATATGT TTCAGATACT ATATTGGGCT GCATGAAGAC TAAATCCATA ATATGTATGA ATAATGTATT 001760
001761 CTAAAGTAAA TATCATATTT TGTCAAATTA
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Predicted Small Protein

Name ENST00000411989.1_smProtein_23:286
Length 88
Molecular weight 10285.0197
Aromaticity 0.126436781609
Instability index 45.6689655172
Isoelectric point 8.33441162109
Runs 14
Runs residual 0.0226600985222
Runs probability 0.0276326746915
Amino acid sequence MMIQRLLPCSCRLRSEKSYSQETYLISINSILPNLYVISFDTSQNFCSLHLWKHYRFINP
AIQCKFIIGFPKVIAWELLCLESLETH
Secondary structure LHHHHLLLLLLLLLLLLLLLLEEEEEEHHHLLLLEEEEEELLLHHHHHHHHHHHHHHHLH
HHHHHHHHLLHHHHHHHHHHHHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLHH
HHHHHHHHHHHHHHHHLLLLLLLLLLL
PiMo ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiTT
TTTTTTTTTTTTTTTTooooooooooo