ENST00000400221.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000400221.1 |
Source |
Gencode19 |
Same with |
lnc-CSF2RB-1:1,NONHSAT085136 |
Classification |
intergenic |
Length |
992 nt |
Genomic location |
chr22+:37361289..37364213 |
Exon number |
4 |
Exons |
37361289..37361554,37362431..37362548,37363209..37363629,37364027..37364213 |
Genome context |
|
Sequence |
000001 GACCTCTCAG ACACAACACC AGCACCATGG CCACTCCTAG AGCCTTAAAA GTCTCTCCAT TTTTATGCCT CCCACCACAC 000080
000081 TCTGCTTTCT CCTTCCCGCT CTGACTTTCC CTTCTCTGTT CCCCTCCTGG CCTCCCGAGC ACCTCAGCCA GGCCCTTAGG 000160 000161 CACCAGTGTC CTCAGGGGTC TCCAGGGCTC CTCTTCTCAT CCCGGTCTAC GTGCTCTGCT TTCAAGTTTG CAGGCTCTCT 000240 000241 CAGGTTTTAC CTAAAGGTTT TCCTAAAGTC TCACTCTGTT GCCCAGGCTG GAGTGCAGTG GCATGATCTC AGCTCACCAC 000320 000321 AACCTCCCCC TCCCAGGTTC AAGCAATTCT CGTGCCTCAG CATCCCGAGT AGCTGGGATT ACAGGCACAA TCCAGACAAG 000400 000401 ACATCCCAGC ACTGCTTCCA GACCTCTGCT TGAAGGTGGG ATTCTTCAAT CTCCTGGACA TTCTTAGAGT CTGGCTTTAC 000480 000481 ACCACGTCTC CTTTGCACGA TGGCAACACC AGCAGTATCT GCCCATGTGC AAGAGAGCCT CTGCAACAGC CCAATGGAGA 000560 000561 AATGGAGGAG TTTCCAGGCC CACGTGACAC TGAATCACAA TTGTCTTTTA CCGCTTGGGA TGATGATGCC ATCACTTTTC 000640 000641 TCTAATTTTT TTTTTTTTTT TTGAGGCAGC CTCACTGTCA CCCAGGCTGG AGTGTAGTGG CGTGATCTTG GCTTACTGAA 000720 000721 ACCTCCACCT CCCGGGTTCA AGTGATTCTC CTGCCTCAGC CTCCTGAGTA GCTGGGATTA TGCCTACTAT ATCTCCAGCC 000800 000801 TACAGAGACG GAATCTCGTT CTGTCACCCA GGCTGGAGTG CAGTAGCGCG ATCTCAGCTC ACTGCAACCT CCGCCTCCCC 000880 000881 GGTTCCAGGT TCAAGGAATT CTCCAGCCTC AGCCTCCCGA GTAGCTGGGA TTACAGGCCA TAGTCTGCTT TAAAAATAAT 000960 000961 AATAATAATA ATAAAAGACA ACAGTGAAGA AG |
Predicted Small Protein
Name | ENST00000400221.1_smProtein_779:952 |
Length | 58 |
Molecular weight | 5780.4271 |
Aromaticity | 0.0526315789474 |
Instability index | 74.1298245614 |
Isoelectric point | 10.6939086914 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0115311389821 |
Amino acid sequence | MPTISPAYRDGISFCHPGWSAVARSQLTATSASPVPGSRNSPASASRVAGITGHSLL |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHEELLLEEELLLLLLLLLLLLLLLHHHEELLLLLLLL |
PRMN | - |
PiMo | - |