http://192.168.164.12:8010/api.php?action=feedcontributions&user=124.202.190.20&feedformat=atomLncRNAWiki - User contributions [en]2024-03-29T07:45:33ZUser contributionsMediaWiki 1.30.0https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-BSPH1-2:1&diff=890623Lnc-BSPH1-2:12014-10-11T02:34:14Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
snaR: small NF90-associated RNAs<br />
<br />
===Characteristics===<br />
~117nt. RNA polymerase III transcripts. Highly structured. snaR genes shares sequence identity with Alu RNA and two potential piRNAs. Cloned snaR sequences have a run of adenines in the 3' end followed by a run of thymidines (which presumably constitute the PolIII termination site) [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))]. snaR-A and snaR-B were originally identified associated to the Nuclear factor 90 (NF90) (a double-stranded RNA-binding protein implicated in multiple cellular functions) by in vivo cross-linking followed by immunoprecipitation.RNA species immunoprecipitated with NF90 were ~80®C120 nt long [http://www.ncbi.nlm.nih.gov/pubmed/17913627 (Parrott (2007))]. Several related RNAs of ~104 nt were originally cloned and identified, with snaR-A being the major component, and snaR-B representing the minor subset. snaR-A and snaR-B are ~90% identical in sequence. Human genomic sequences corresponding to snaR-A and snaR-B have occasional mismatches (suggested to be possibly due to C-to-U editing of the RNA). snaR genes occur in multiple copies (accumulated by segmental duplication) arranged in two inverted regions of tandem repeats on human chromosome 19. Additional snaR gene copies are present, with two of them adjacent to genes encoding the beta chain of chorionic gonadotropin:. In total, 28 snaR genes have been identified in the human genome, including 14 genes for snaR-A and 2 genes for snaR-B. snaR genes identified by sequence analysis include 5 snaR-C genes and additional genes (snaR-D, -E, -F, -G1, -G2, -H, -I, -12 and -21) [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))]. snaR-D to -G include 5 unique genes on chromosome 19 as well as single copies (snaR-2 and -3) on chromosomes 2 and 3. snaR-G1 and -G2 are located in a gene-rich 2.1 Mb genomic fragment between the two clusters, lying within the promoter region of two genes encoding the beta polypeptide of chorionic gonadotropin (CG-beta) [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))].<br />
<br />
===Function===<br />
Functions of snaR transcripts have not been identified yet. snaR transcripts interact with NF90's double-stranded RNA-binding motifs (dsRBMs) [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))], and snaR-A is also found stably bound to ribosomes in HeLa cells (Parrott et al. 2010). Suggested to be involved in tissue- and species-specific regulation of cell growth and translation ([http://www.ncbi.nlm.nih.gov/pubmed/17855395 Parrott (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/20028844 Parrott (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/20935053 Parrott (2010)]).<br />
<br />
===Expression===<br />
Predominantly cytoplasmic, unstable (half-life of ~15 min in HeLa cells), expressed in diverse cell lines and human tissues. The different snaR genes have different expression levels and profiles, and, among more than 20 adult human tissues analysed, snaR transcripts are found particularly abundant in testis, with low levels detected in brain, placenta and some other organs. [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/20935053 Parrott (2010)]). Highly abundant in some cells, with snaR-A estimated in ~70,000 copies in a HEK293T cell [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))]. snaR-A and snaR-G2 are differentially expressed in discrete regions of the human brain and other tissues, such as testis [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. snaR-A was expression n testis was ~100-fold higher than in term placenta, lung and adipose tissue, and in brain its levels were ~10% of the testis level in three of four segments of pituitary gland, with substantial expression also observed in other brain regions (such as hypothalamus, globus pallidus and thalamus) [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. snaR-G2 levels in adult brain were ~55% of that in testis (highest in caudate/accumbens/putamen and globus pallidus), and several tissues displayed 5®C15% of testis levels. Fetal brain contained much less snaR-G2 than adult brain (~3% of testis level), suggestive of developmental regulation. [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. snaR-A is up-regulated in transformed and immortalized human cells (Parrott et al. 2010).<br />
<br />
===Conservation===<br />
snaR genes are present exclusively in African Great Apes and some are unique to humans. Human snaR-A has orthologs in chimpanzee but not rhesus macaque or mouse. Chimpanzee has fewer snaR genes than humans (10 instead of 28). snaRs appear to have undergone accelerated evolution (snaR genes display a lower degree of homology within the gene than in their flanking sequence) and differential expansion in the great apes. ([http://www.ncbi.nlm.nih.gov/pubmed/17855395 Parrott (2007)], Parrott et al. 2010). There are ~17 nt changes between human snaR-A (121nt) and snaR-C (119nt) species (~14% difference), compared to an average substitution rate of ~3.7?nt per 120nt (~3% difference) outside of the snaR locus [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. The single snaR gene on chimpanzee chromosome 2a is 94% identical with its ortholog on human chromosome 2, and two genes on chimpanzee chromosome 19 are orthologous with snaR-G1 (a unique gene on human chromosome 19). The position of these snaR genes relative to the primate-specific CG-beta genes is conserved. [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))].<br />
