ENST00000400221.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000400221.1

Source

Gencode19

Same with

lnc-CSF2RB-1:1,NONHSAT085136

Classification

intergenic

Length

992 nt

Genomic location

chr22+:37361289..37364213

Exon number

4

Exons

37361289..37361554,37362431..37362548,37363209..37363629,37364027..37364213

Genome context

Sequence
000001 GACCTCTCAG ACACAACACC AGCACCATGG CCACTCCTAG AGCCTTAAAA GTCTCTCCAT TTTTATGCCT CCCACCACAC 000080
000081 TCTGCTTTCT CCTTCCCGCT CTGACTTTCC CTTCTCTGTT CCCCTCCTGG CCTCCCGAGC ACCTCAGCCA GGCCCTTAGG 000160
000161 CACCAGTGTC CTCAGGGGTC TCCAGGGCTC CTCTTCTCAT CCCGGTCTAC GTGCTCTGCT TTCAAGTTTG CAGGCTCTCT 000240
000241 CAGGTTTTAC CTAAAGGTTT TCCTAAAGTC TCACTCTGTT GCCCAGGCTG GAGTGCAGTG GCATGATCTC AGCTCACCAC 000320
000321 AACCTCCCCC TCCCAGGTTC AAGCAATTCT CGTGCCTCAG CATCCCGAGT AGCTGGGATT ACAGGCACAA TCCAGACAAG 000400
000401 ACATCCCAGC ACTGCTTCCA GACCTCTGCT TGAAGGTGGG ATTCTTCAAT CTCCTGGACA TTCTTAGAGT CTGGCTTTAC 000480
000481 ACCACGTCTC CTTTGCACGA TGGCAACACC AGCAGTATCT GCCCATGTGC AAGAGAGCCT CTGCAACAGC CCAATGGAGA 000560
000561 AATGGAGGAG TTTCCAGGCC CACGTGACAC TGAATCACAA TTGTCTTTTA CCGCTTGGGA TGATGATGCC ATCACTTTTC 000640
000641 TCTAATTTTT TTTTTTTTTT TTGAGGCAGC CTCACTGTCA CCCAGGCTGG AGTGTAGTGG CGTGATCTTG GCTTACTGAA 000720
000721 ACCTCCACCT CCCGGGTTCA AGTGATTCTC CTGCCTCAGC CTCCTGAGTA GCTGGGATTA TGCCTACTAT ATCTCCAGCC 000800
000801 TACAGAGACG GAATCTCGTT CTGTCACCCA GGCTGGAGTG CAGTAGCGCG ATCTCAGCTC ACTGCAACCT CCGCCTCCCC 000880
000881 GGTTCCAGGT TCAAGGAATT CTCCAGCCTC AGCCTCCCGA GTAGCTGGGA TTACAGGCCA TAGTCTGCTT TAAAAATAAT 000960
000961 AATAATAATA ATAAAAGACA ACAGTGAAGA AG
[back to top]

Predicted Small Protein

Name ENST00000400221.1_smProtein_779:952
Length 58
Molecular weight 5780.4271
Aromaticity 0.0526315789474
Instability index 74.1298245614
Isoelectric point 10.6939086914
Runs 9
Runs residual 0.00394736842105
Runs probability 0.0115311389821
Amino acid sequence MPTISPAYRDGISFCHPGWSAVARSQLTATSASPVPGSRNSPASASRVAGITGHSLL
Secondary structure LLLLLLLLLLLLLLLLLLHHHEELLLEEELLLLLLLLLLLLLLLHHHEELLLLLLLL
PRMN -
PiMo -