ENST00000397057.2

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000397057.2

Source

Gencode19

Same with

lnc-TTC30B-1:2

Classification

intergenic

Length

5202 nt

Genomic location

chr2-:178148236..178257415

Exon number

9

Exons

178148236..178152562,178175692..178175763,178175961..178176056,178187967..178188124,178196300..178196384,178196870..178196979,178199121..178199257,178203326..178203427,178257301..178257415

Genome context

Sequence
000001 ACCGCGGCGA CTTGGCGGCG GGTGCCATGC GTCTGGAGCT TCACATTCTC TGCCCCCCAC CCACCGCGCC GGCGCTCCCT 000080
000081 TGTCACGCCT CGGGAAGCGC GCACCTGCCA AGCAGGATGA ATAATCTGAT ATCATGTGAA ATGAGGAAAT AAGAAGCTTT 000160
000161 CTGCTGACTT CATTTTGACC CAGGGTCCAA AAGGTGATGT AATCCTGTGG CAAGAAGATT CAAAACTGTG GACTATCTTG 000240
000241 CAAAAAATAC AAGAAGATAT TGAAAGTTTT CATGAGTGCC TACCACCTAA TCTCAAACAC TATCATTCAT ATGTGCCTCA 000320
000321 TTGAGCAAAT CTTTAATGAG GATCTATATG CCAGATAATG TAGGCATTGT TCCTAAGTCA TGCAGAGGGG TTGTGTAAGC 000400
000401 ATGGTCATTT GCATCATTAT CCTGCACGTC TGATACAGCC AAACTCCACG CCACCTGGTT TGCTCAACAG CAAAAGACAC 000480
000481 GGCCGGGTGC GGTGGCTCAC CCCTTTAATC CCAGCACTTT GGAAGGCCGA GGCGGGCGGA TCATTTGAGC AATATCTTTT 000560
000561 GCTTGGGAGC AGAAACAGAA AGTACATGAT GGACTTCATT GAAGGATGGA GATTTGGAAG ACATGAATGG ATGAAGAACC 000640
000641 AAGTGCGTGA GGGCACCTAT CAGGATTATT GCTGAAATCC TTATGGAGTT AACTGGCTGA GAGGAAGTAG AGATGGGGTT 000720
000721 TCACCATGTT GCCCAGGCTG GTCTCAAACT CCTGAGCTCA GGCCATCTGC CCGCCTCGGC CTCCCAAAGT GCTAGGATTA 000800
000801 CAGAAGGTGC CTGCTTCCCC TTCACCTTCC ACCATGATTG TAAGTTTCCT GAGGCCTCCC CAGACATGTG GAACTAACAG 000880
000881 GTTTCTCTTA TTGCCTGGAT CCAAGAGCAT CTCCTGGGTT CTTCCTGTTA GAATACTGAA TGTCCATGGA GAGTTTAACA 000960
000961 TAAGGAAGAA GAGGCCTGTC TCCCAGCTGA AACTGGTGCA GCAGATCATG CAAAGTAAAA CCTCAGCAGC TGTGATGAAG 001040
001041 TAGAGCAGAG GGCCTGGGTG TCTGTCAGCT CCAAGCGGAA GATTTCCCCA GCTTTCTAGG TAACTGTGCT TCCACTGAGC 001120
001121 AAGCCAGACA CAGACTTGAA TGTCATCACA ATCTGTGCCT GTGACATCTT TCCCCAAGAA TAGCACAAAT TGAACTTTTA 001200
001201 CATTCTTCAT AATATGGAAG GAAAGGTATT GACTGAGCCA CTTCTTTATG CCTCAAGACA TCTCATATGT ATTTATATGG 001280
001281 ATACATACAT GAATGTATAT ATTCTGTCAT AATAACATAT TCTATTTTTC TTATTATAGC ACAGTGTTAG GATAGGCTAC 001360
001361 ATAGGCTGCA TTAAACCCTC AAATAGAAGT TTATATTATG CATCAGAAGC CAGTGCAGGG ACTCTCCTCA GCACAACATC 001440
001441 TCTAAGTGGT GACTTGGAGG TTCAGGCTCC TTTCATCTTA AAATGCCATC ATCTTCAGCA TTTGGCCTCA ACAGTTGCCA 001520
001521 GAGAGGGAGA AGAGAGTATG TATAAGACCA CACTGCAGGA TCTGTGTTAG GTCTGCAAGC ACTGCTGTCA CCTCTGCCAA 001600