<br />
===Misc===<br />
*Two families of snaR-related genetic elements were identified in primates: CAS (catarrhine ancestor of snaR), limited to Old World Monkeys and apes; and ASR (Alu/snaR-related), present in all monkeys and apes. These two classes appear to have spread by retrotransposition. It has been proposed that snaR genes evolved through a series of internal deletions and expansions from the left monomer of the primate-specific Alu SINE family via ASR and CAS [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. *Short RNAs of ~26®C34 nt can be detected after long exposure of Northern blots with snaR probes [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))]. *Other RNAs are also found associated with NF90, including viral RNAs, such as the VAI and VAII noncoding RNAs from human adenoviruses [http://www.ncbi.nlm.nih.gov/pubmed/9671709 (Liao (1998))].<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-BSPH1-2:1|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intergenic|<br />
length = 122 nt|<br />
location = chr19-:48437437..48437559|<br />
number = ,|<br />
exons = ,|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr19:48437437..48437559&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CCGGAGCCATTGTGGCTCAGGCCGGTTGCGCCTGCCCTCGGGCCCTCACGGAGGCGGGGGTTCCAGGGCACGAGTTCGAGGCCAGCCTGGTCCACATGGGTCGGAAAAAAGGACTTTTTTTT</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-BSPH1-1:1&diff=890622Lnc-BSPH1-1:12014-10-11T02:32:39Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
snaR: small NF90-associated RNAs<br />
<br />
===Characteristics===<br />
~117nt. RNA polymerase III transcripts. Highly structured. snaR genes shares sequence identity with Alu RNA and two potential piRNAs. Cloned snaR sequences have a run of adenines in the 3' end followed by a run of thymidines (which presumably constitute the PolIII termination site) [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))]. snaR-A and snaR-B were originally identified associated to the Nuclear factor 90 (NF90) (a double-stranded RNA-binding protein implicated in multiple cellular functions) by in vivo cross-linking followed by immunoprecipitation.RNA species immunoprecipitated with NF90 were ~80®C120 nt long [http://www.ncbi.nlm.nih.gov/pubmed/17913627 (Parrott (2007))]. Several related RNAs of ~104 nt were originally cloned and identified, with snaR-A being the major component, and snaR-B representing the minor subset. snaR-A and snaR-B are ~90% identical in sequence. Human genomic sequences corresponding to snaR-A and snaR-B have occasional mismatches (suggested to be possibly due to C-to-U editing of the RNA). snaR genes occur in multiple copies (accumulated by segmental duplication) arranged in two inverted regions of tandem repeats on human chromosome 19. Additional snaR gene copies are present, with two of them adjacent to genes encoding the beta chain of chorionic gonadotropin:. In total, 28 snaR genes have been identified in the human genome, including 14 genes for snaR-A and 2 genes for snaR-B. snaR genes identified by sequence analysis include 5 snaR-C genes and additional genes (snaR-D, -E, -F, -G1, -G2, -H, -I, -12 and -21) [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))]. snaR-D to -G include 5 unique genes on chromosome 19 as well as single copies (snaR-2 and -3) on chromosomes 2 and 3. snaR-G1 and -G2 are located in a gene-rich 2.1 Mb genomic fragment between the two clusters, lying within the promoter region of two genes encoding the beta polypeptide of chorionic gonadotropin (CG-beta) [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))].<br />
<br />
===Function===<br />
Functions of snaR transcripts have not been identified yet. snaR transcripts interact with NF90's double-stranded RNA-binding motifs (dsRBMs) [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))], and snaR-A is also found stably bound to ribosomes in HeLa cells (Parrott et al. 2010). Suggested to be involved in tissue- and species-specific regulation of cell growth and translation ([http://www.ncbi.nlm.nih.gov/pubmed/17855395 Parrott (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/20028844 Parrott (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/20935053 Parrott (2010)]).<br />
<br />
===Expression===<br />
