ENST00000397057.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000397057.2 |
Source |
Gencode19 |
Same with |
lnc-TTC30B-1:2 |
Classification |
intergenic |
Length |
5202 nt |
Genomic location |
chr2-:178148236..178257415 |
Exon number |
9 |
Exons |
178148236..178152562,178175692..178175763,178175961..178176056,178187967..178188124,178196300..178196384,178196870..178196979,178199121..178199257,178203326..178203427,178257301..178257415 |
Genome context |
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Sequence |
000001 ACCGCGGCGA CTTGGCGGCG GGTGCCATGC GTCTGGAGCT TCACATTCTC TGCCCCCCAC CCACCGCGCC GGCGCTCCCT 000080
000081 TGTCACGCCT CGGGAAGCGC GCACCTGCCA AGCAGGATGA ATAATCTGAT ATCATGTGAA ATGAGGAAAT AAGAAGCTTT 000160 000161 CTGCTGACTT CATTTTGACC CAGGGTCCAA AAGGTGATGT AATCCTGTGG CAAGAAGATT CAAAACTGTG GACTATCTTG 000240 000241 CAAAAAATAC AAGAAGATAT TGAAAGTTTT CATGAGTGCC TACCACCTAA TCTCAAACAC TATCATTCAT ATGTGCCTCA 000320 000321 TTGAGCAAAT CTTTAATGAG GATCTATATG CCAGATAATG TAGGCATTGT TCCTAAGTCA TGCAGAGGGG TTGTGTAAGC 000400 000401 ATGGTCATTT GCATCATTAT CCTGCACGTC TGATACAGCC AAACTCCACG CCACCTGGTT TGCTCAACAG CAAAAGACAC 000480 000481 GGCCGGGTGC GGTGGCTCAC CCCTTTAATC CCAGCACTTT GGAAGGCCGA GGCGGGCGGA TCATTTGAGC AATATCTTTT 000560 000561 GCTTGGGAGC AGAAACAGAA AGTACATGAT GGACTTCATT GAAGGATGGA GATTTGGAAG ACATGAATGG ATGAAGAACC 000640 000641 AAGTGCGTGA GGGCACCTAT CAGGATTATT GCTGAAATCC TTATGGAGTT AACTGGCTGA GAGGAAGTAG AGATGGGGTT 000720 000721 TCACCATGTT GCCCAGGCTG GTCTCAAACT CCTGAGCTCA GGCCATCTGC CCGCCTCGGC CTCCCAAAGT GCTAGGATTA 000800 000801 CAGAAGGTGC CTGCTTCCCC TTCACCTTCC ACCATGATTG TAAGTTTCCT GAGGCCTCCC CAGACATGTG GAACTAACAG 000880 000881 GTTTCTCTTA TTGCCTGGAT CCAAGAGCAT CTCCTGGGTT CTTCCTGTTA GAATACTGAA TGTCCATGGA GAGTTTAACA 000960 000961 TAAGGAAGAA GAGGCCTGTC TCCCAGCTGA AACTGGTGCA GCAGATCATG CAAAGTAAAA CCTCAGCAGC TGTGATGAAG 001040 001041 TAGAGCAGAG GGCCTGGGTG TCTGTCAGCT CCAAGCGGAA GATTTCCCCA GCTTTCTAGG TAACTGTGCT TCCACTGAGC 001120 001121 AAGCCAGACA CAGACTTGAA TGTCATCACA ATCTGTGCCT GTGACATCTT TCCCCAAGAA TAGCACAAAT TGAACTTTTA 001200 001201 CATTCTTCAT AATATGGAAG GAAAGGTATT GACTGAGCCA CTTCTTTATG CCTCAAGACA TCTCATATGT ATTTATATGG 001280 001281 ATACATACAT GAATGTATAT ATTCTGTCAT AATAACATAT TCTATTTTTC TTATTATAGC ACAGTGTTAG GATAGGCTAC 001360 001361 ATAGGCTGCA TTAAACCCTC AAATAGAAGT TTATATTATG CATCAGAAGC CAGTGCAGGG ACTCTCCTCA GCACAACATC 001440 001441 TCTAAGTGGT GACTTGGAGG TTCAGGCTCC TTTCATCTTA AAATGCCATC ATCTTCAGCA TTTGGCCTCA ACAGTTGCCA 001520 001521 GAGAGGGAGA AGAGAGTATG TATAAGACCA CACTGCAGGA TCTGTGTTAG GTCTGCAAGC ACTGCTGTCA CCTCTGCCAA 