001601 ATCCCGTTAG CCAGAACCCA ATCATATGGC CCCATCCTAA CTGCAAGGGA AGCCTGGGAA AGGTCTTCTT GTATGCCAGG 001680
001681 AAAAGAAAAT GAAATCGACA AGTATCTAGC CAGTCTTTGC TACAAGTTTC TACATGTTGG AATTATTATC TATATTTTTC 001760
001761 TTCTGATCAT GCTTAGCATT TGATACTATG TAGACTGCCT TGTTGAGTCC TGCTGTATTT TGTGACATCC ACATGCAGCA 001840
001841 TCCCATTCCT CACAACAGGA CTAGGAGTGG TCAGAAGTTT TATCACCCAC TTTATGGACG GAAACCCTGA GACCCAGAGC 001920
001921 AGTTACATGG CTTGTCCAAA GTTACATAGT ACTGTTAACT TAAAAACACA ATTTATAAAT TTAGACAAAG AAAGAGGAGA 002000
002001 CTTTATTTCT TATAAAGGGT TATAGCCTTC AAAGTGGCTA TCTCACAGGC TGGGAAGCTC AGCCTTCAGC AGAAGCCCAG 002080
002081 AGACAAGCAT TTTGAAGGCA GAGGGGTTGG GATGGAGCTT TATGCTGAAC AGGTTGACTA AATATACATA TTCAACAGGT 002160
002161 TACAGGAGGA GCTATGAATA TTCATGAGGG TGGTCCTGAC ACATGCGTAT TGAACAAACA TACATGTAAC ACATGACCCA 002240
002241 TGTTCACTTT GGGATGGAGA CTTAACATTT CAATGTATTA CAGTTAGGCC CTACACATCA AAAGGTCATT TCAGGACACA 002320
002321 AAAGCTCACA AGTACACAAT CTCTGTAAAC TAGTCAGAAC CAGTCCATGG TTGGTGGTCT TATCAGGAAA AAGTTACTAA 002400
002401 AATTAGTCTC TCATCCAATG AAAGCTGTAG TTATGGCTGG TGGAACAGGG GTTCAGTTGG GCAGAGTCTA TGAGCAGGAT 002480
002481 GATTTGCAAT TGTTTAAATA TTGCTTATCT TGAGGCCAGT GCTTGTTTAG CTGCTGGAGA AAAAGAAAAT CCTTGTGGCA 002560
002561 GTTAGAGCAT AGTTTCTTCC TTAGGTGTAG GAGTACATGA CTTCCCCTCA CCTGGCATGG CCTTAGGTCC TGTTTATAAT 002640
002641 TCGGTATCTT ATTGCCACAA AGAATCTGTT CTGTGAGTCA TGTGATCTCT ATTGGAACAT TAATGCTGCT CAGTTGTTGT 002720
002721 GTCTAAACCA TAAAAGAGAA GGAGAGTATA ATTAGGCATG TCTGACCTCT CATCATAGCT GGGAACTAAG TCTTTAAATT 002800
002801 TTTTTCTGGG GTCCTCTTGG CCACAAGGGG GTCCATTTAG TCAGTGGGGG CCTTGGGATT TATTTTTAGT TTACATTGCT 002880
002881 AAGTGACAGA GCTTTGCTTC TTTCACTCTG AGGTTAGTGG TCTCTCTGCT GTGCCACATT GTCTTCCCCA GAAGCTCAAA 002960
002961 CTGGATGCCC AGCCCTCAGT GTACAAACTC AAGTATGCAA GAAATACATC TTTATTCTTT TATGAATATA CCTAATTTAT 003040
003041 ATGTTGGAAG GTGTCAGCAA TGAATTTGAT CACTTTGGTA TTTCTCTACC TTTAAAGATA TGTTTACATT TGGGGTGGGA 003120
003121 TGAAGGTTTG GTGGAGGGGA AGGTGGTCAG GTTGGGCCAA GGTATTGGGA AATCCATTTG TTCCTCATGT CAGCTGTTTG 003200
003201 AGGAGGCACC AACCCAGATG TCCACAGTTC CTTCTGGCCT TCCTTTACCG ATACTGATGC ACCTGTGCCT CCTTCCTGTG 003280
003281 TGCATGGCCC ATTTGTGCCC AGCATCTCCC TGCTATTTTG GGGCCACTCC AGGGTCTGGG AAGTTCTGTA GGCTTATAAC 003360
003361 ATACAGTCAT TCTTCTCCCC AGCTTGCTGC CTCCCTGAGA CACAGAGGTA GAGAAGTAGG AAAGGACCTA CCGTACCCAG 003440
003441 GCCTTTGCCC TCTCACTTTT CATCCATCCT TCTTCCCACC AGTGGAGGGA TGTGTTTCTA GTCTTCCAGG GAAGCTCCTC 003520
003521 TCTCCTCAAA CCATTTTCTT CCAAATACTT TGGCTTTATT CCAAATCCTC TCTAGTCCTC TGAGATTTTT TTATAACACA 003600