Predominantly cytoplasmic, unstable (half-life of ~15 min in HeLa cells), expressed in diverse cell lines and human tissues. The different snaR genes have different expression levels and profiles, and, among more than 20 adult human tissues analysed, snaR transcripts are found particularly abundant in testis, with low levels detected in brain, placenta and some other organs. ([http://www.ncbi.nlm.nih.gov/pubmed/17855395 Parrott (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/20935053 Parrott (2010)]). Highly abundant in some cells, with snaR-A estimated in ~70,000 copies in a HEK293T cell [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))]. snaR-A and snaR-G2 are differentially expressed in discrete regions of the human brain and other tissues, such as testis [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. snaR-A was expression n testis was ~100-fold higher than in term placenta, lung and adipose tissue, and in brain its levels were ~10% of the testis level in three of four segments of pituitary gland, with substantial expression also observed in other brain regions (such as hypothalamus, globus pallidus and thalamus) [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. snaR-G2 levels in adult brain were ~55% of that in testis (highest in caudate/accumbens/putamen and globus pallidus), and several tissues displayed 5®C15% of testis levels. Fetal brain contained much less snaR-G2 than adult brain (~3% of testis level), suggestive of developmental regulation. [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. snaR-A is up-regulated in transformed and immortalized human cells (Parrott et al. 2010).<br />
<br />
===Conservation===<br />
snaR genes are present exclusively in African Great Apes and some are unique to humans. Human snaR-A has orthologs in chimpanzee but not rhesus macaque or mouse. Chimpanzee has fewer snaR genes than humans (10 instead of 28). snaRs appear to have undergone accelerated evolution (snaR genes display a lower degree of homology within the gene than in their flanking sequence) and differential expansion in the great apes. ([http://www.ncbi.nlm.nih.gov/pubmed/17855395 Parrott (2007)], Parrott et al. 2010). There are ~17 nt changes between human snaR-A (121nt) and snaR-C (119nt) species (~14% difference), compared to an average substitution rate of ~3.7?nt per 120nt (~3% difference) outside of the snaR locus [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. The single snaR gene on chimpanzee chromosome 2a is 94% identical with its ortholog on human chromosome 2, and two genes on chimpanzee chromosome 19 are orthologous with snaR-G1 (a unique gene on human chromosome 19). The position of these snaR genes relative to the primate-specific CG-beta genes is conserved. [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))].<br />
<br />
===Misc===<br />
*Two families of snaR-related genetic elements were identified in primates: CAS (catarrhine ancestor of snaR), limited to Old World Monkeys and apes; and ASR (Alu/snaR-related), present in all monkeys and apes. These two classes appear to have spread by retrotransposition. It has been proposed that snaR genes evolved through a series of internal deletions and expansions from the left monomer of the primate-specific Alu SINE family via ASR and CAS [http://www.ncbi.nlm.nih.gov/pubmed/20935053 (Parrott (2010))]. *Short RNAs of ~26®C34 nt can be detected after long exposure of Northern blots with snaR probes [http://www.ncbi.nlm.nih.gov/pubmed/17855395 (Parrott (2007))]. *Other RNAs are also found associated with NF90, including viral RNAs, such as the VAI and VAII noncoding RNAs from human adenoviruses [http://www.ncbi.nlm.nih.gov/pubmed/9671709 (Liao (1998))].<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-BSPH1-1:1|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intergenic|<br />
length = 119 nt|<br />
location = chr19-:48437437..48437559|<br />
number = ,|<br />
exons = ,|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr19:48437437..48437559&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>TGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACTCTCAGGGTAGGCGAGGGTTCGAGGGCACGAGTTCGAGGCCAACCTGGTCCACATGGGTTGAAAAAAAAATTTTTTT</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT122932&diff=890621NONHSAT1229322014-10-11T02:31:03Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
ST7OT<br />
Characteristics <br />
<br />
===Characteristics===<br />
Four noncoding RNAs from the RAY1/ST7 gene locus. Complex gene locus with a large number of coding and noncoding isoforms. ST7OT1 & 2 are antisense to ST7. ST7OT3 & 4 are on the sense strand. ST7OT1 - ~2kb unspliced antisense transcript that initiates in intron 1 of ST7, covers the first exon and terminates in the ST7 promoter region. Polyadenylated. Nb: it also overlaps exon 1 of ST7OT4. ST7OT2 - Spliced antisense transcripts. Multiple isoforms that share either some 5' or some 3' exons. Isoforms are between 900-1300 bp, with 4-6 exons and polyadenlyated. ST7OT3 - Spliced ~1kb transcript. Begins in intron 10 of ST7, shares exons 11-13 and sometimes 14 & 15 with ST7 plus has a number of unique exons. Some exons may also act as a alternative 3' end for ST7. ST7OT4 - Multiple spliced transcripts within the long first intron of ST7. However, Refseq ST7OT4 transcript may be protein coding. Transcription begins just ~200bp downstream from the end of first ST7 exon.<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
ST7OT1 - abundantly expressed in testis, also expressed in cerebellum, skeletal muscle, uterus, cerebellum, spinal cord, fetal brain, and prostate. ST7OT2 - testis, fetal brain, cerebellum, mammary gland, fibroblasts. ST7OT3 - expression only detected in cerebellum. ST7OT4 - no expression detected.<br />
<br />
===Conservation===<br />