001600 001601 ATCCCGTTAG CCAGAACCCA ATCATATGGC CCCATCCTAA CTGCAAGGGA AGCCTGGGAA AGGTCTTCTT GTATGCCAGG 001680 001681 AAAAGAAAAT GAAATCGACA AGTATCTAGC CAGTCTTTGC TACAAGTTTC TACATGTTGG AATTATTATC TATATTTTTC 001760 001761 TTCTGATCAT GCTTAGCATT TGATACTATG TAGACTGCCT TGTTGAGTCC TGCTGTATTT TGTGACATCC ACATGCAGCA 001840 001841 TCCCATTCCT CACAACAGGA CTAGGAGTGG TCAGAAGTTT TATCACCCAC TTTATGGACG GAAACCCTGA GACCCAGAGC 001920 001921 AGTTACATGG CTTGTCCAAA GTTACATAGT ACTGTTAACT TAAAAACACA ATTTATAAAT TTAGACAAAG AAAGAGGAGA 002000 002001 CTTTATTTCT TATAAAGGGT TATAGCCTTC AAAGTGGCTA TCTCACAGGC TGGGAAGCTC AGCCTTCAGC AGAAGCCCAG 002080 002081 AGACAAGCAT TTTGAAGGCA GAGGGGTTGG GATGGAGCTT TATGCTGAAC AGGTTGACTA AATATACATA TTCAACAGGT 002160 002161 TACAGGAGGA GCTATGAATA TTCATGAGGG TGGTCCTGAC ACATGCGTAT TGAACAAACA TACATGTAAC ACATGACCCA 002240 002241 TGTTCACTTT GGGATGGAGA CTTAACATTT CAATGTATTA CAGTTAGGCC CTACACATCA AAAGGTCATT TCAGGACACA 002320 002321 AAAGCTCACA AGTACACAAT CTCTGTAAAC TAGTCAGAAC CAGTCCATGG TTGGTGGTCT TATCAGGAAA AAGTTACTAA 002400 002401 AATTAGTCTC TCATCCAATG AAAGCTGTAG TTATGGCTGG TGGAACAGGG GTTCAGTTGG GCAGAGTCTA TGAGCAGGAT 002480 002481 GATTTGCAAT TGTTTAAATA TTGCTTATCT TGAGGCCAGT GCTTGTTTAG CTGCTGGAGA AAAAGAAAAT CCTTGTGGCA 002560 002561 GTTAGAGCAT AGTTTCTTCC TTAGGTGTAG GAGTACATGA CTTCCCCTCA CCTGGCATGG CCTTAGGTCC TGTTTATAAT 002640 002641 TCGGTATCTT ATTGCCACAA AGAATCTGTT CTGTGAGTCA TGTGATCTCT ATTGGAACAT TAATGCTGCT CAGTTGTTGT 002720 002721 GTCTAAACCA TAAAAGAGAA GGAGAGTATA ATTAGGCATG TCTGACCTCT CATCATAGCT GGGAACTAAG TCTTTAAATT 002800 002801 TTTTTCTGGG GTCCTCTTGG CCACAAGGGG GTCCATTTAG TCAGTGGGGG CCTTGGGATT TATTTTTAGT TTACATTGCT 002880 002881 AAGTGACAGA GCTTTGCTTC TTTCACTCTG AGGTTAGTGG TCTCTCTGCT GTGCCACATT GTCTTCCCCA GAAGCTCAAA 002960 002961 CTGGATGCCC AGCCCTCAGT GTACAAACTC AAGTATGCAA GAAATACATC TTTATTCTTT TATGAATATA CCTAATTTAT 003040 003041 ATGTTGGAAG GTGTCAGCAA TGAATTTGAT CACTTTGGTA TTTCTCTACC TTTAAAGATA TGTTTACATT TGGGGTGGGA 003120 003121 TGAAGGTTTG GTGGAGGGGA AGGTGGTCAG GTTGGGCCAA GGTATTGGGA AATCCATTTG TTCCTCATGT CAGCTGTTTG 003200 003201 AGGAGGCACC AACCCAGATG TCCACAGTTC CTTCTGGCCT TCCTTTACCG ATACTGATGC ACCTGTGCCT CCTTCCTGTG 003280 003281 TGCATGGCCC ATTTGTGCCC AGCATCTCCC TGCTATTTTG GGGCCACTCC AGGGTCTGGG AAGTTCTGTA GGCTTATAAC 003360 003361 ATACAGTCAT TCTTCTCCCC AGCTTGCTGC CTCCCTGAGA CACAGAGGTA GAGAAGTAGG AAAGGACCTA CCGTACCCAG 003440 003441 GCCTTTGCCC TCTCACTTTT CATCCATCCT TCTTCCCACC AGTGGAGGGA TGTGTTTCTA GTCTTCCAGG GAAGCTCCTC 003520 003521 TCTCCTCAAA CCATTTTCTT CCAAATACTT TGGCTTTATT CCAAATCCTC TCTAGTCCTC TGAGATTTTT TTATAACACA 003600 003601 