003601 AAACACAACT TACAGAAGTT GTGTTGTTGT TTTGCTGTTT ATCTTGTCAC ATTATTTCTC TACCTTGAGG CAACAGGACA 003680
003681 AGGGCCTGCT GTCCAGCGCA CGGAGGCAGG GAGGAAGGGG TAGGGGAATA CTAAGAAAAA AAAATTTCTC GATCACATGT 003760
003761 GTACCACATT TAACTTTATC AGGTCCTTGT GAGGTGAGTA TCTGTGTGTC ATTGTTCTGA AACTAACAGT GAGGGGACAA 003840
003841 AGCATTGATA GGAGTTCTTA CAATATATTT GGGAACTCGC AGGTGAGGGC CTCTCCTGCC TGATTGGTCT TTCAATGTAC 003920
003921 CATCCCAACC CACCCACCTC AATCCCCATG GCTTGATCCT GCTGTCTCGG TGATCAAGCT TTCAGTTAAG AATTGGGTGA 004000
004001 TAATGAGCTA GTTAATCCAA TTTAAAAAAA AAGAATTAGG ATCTGGGCTC AGAAGCCCCA CAGCTGTGAA AGCCTGGCCG 004080
004081 TAGATTACTA GTCTTCTAGA TGTAGAAAAG ATTTTTCCTT TCTCTGGCTA TTTAAGTCTT TATCAGTCAC CCTGCCTCAG 004160
004161 TTATCAACAC ACACCCTAGA GTAAATCTGT TCCCTGGGGG TGGAAATAGA AGGGGCATGT CATTGTACAT CCACACTGAT 004240
004241 GAAAGGAAAG GAAACATTAA GATGGCTTAA GTGGAAAGGT CACATACGGC TTGTACTAGA GAGACACCAT GCTAAAGCAA 004320
004321 AACATCGTTT AAAAAAATTC TGACTTATCA TGTGCTCAGA AATGCTCAAA TGGGTACAAC CATCACCAAG GGTGGGATGG 004400
004401 GAGGGCAGGG GAAAAAAATA TGAAGCATCA AAAAAAATTC TGATTTGTAT TTGTGAAATT CAATAGTAAC CCTATTCATT 004480
004481 AACTGGATTT TAAAATCATT TCAAAGCACA TTCGGCTTTC AAAAGATGTT TGTTTAAATA ATACAGTTGG CTTTTGGTCA 004560
004561 AAAAATGAAG TTTCGGTAAT GCATAGTAAC AACTGTAGTG TAATTACTGG CCACAAAATA CCAGGTGCCA GACCAACCCT 004640
004641 TTTCGAACCA TTTAAGAGAA CCAAGCCAAG CAAAAATGCC CAGCCTAGCC TTACCCAGAA GTTCAAAAGC TCAGCCTTTG 004720
004721 TCACCAGGAA AAAATTAATT CAAAGAGCAA AGCCATTATT CGGCACAACC AGGTATTCTG TTGTAAACAT CTTTTGTTAA 004800
004801 TACATGTTGA AAGCTGAACT TTCTCACGTT TGAGTGAAAG AGGGCTGCTT AAAGAGAGTT TAAACCAAGC CAGGTTCAAG 004880
004881 GTTTTTTTCT TTTCTTTCTT TTTAGATTTC TGACTTCATA TCTGTGGGAT CCACACAATG GGGAGGTACT GGCCTTGGAA 004960
004961 TCCATGGTTC CCCAGCTATC ATTTTACTTT AGAATTACAG TGTTCTCTGT TAGTGTCAAG GGAATGAACC TGACGAGAAA 005040
005041 AGACCAAACA TAGGACTGTT ACAGGGAAGA AAAATATGAA AAGACCTAAA GATGCACGTC CTCATTATAT GTAAGGAATC 005120
005121 TATTTCCTAG AATCCTATAA AAAGCTCAAG TGAATTTGCT TCAGTTAATA AATGTGATTT AATTATAATG ATAATGCCAC 005200
005201 AG
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Predicted Small Protein

Name ENST00000397057.2_smProtein_833:1042
Length 70
Molecular weight 7818.3512
Aromaticity 0.0579710144928
Instability index 48.7927536232
Isoelectric point 11.8541870117
Runs 11
Runs residual 0.0200889654183
Runs probability 0.0313789725555
Amino acid sequence MIVSFLRPPQTCGTNRFLLLPGSKSISWVLPVRILNVHGEFNIRKKRPVSQLKLVQQIMQ
SKTSAAVMK
Secondary structure LEEEELLLLLLLLLLEEEELLLLLEEEEEEEEEEEEELLEEEEEELLLHHHHHHHHHHHH
HHHHHHLLL
PRMN -
PiMo -