ST7OT1 - some conserved sequence with mouse, most of this is where ST7OT1 overlaps the first exon of ST7 however. ST7OT2 - 3' end of some isoforms shows some conservation with mouse. ST7OT3 - some conserved sequence, most of this is shared exons with ST7 though. ST7OT4 - sequence not conserved with mouse.<br />
<br />
===Misc===<br />
ST7OT1 - NCBI Gene ID: 93653. ST7OT2 - NCBI Gene ID: 93654. ST7OT3 - NCBI Gene ID: 93655. ST7OT4 - NCBI Gene ID: 338069<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT122932|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = sense|<br />
length = 1052 nt|<br />
location = chr7+:116822735..116849991|<br />
number = 9|<br />
exons = 116822735..116822799,116824179..116824253,116829375..116829447,116830187..116830322,116830888..116830990,116831689..116831815,116838374..116838589,116839125..116839198,116849841..116849991|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr7:116822735..116849991&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>TGGTATTCAGAGACGTAGAGTGGCACAGCTCCTCAGACTGCACGTTTTCCCTGAGCTCTCTACTGGAAAACATTTCTATAAAACATAAGATGGCAAAGAGGTGGAAGAAAAATTAATGCCAGCAGTTCAGCTTTGACTAAATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAAATCGCCAGTACCTACTGCAACATCTTTTCTCCCTACACAGCGACTCCAGCTTGGGAGGGCAGGGCCAGGGTTGTCACAGCTTCCCCTGTGGTGTCTGCCTGCCAAGCACAGCTCTGGAGTTAGCCCTGGGTGTGAGATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTCATGTGCCAAAATATCTACATGCTGTATTACGTAATTATCATCTTCTCTGAGGGAGGAAAAAAAGTAGCTGAGAGCCACTTTCAGTCCCGCTATTAAGTACATTTTGGCCTCTAAGAAACTTCGTGTGGTTCACCTCAGGCTAGGTGGAAATAGAGGCTGCCTAGAAACATGCATTAACAGGTGCTTCTTGGGCCACCCTAGCCTGAAGAAGGACAACCAGAGAGTATAACAGTGGCACCTCAATGCCTTGGCCTTGAGGACCCTCAGTGTCCCTTCAGGCCTCCAGATTTGAGGGGAGGCTCTAGCATGTTCTGGCTGCAGCTATTGTCTTCAGGGATTCTGCAGCTTGTAGCTCGTTGGGGTACTTCTACCAATTGGAGCTGGGCTGTTGGAGTCATCTCCACTGCCTACCACCAGGACAAGCAGAGAAGTTACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGAAAAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Sense]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT122914&diff=890620NONHSAT1229142014-10-11T02:29:57Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
ST7OT <br />
<br />
===Characteristics===<br />
Four noncoding RNAs from the RAY1/ST7 gene locus. Complex gene locus with a large number of coding and noncoding isoforms. ST7OT1 & 2 are antisense to ST7. ST7OT3 & 4 are on the sense strand. ST7OT1 - ~2kb unspliced antisense transcript that initiates in intron 1 of ST7, covers the first exon and terminates in the ST7 promoter region. Polyadenylated. Nb: it also overlaps exon 1 of ST7OT4. ST7OT2 - Spliced antisense transcripts. Multiple isoforms that share either some 5' or some 3' exons. Isoforms are between 900-1300 bp, with 4-6 exons and polyadenlyated. ST7OT3 - Spliced ~1kb transcript. Begins in intron 10 of ST7, shares exons 11-13 and sometimes 14 & 15 with ST7 plus has a number of unique exons. Some exons may also act as a alternative 3' end for ST7. ST7OT4 - Multiple spliced transcripts within the long first intron of ST7. However, Refseq ST7OT4 transcript may be protein coding. Transcription begins just ~200bp downstream from the end of first ST7 exon.<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
ST7OT1 - abundantly expressed in testis, also expressed in cerebellum, skeletal muscle, uterus, cerebellum, spinal cord, fetal brain, and prostate. ST7OT2 - testis, fetal brain, cerebellum, mammary gland, fibroblasts. ST7OT3 - expression only detected in cerebellum. ST7OT4 - no expression detected.<br />
<br />
===Conservation===<br />
ST7OT1 - some conserved sequence with mouse, most of this is where ST7OT1 overlaps the first exon of ST7 however. ST7OT2 - 3' end of some isoforms shows some conservation with mouse. ST7OT3 - some conserved sequence, most of this is shared exons with ST7 though. ST7OT4 - sequence not conserved with mouse.<br />
<br />
===Misc===<br />
ST7OT1 - NCBI Gene ID: 93653. ST7OT2 - NCBI Gene ID: 93654. ST7OT3 - NCBI Gene ID: 93655. ST7OT4 - NCBI Gene ID: 338069<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT122914|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 1908 nt|<br />
location = chr7-:116592500..116594388|<br />
number = 1|<br />
exons = 116592500..116594388|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr7:116592500..116594388&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>TACACTCCCAAGAGTGCCTTCGGGAACCCCTCTCCCCACTACCCAACCAGAGAGACAGCCCCACGCCCGGCAAGACGCAACTCCGGGCCACGGAGGGCGCCGCCCGGACAGCCCGGCCGGGTCAGGGGGCTTCGCCGCCGAGCACCCTCCGGCAGCCGCCCTCGGGCCTCCGCGGCCGGGCGGGAGGGCGCCTCCCCGACCACACTTCGGCCGCTTGGCACCCACAGCCGGGAGGGCGTGAGGAAGGACTCGGTCTAACTCCGGGGAACCCTCGGAGTTCCGGCGCAGACACCCGAGGGGGTGTCCTGGGAACTCCTTCGCCCGCGACACCCGTTCTTCTCCGTCTCCCGACCACCAGCGACGCAGCAGGGCGGCTGCCGGCCCGGCCCGGCCCGCCTTGCGGGCTGTGCGCGGCGCAGCTCTTCCTCCGCGGGGCCGTGAAGGCCACCGGCCGCCCCCGCGCGCCCAGCTGCCCGGCCCCGCCGCCTAAGCCGCCGCGTTGCTGGCGGGTAGCCGCGGGCCTCCGGTGCGCGGGCCCCGGCGCGTCCCCGAGCGCGCGCCTGGCCGCGGCCCCGCGCGAGTTGCACTAACTTTCCGGGGCGGGGGAGGGGTGGGCGCCGCGGGCCCGGCTCCCAGGCCTTACCTGTGCTCAAGTTGTCGTTGATTTTCAAAGGCACCCGCAGGATGTAGACCAGGAATAGCACGATGAAGAACCACACGGTCCACAGATACGTCCAAGACCAAACTATGCAGGACTTGAGCTGCTCCAGAAAGCCCGTGGCCGCTTCAGCCATGTTTCAGCGCTCCTCTCTGCTGCCGCGGCTCTTGGTGTCTGCCGGGATGATTCACCGGCCCGGAGGCGCAGCTCGCGCCGCCGCCGCCGCCGCGGCCCGGGCGCCCCCGGAGCCCGCCCGCCGCCGGGGACGCGGGCTCGGCGGGAAATCGCGCGGGCCGCGGGCGCGCCGGCTTTTCCTTCTCCAGCCTTATTGCTAACTCTCTAAAGGTCCCTACAAGTGGCTTTCGTGGAGCGATCACGTGGCCCCTGCCCCCTCGCGTTCTGGGTCCATTTATATTTATTATGCTAATATTTAGAAAGAGAAGGCCAAGTGGCGCGCCGAAGGAAACGCCTCAGGCAGTTACAACCCGCATAAGTTGAGCGTTTACCACACGCCAGGCGCTGCTCCACGATCCGTACAATCTCATTTAACCCCTGCAACAATTCCCCACTACGATCCTCTTTCTATAGGTAGGGAAACTGAGGCTCACAGCAGCTGCGTAGTTTACCTTAAGGTGGAACCAAAATTCAATTGCAGTGGTGTATTCTGGGGTCCGAGGTCTTAAACCCTACTCTGCTCCCTTATCAGGATTCAGGCTCAGGGAATGAATAAACCCGGGACAGCTAGGAGAAGGGAGGAGGTGCGCTCCTGTCGCCGGCTAGTAGGCCTGAAGATAAATCACTCTATTCAGCAAGATTTGGGTGGCAGATGCTATTTACCTTTGTTCTGTCTCTTTGAAGCAGCGCAGGGATTTTCCAGAGAAATCTTGACAGATGAATGTTTATCCTCCAGGTTTTTTGGTGATCAGAGGTCAAACTATTCTCAGCCTGTTTTTAATATAAACAATTCTCTGGGATAATTTTGACTGTGAAACGGCCACCTCTAACAGAAAGTCCATTTTAAACATTGTTTTGTTGTTTTTGTTTTGTTTTGACTGTGCTGAATAAAATGTTTCTTTTATTCTAAAATGTTTTCTCAGCTGAAATTTTCAAGTCTGTTTCTGTCCGTAAGTGATTTGACTTTCTATGTATTAGATGGTAATGAGGAAATTGCAGGTTTTCCAGTCTACATCTATTTTTAAAATTCTGAGCATAAAGAATATTTTATTATAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT122918&diff=890619NONHSAT1229182014-10-11T02:28:49Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
ST7OT <br />
<br />
===Characteristics===<br />
Four noncoding RNAs from the RAY1/ST7 gene locus. Complex gene locus with a large number of coding and noncoding isoforms. ST7OT1 & 2 are antisense to ST7. ST7OT3 & 4 are on the sense strand. ST7OT1 - ~2kb unspliced antisense transcript that initiates in intron 1 of ST7, covers the first exon and terminates in the ST7 promoter region. Polyadenylated. Nb: it also overlaps exon 1 of ST7OT4. ST7OT2 - Spliced antisense transcripts. Multiple isoforms that share either some 5' or some 3' exons. Isoforms are between 900-1300 bp, with 4-6 exons and polyadenlyated. ST7OT3 - Spliced ~1kb transcript. Begins in intron 10 of ST7, shares exons 11-13 and sometimes 14 & 15 with ST7 plus has a number of unique exons. Some exons may also act as a alternative 3' end for ST7. ST7OT4 - Multiple spliced transcripts within the long first intron of ST7. However, Refseq ST7OT4 transcript may be protein coding. Transcription begins just ~200bp downstream from the end of first ST7 exon.<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
ST7OT1 - abundantly expressed in testis, also expressed in cerebellum, skeletal muscle, uterus, cerebellum, spinal cord, fetal brain, and prostate. ST7OT2 - testis, fetal brain, cerebellum, mammary gland, fibroblasts. ST7OT3 - expression only detected in cerebellum. ST7OT4 - no expression detected.<br />
<br />
===Conservation===<br />
ST7OT1 - some conserved sequence with mouse, most of this is where ST7OT1 overlaps the first exon of ST7 however. ST7OT2 - 3' end of some isoforms shows some conservation with mouse. ST7OT3 - some conserved sequence, most of this is shared exons with ST7 though. ST7OT4 - sequence not conserved with mouse.<br />
<br />
===Misc===<br />
ST7OT1 - NCBI Gene ID: 93653. ST7OT2 - NCBI Gene ID: 93654. ST7OT3 - NCBI Gene ID: 93655. ST7OT4 - NCBI Gene ID: 338069<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT122918|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 416 nt|<br />
location = chr7+:116594674..116608628|<br />
number = 3|<br />
exons = 116594674..116594733,116595028..116595207,116608453..116608628|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr7:116594674..116608628&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CGAAACACAAAGTAAATTTCGAGCTAAGGGTTACAGTCCTTTAAATCTGGAAATTTCAAGTATCCCTCGGGATCGTGTCCCTGGGAGGCGGATAGGATTCAGCACTCTAGAATTGTCTCACCATTTGAATAGGTGCTGCTCAGCCCTTTTGAGTCTGTCATCGGAAAGACCATGGCTTTCTCGCTTTTCATCTTTTTGGATGGCTGCTTGTCGCAATATTGTCTTCTTCGCTTTAGACAAtgtcttactatgttgaccgtgctggactcgaattcctgggctcaagcaatccttctgcctcaaccttctgattatttcgactacgggtgtgcgccaccatgcctggcTTAGAAAAGGACTTTATGTTGAACCTCTTTTCTCTTACAATCAAATAATAAATTCATTGAGTCATACTA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT122926&diff=890618NONHSAT1229262014-10-11T02:27:34Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
ST7OT<br />
<br />
===Characteristics===<br />
Four noncoding RNAs from the RAY1/ST7 gene locus. Complex gene locus with a large number of coding and noncoding isoforms. ST7OT1 & 2 are antisense to ST7. ST7OT3 & 4 are on the sense strand. ST7OT1 - ~2kb unspliced antisense transcript that initiates in intron 1 of ST7, covers the first exon and terminates in the ST7 promoter region. Polyadenylated. Nb: it also overlaps exon 1 of ST7OT4. ST7OT2 - Spliced antisense transcripts. Multiple isoforms that share either some 5' or some 3' exons. Isoforms are between 900-1300 bp, with 4-6 exons and polyadenlyated. ST7OT3 - Spliced ~1kb transcript. Begins in intron 10 of ST7, shares exons 11-13 and sometimes 14 & 15 with ST7 plus has a number of unique exons. Some exons may also act as a alternative 3' end for ST7. ST7OT4 - Multiple spliced transcripts within the long first intron of ST7. However, Refseq ST7OT4 transcript may be protein coding. Transcription begins just ~200bp downstream from the end of first ST7 exon.<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
ST7OT1 - abundantly expressed in testis, also expressed in cerebellum, skeletal muscle, uterus, cerebellum, spinal cord, fetal brain, and prostate. ST7OT2 - testis, fetal brain, cerebellum, mammary gland, fibroblasts. ST7OT3 - expression only detected in cerebellum. ST7OT4 - no expression detected.<br />
<br />
===Conservation===<br />