AAACACAACT TACAGAAGTT GTGTTGTTGT TTTGCTGTTT ATCTTGTCAC ATTATTTCTC TACCTTGAGG CAACAGGACA 003680 003681 AGGGCCTGCT GTCCAGCGCA CGGAGGCAGG GAGGAAGGGG TAGGGGAATA CTAAGAAAAA AAAATTTCTC GATCACATGT 003760 003761 GTACCACATT TAACTTTATC AGGTCCTTGT GAGGTGAGTA TCTGTGTGTC ATTGTTCTGA AACTAACAGT GAGGGGACAA 003840 003841 AGCATTGATA GGAGTTCTTA CAATATATTT GGGAACTCGC AGGTGAGGGC CTCTCCTGCC TGATTGGTCT TTCAATGTAC 003920 003921 CATCCCAACC CACCCACCTC AATCCCCATG GCTTGATCCT GCTGTCTCGG TGATCAAGCT TTCAGTTAAG AATTGGGTGA 004000 004001 TAATGAGCTA GTTAATCCAA TTTAAAAAAA AAGAATTAGG ATCTGGGCTC AGAAGCCCCA CAGCTGTGAA AGCCTGGCCG 004080 004081 TAGATTACTA GTCTTCTAGA TGTAGAAAAG ATTTTTCCTT TCTCTGGCTA TTTAAGTCTT TATCAGTCAC CCTGCCTCAG 004160 004161 TTATCAACAC ACACCCTAGA GTAAATCTGT TCCCTGGGGG TGGAAATAGA AGGGGCATGT CATTGTACAT CCACACTGAT 004240 004241 GAAAGGAAAG GAAACATTAA GATGGCTTAA GTGGAAAGGT CACATACGGC TTGTACTAGA GAGACACCAT GCTAAAGCAA 004320 004321 AACATCGTTT AAAAAAATTC TGACTTATCA TGTGCTCAGA AATGCTCAAA TGGGTACAAC CATCACCAAG GGTGGGATGG 004400 004401 GAGGGCAGGG GAAAAAAATA TGAAGCATCA AAAAAAATTC TGATTTGTAT TTGTGAAATT CAATAGTAAC CCTATTCATT 004480 004481 AACTGGATTT TAAAATCATT TCAAAGCACA TTCGGCTTTC AAAAGATGTT TGTTTAAATA ATACAGTTGG CTTTTGGTCA 004560 004561 AAAAATGAAG TTTCGGTAAT GCATAGTAAC AACTGTAGTG TAATTACTGG CCACAAAATA CCAGGTGCCA GACCAACCCT 004640 004641 TTTCGAACCA TTTAAGAGAA CCAAGCCAAG CAAAAATGCC CAGCCTAGCC TTACCCAGAA GTTCAAAAGC TCAGCCTTTG 004720 004721 TCACCAGGAA AAAATTAATT CAAAGAGCAA AGCCATTATT CGGCACAACC AGGTATTCTG TTGTAAACAT CTTTTGTTAA 004800 004801 TACATGTTGA AAGCTGAACT TTCTCACGTT TGAGTGAAAG AGGGCTGCTT AAAGAGAGTT TAAACCAAGC CAGGTTCAAG 004880 004881 GTTTTTTTCT TTTCTTTCTT TTTAGATTTC TGACTTCATA TCTGTGGGAT CCACACAATG GGGAGGTACT GGCCTTGGAA 004960 004961 TCCATGGTTC CCCAGCTATC ATTTTACTTT AGAATTACAG TGTTCTCTGT TAGTGTCAAG GGAATGAACC TGACGAGAAA 005040 005041 AGACCAAACA TAGGACTGTT ACAGGGAAGA AAAATATGAA AAGACCTAAA GATGCACGTC CTCATTATAT GTAAGGAATC 005120 005121 TATTTCCTAG AATCCTATAA AAAGCTCAAG TGAATTTGCT TCAGTTAATA AATGTGATTT AATTATAATG ATAATGCCAC 005200 005201 AG |
Predicted Small Protein
Name | ENST00000397057.2_smProtein_833:1042 |
Length | 70 |
Molecular weight | 7818.3512 |
Aromaticity | 0.0579710144928 |
Instability index | 48.7927536232 |
Isoelectric point | 11.8541870117 |
Runs | 11 |
Runs residual | 0.0200889654183 |
Runs probability | 0.0313789725555 |
Amino acid sequence | MIVSFLRPPQTCGTNRFLLLPGSKSISWVLPVRILNVHGEFNIRKKRPVSQLKLVQQIMQ SKTSAAVMK |
Secondary structure | LEEEELLLLLLLLLLEEEELLLLLEEEEEEEEEEEEELLEEEEEELLLHHHHHHHHHHHH HHHHHHLLL |
PRMN | - |
PiMo | - |