ST7OT1 - some conserved sequence with mouse, most of this is where ST7OT1 overlaps the first exon of ST7 however. ST7OT2 - 3' end of some isoforms shows some conservation with mouse. ST7OT3 - some conserved sequence, most of this is shared exons with ST7 though. ST7OT4 - sequence not conserved with mouse.<br />
<br />
===Misc===<br />
ST7OT1 - NCBI Gene ID: 93653. ST7OT2 - NCBI Gene ID: 93654. ST7OT3 - NCBI Gene ID: 93655. ST7OT4 - NCBI Gene ID: 338069<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT122926|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = antisense|<br />
length = 940 nt|<br />
location = chr7-:116752346..116785614|<br />
number = 6|<br />
exons = 116752346..116752721,116757955..116758037,116768351..116768397,116770582..116770741,116784221..116784307,116785450..116785614|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr7:116752346..116785614&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GTGAAGACAGGCAGAGACTGGGGTAATGCAGCTACAAGGGAATGTCAGAGATTGCTAGCAAACACCAGAAGCTGGAAGAGGCAATTAAGGATTGCTCCCTAGAGCTTTTAGAGGGAGGACGGCTCTGCCACCTGCCTTGTTCTTGGACTCCTAGCCTCCAGAATTAGGTCACCTGTTGGGCAATATCACCATAGACTGAATACAGAAGCAGATATTAGCCTCCAGCCTCCTGCTCATCTGGACACTAGAGAGAGTGGATATTCTAAAAGCAGAAATCTTGACACTTAAGCCAAAAAGCCCTCCCATTCAGAAGGATGTATGGATTTTTCATACTTGCATCTGCGGGACGCAGATGGTCCGAGTCACAAGTAAAGAATGTCTGGTGGTCTTGGGCAGAGAGATTCATGTCATAAGGAATCACTAACACCTTGACTCCAGATCATGGCTTGAAACACACTGGAATGGGATTTTGCATAAAAGAAGAAAGCTCAGGAATGATAAATTTACACACCATGGATCTAGAAGGGAGTCTATAACCCCAGAATCACCATTATTTTGGGTGATCCATATGGCTATCAATTAAAGTGCTACCTGAGTGCTGTTCAACTTCTTGAGATGGATGAAAAAGGAATGAAAGGAGACATAGCAATCTTCAACTCCGCTCCTTTACTTTTGAATAAGAGGTGATGGAAGGCAAGGTCAGAGAGATCTGGGTTCAAATCTCATGATTTAACTGCTATATAACCTTGGCCAAATTATTTAAACTTTGTGTCTGTTTTTACTTAGCAATATAAAGACACTGGTCATACCCACCACTCAGAATTTCAATCAGAACTAAATGAAATAATATATGCAAAGTGCTTAATATAGTACACCTGGCATGGAGTGGTAACTCAATAAATAGATCTTTTGTTATAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Antisense]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT022111&diff=890617NONHSAT0221112014-10-11T02:26:27Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Neat1: Nuclear enriched abundant transcript 1. Short isoform - Neat1 v1. Long isoform - Neat1 v2. Multiple endocrine neoplasia 1 (MEN1). Short isoform - MEN epsilon. Long isoform - MEN beta. VINC: Virus-inducible ncRNA<br />
<br />
===Characteristics===<br />
Two isoforms: ~3.7 (NEAT1 v1/ MEN epsilon) and ~23 kb (NEAT1 v2/ MEN beta) transcribed from the MEN1 locus ([http://www.ncbi.nlm.nih.gov/pubmed/9253601 Guru (1997)], [http://www.ncbi.nlm.nih.gov/pubmed/16760401 Saha (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17270048 Hutchinson (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). Intergenic, single exon transcript. One transcriptional start site, long isoform is a continuation of the short isoform [http://www.ncbi.nlm.nih.gov/pubmed/17270048 (Hutchinson (2007))]. <br />
<br />
===Function===<br />
Transcription of Neat1 is essential for the assembly, maintenance and structural integrity of paraspeckles ([http://www.ncbi.nlm.nih.gov/pubmed/19217333 Clemson (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19188602 Sasaki (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/21170033 Mao (2011)]). Newly transcribed Neat1 RNA nucleates the formation of paraspeckles at its transcription site, recruiting paraspeckle proteins. Continued expression is required to maintain paraspeckles, identifying the dynamic nature of this nuclear body [http://www.ncbi.nlm.nih.gov/pubmed/21170033 (Mao (2011))]. Literature currently provides conflicting evidence about whether Neat1 v1 is sufficient for the formation of paraspeckles, or if this requires full length Neat1 v2 ([http://www.ncbi.nlm.nih.gov/pubmed/19188602 Sasaki (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/21240286 Shevtsov (2011)]). In vivo however, significant expression of Neat1 v2 appears to be required for cells to form more than 1 or 2 paraspeckles [http://www.ncbi.nlm.nih.gov/pubmed/21444682 (Nakagawa (2011))]. Neat1 appears to constrain the size and mediate the cylindrical geometry of paraspeckles. Neat1 short and the identical 5' end of Neat1 long plus the 3' of Neat1 long all localise to the periphery of paraspeckles, while the central region of Neat1 long is found in the interior of the nuclear body [http://www.ncbi.nlm.nih.gov/pubmed/20881053 (Souquere (2010))]. Interacts with paraspeckles proteins PSPC1, PSF/SFPQ and NONO/P54NRB either directly or in a complex ([http://www.ncbi.nlm.nih.gov/pubmed/19217333 Clemson (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19188602 Sasaki (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). Interaction of short isoform with p54 requires protein interaction regions near the 5' and 3' of the transcript [http://www.ncbi.nlm.nih.gov/pubmed/20211624 (Murthy (2010))]. Neat1 knockout lead to loss of paraspeckles, however mice were viable and fertile with normal morphology and populations of differentiated cells in one Neat1 v1 and v2 expressing tissue tested [http://www.ncbi.nlm.nih.gov/pubmed/21444682 (Nakagawa (2011))]. Neat1 has also been reported to interact with a number of chromatin binding protein/complexes in mouse embryonic stem cells including PRC1, PRC2, JARID1B, ESET and SUV39H1, with the general pattern being interaction with repressors of gene expression [http://www.ncbi.nlm.nih.gov/pubmed/21874018 (Guttman (2011))].<br />
<br />
===Expression===<br />
Expressed in a wide range of human and mouse tissues ([http://www.ncbi.nlm.nih.gov/pubmed/9858482 Peyman (1999)], [http://www.ncbi.nlm.nih.gov/pubmed/16760401 Saha (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17270048 Hutchinson (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). Although expression of the long isoform (Neat1 v2/ Men beta) is much lower than Neat1 v1/ Men epsilon in many tissues [http://www.ncbi.nlm.nih.gov/pubmed/21444682 (Nakagawa (2011))]. Up-regulation of Neat1 (and subsequent formation of/increase in paraspeckles) may be a general feature of differentiation. Neat1 is up-regulated upon human ESC differentiation [http://www.ncbi.nlm.nih.gov/pubmed/19716791 (Chen (2009))], muscle differentiation [http://www.ncbi.nlm.nih.gov/pubmed/19106332 (Sunwoo (2009))] and in-vitro neuronal differentiation [http://www.ncbi.nlm.nih.gov/pubmed/20137068 (Mercer (2010))]. Up-regulated upon infection of mice with Japanese encephalitis virus or Rabies virus [http://www.ncbi.nlm.nih.gov/pubmed/16760401 (Saha (2006))]. Expressed in the nucleus accumbens of normal human brains and upregulated in this brain region in heroin abusers [http://www.ncbi.nlm.nih.gov/pubmed/21128942 (Michelhaugh (2010))]. In addition, expression levels are elevated in the caudate nucleus of patients suffering from the neurodegenerative condition, Huntington's disease [http://www.ncbi.nlm.nih.gov/pubmed/22202438 (Johnson (2012))]. Localised to paraspeckles within the nucleus ([http://www.ncbi.nlm.nih.gov/pubmed/17270048 Hutchinson (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). Mouse Neat1 found to be highly unstable (half-life <2 hr) in N2A (neuroblastoma) and 3T3 cells, although low stability did not prevent paraspeckle formation ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/22406755 Clark (2012)]), while human NEAT1 appears to be more stable ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19188602 Sasaki (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). The two Neat1 isoforms also have differing stability, with the long (v2/Men beta) isoform more stable than than the shorter (v1/Men epsilon) isoform in N2A and 3T3 cells [http://www.ncbi.nlm.nih.gov/pubmed/22406755 (Clark (2012))].<br />
<br />
===Conservation===<br />
Placental mammals. Dog Neat1 is found in several genomic locations, version that is found near single dog Malat1 gene is given below [http://www.ncbi.nlm.nih.gov/pubmed/17270048 (Hutchinson (2007))]. <br />
<br />
===Misc===<br />
A conserved tRNA like sequence at the 3' end is cleaved off and processed to generate a short tRNA-like ncRNA from the long (Men beta) transcript, similar to Malat1 [http://www.ncbi.nlm.nih.gov/pubmed/19106332 (Sunwoo (2009))]. The last ~500bp of the short (Men epsilon) isoform has been shown to be expressed in trophoblast cells with a function potentially independent from the Neat1 transcript. This transcript, TncRNA has its own entry.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT022111|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 3756 nt|<br />
location = chr11+:65190269..65194003|<br />
number = 1|<br />
exons = 65190269..65194003|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr11:65190269..65194003&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GGAGTTAGCGACAGGGAGGGATGCGCGCCTGGGTGTAGTTGTGGGGGAGGAAGTGGCTAGCTCAGGGCTTCAGGGGACAGACAGGGAGAGATGACTGAGTTAGATGAGACGAGGGGGCGGGCTGGGGGTGCGAGAAGGAAGCTTGGCAAGGAGACTAGGTCTAGGGGGACCACAGTGGGGCAGGCTGCATGGAAAATATCCGCAGGGTCCCCCAGGCAGAACAGCCACGCTCCAGGCCAGGCTGTCCCTACTGCCTGGTGGAGGGGGAACTTGACCTCTGGGAGGGCGCCGCTCTTGCATAGCTGAGCGAGCCCGGGTGCGCTGGTCTGTGTGGAAGGAGGAAGGCAGGGAGAGGTAGAAGGGGTGGAGGAGTCAGGAGGAATAGGCCGCAGCAGCCCTGGAAATGATCAGGAAGGCAGGCAGTGGGTGCAGGGCTGCAGGAGGGCCGGGAGGGCTAATCTTCAACTTGTCCATGCCAGCAGCCCCTTTTTTTCCAGACCAAGGGCTGTGAACCCGCCTGGGGATGAGGCCTGGTCTTGTGGAACTGAACTTAGCTCGACGGGGCTGACCGCTCTGGCCCAGGGTGGTATGTAATTTTCGCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCAGGTCTGGGTGCGAAGCCAGGCCCCTGGGCGGAGGTGAGGGGTGGTCTGAGGAGTGATGTGGAGTTAAGGCGCCATCCTCACCGGTGACTGGTGCGGCACCTAGCATGTTTGACAGGCGGGGACTGCGAGGCACGCTGCTCGGGTGTTGGGGACAACATTGACCAACGCTTTATTTTCCAGGTGGCAGTGCTCCTTTTGGACTTTTCTCTAGGTTTGGCGCTAAACTCTTCTTGTGAGCTCACTCCACCCCTTCTTCCTCCCTTTAACTTATCCATTCACTTAAAACATTACCTGGTCATCTGGTAAGCCCGGGACAGTAAGCCGAGTGGCTGTTGGAGTCGGTATTGTTGGTAATGGTGGAGGAAGAGAGGCCTTCCCGCTGAGGCTGGGGTGGGGCGGATCGGTGTTGCTTGCCTGCAGAGAGGGTGGGGAGTGAATGTGCACCCTTGGGTGGGCCTGCAGCCATCCAGCTGAAAGTTACAAAAATGCTTCATGGACCGTGGTTTGTTACTATAGTGTTCCTCATGGCGAGCAGATGGAACCGGGAGACATGGAGTCCCTGGCCAGTGTGAGTCCTAGCATTGCAGGAGGGGAGACCCTGGAGGAGAGAGCCCGCCTCAATTGATGCCTGCAGATTGAATTTCCAGAGGCTTAGGAGGAGGAAGTTCTCCAATGTTCTGTTTCCAGGCCTTGCTCAGGAAGCCCTGTATTCAGGAGGCTACCATTTAAAGTTTGCAGATGAGCTTATGGGGGGCAATCTTAAAAAGTCCACAGCAGATGCATCCGGCTCGAGGGGCCATCAGCTTTGAATAAATGCTTGTTCCAGAGCCCATGAATGCCAGCAGGCACCCCTCCTTTCCTGGGGTAAAGGTTTTCAGATGCTGCATCTTCTAAATTGAGCCTCCGGTCATACTAGTTTTGTGCTTGGAACCTTGCTTCAAGAAGATCCCTAAGCTGTAGAACATTTTAACGTTGATGCCACAACGCAGATTGATGCCTTGTAGATGGAGCTTGCAGATGGAGCCCCGTGACCTCTCACCTACCCACCTGTTTGCCTGCCTTCTTGTGCGTTTCTCGGAGAAGTTCTTAGCCTGATGAAATAACTTGGGGCGTTGAAGAGCTGTTTAATTTTAAATGCCTTAGACTGGGGATATATTAGAGGAAGCAGATTGTCAAATTAAGGGTGTCATTGTGTTGTGCTAAACGCTGGGAGGGTACAAGTTGGTCATTCCTAAATCTGTGTGTGAGAAATGGCAGGTCTAGTTTGGGCATTGTGATTGCATTGCAGATTACTAGGAGAAGGGAATGGTGGGTACACCGGTAGTGCTCTTTTGTTCTTGCTTCGTTTTTTTAAACTTGAACTTTACTTCGTTAGATTTCATAATACTTTCTTGGCATTCTAGTAAGAGGACCCTGAGGTGGGAGTTGTGGGGGACGGGGAGAAGGGGACAGCTTGGCACCGGTCCCGTGGGCGTTGCAGTGTGGGGGATGGGGGTATGCAGCTTGGCACTGGTACTGGGAGGGATGAGGGTGAAGAAGGGGAGAGGGTTGGTTAGAGATACAGTGTGGGTGGTGGGGGTGGTAGGAAATGCAGGTTGAAGGGAATTCTCTGGGGCTTTGGGGAATTTAGTGCGTGGGTGAGCCAAGAAAATACTAATTAATAATAGTAAGTTGTTAGTGTTGGTTAAGTTGTTGCTTGGAAGTGAGAAGTTGCTTAGAAACTTTCCAAAGTGCTTAGAACTTTAAGTGCAAACAGACAAACTAACAAACAAAAATTGTTTTGCTTTGCTACAAGGTGGGGAAGACTGAAGAAGTGTTAACTGAAAACAGGTGACACAGAGTCACCAGTTTTCCGAGAACCAAAGGGAGGGGTGTGTGATGCCATCTCACAGGCAGGGGAAATGTCTTTACCAGCTTCCTCCTGGTGGCCAAGACAGCCTGTTTCAGAGGGTTGTTTTGTTTGGGGTGTGGGTGTTATCAAGTGAATTAGTCACTTGAAAGATGGGCGTCAGACTTGCATACGCAGCAGATCAGCATCCTTCGCTGCCCCTTAGCAACTTAGGTGGTTGATTTGAAACTGTGAAGGTGTGATTTTTTCAGGAGCTGGAAGTCTTAGAAAAGCCTTGTAAATGCCTATATTGTGGGCTTTTAACGTATTTAAGGGACCACTTAAGACGAGATTAGATGGGCTCTTCTGGATTTGTTCCTCATTTGTCACAGGTGTCTTGTGATTGAAAATCATGAGCGAAGTGAAATTGCATTGAATTTCAAGGGAATTTAGTATGTAAATCGTGCCTTAGAAACACATCTGTTGTCTTTTCTGTGTTTGGTCGATATTAATAATGGCAAAATTTTTGCCTATCTAGTATCTTCAAATTGTAGTCTTTGTAACAACCAAATAACCTTTTGTGGTCACTGTAAAATTAATATTTGGTAGACAGAATCCATGTACCTTTGCTAAGGTTAGAATGAATAATTTATTGTATTTTTAATTTGAATGTTTGTGCTTTTTAAATGAGCCAAGACTAGAGGGGAAACTATCACCTAAAATCAGTTTGGAAAACAAGACCTAAAAAGGGAAGGGGATGGGGATTGTGGGGAGAGAGTGGGCGAGGTGCCTTTACTACATGTGTGATCTGAAAACCCTGCTTGGTTCTGAGCTGCGTCTATTGAATTGGTAAAGTAATACCAATGGCTTTTTATCATTTCCTTCTTCCCTTTAAGTTTCACTTGAAATTTTAAAAATCATGGTTATTTTTATCGTTGGGATCTTTCTGTCTTCTGGGTTCCATTTTTTAAATGTTTAAAAATATGTTGACATGGTAGTTCAGTTCTTAACCAATGACTTGGGGATGATGCAAACAATTACTGTCGTTGGGATTTAGAGTGTATTAGTCACGCATGTATGGGGAAGTAGTCTCGGGTATGCTGTTGTGAAATTGAAACTGTAAAAGTAGATGGTTGAAAGTACTGGTATGTTGCTCTGTATGGTAAGAACTAATTCTGTTACGTCATGTACATAATTACTAATCACTTTTCTTCCCCTTTACAGCACAAATAAAGTTTGAGTTCTAAACTCATTAGAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000501122.2&diff=890616ENST00000501122.22014-10-11T02:24:34Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Neat1: Nuclear enriched abundant transcript 1. Short isoform - Neat1 v1. Long isoform - Neat1 v2. Multiple endocrine neoplasia 1 (MEN1). Short isoform - MEN epsilon. Long isoform - MEN beta. VINC: Virus-inducible ncRNA<br />
<br />
===Characteristics===<br />
Two isoforms: ~3.7 (NEAT1 v1/ MEN epsilon) and ~23 kb (NEAT1 v2/ MEN beta) transcribed from the MEN1 locus ([http://www.ncbi.nlm.nih.gov/pubmed/9253601 Guru (1997)], [http://www.ncbi.nlm.nih.gov/pubmed/16760401 Saha (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17270048 Hutchinson (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). Intergenic, single exon transcript. One transcriptional start site, long isoform is a continuation of the short isoform [http://www.ncbi.nlm.nih.gov/pubmed/17270048 (Hutchinson (2007))].<br />
<br />
===Function===<br />
Transcription of Neat1 is essential for the assembly, maintenance and structural integrity of paraspeckles ([http://www.ncbi.nlm.nih.gov/pubmed/19217333 Clemson (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19188602 Sasaki (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/21170033 Mao (2011)]). Newly transcribed Neat1 RNA nucleates the formation of paraspeckles at its transcription site, recruiting paraspeckle proteins. Continued expression is required to maintain paraspeckles, identifying the dynamic nature of this nuclear body [http://www.ncbi.nlm.nih.gov/pubmed/21170033 (Mao (2011))]. Literature currently provides conflicting evidence about whether Neat1 v1 is sufficient for the formation of paraspeckles, or if this requires full length Neat1 v2 ([http://www.ncbi.nlm.nih.gov/pubmed/19188602 Sasaki (2009)], ([http://www.ncbi.nlm.nih.gov/pubmed/21240286 Shevtsov (2011)]). In vivo however, significant expression of Neat1 v2 appears to be required for cells to form more than 1 or 2 paraspeckles [http://www.ncbi.nlm.nih.gov/pubmed/21444682 (Nakagawa (2011))]. Neat1 appears to constrain the size and mediate the cylindrical geometry of paraspeckles. Neat1 short and the identical 5' end of Neat1 long plus the 3' of Neat1 long all localise to the periphery of paraspeckles, while the central region of Neat1 long is found in the interior of the nuclear body [http://www.ncbi.nlm.nih.gov/pubmed/20881053 (Souquere (2010))]. Interacts with paraspeckles proteins PSPC1, PSF/SFPQ and NONO/P54NRB either directly or in a complex ([http://www.ncbi.nlm.nih.gov/pubmed/19217333 Clemson (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19188602 Sasaki (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). Interaction of short isoform with p54 requires protein interaction regions near the 5' and 3' of the transcript [http://www.ncbi.nlm.nih.gov/pubmed/20211624 (Murthy (2010))]. Neat1 knockout lead to loss of paraspeckles, however mice were viable and fertile with normal morphology and populations of differentiated cells in one Neat1 v1 and v2 expressing tissue tested [http://www.ncbi.nlm.nih.gov/pubmed/21444682 (Nakagawa (2011))]. Neat1 has also been reported to interact with a number of chromatin binding protein/complexes in mouse embryonic stem cells including PRC1, PRC2, JARID1B, ESET and SUV39H1, with the general pattern being interaction with repressors of gene expression [http://www.ncbi.nlm.nih.gov/pubmed/21874018 (Guttman (2011))].<br />
<br />
===Expression===<br />
Expressed in a wide range of human and mouse tissues ([http://www.ncbi.nlm.nih.gov/pubmed/9858482 Peyman (1999)], [http://www.ncbi.nlm.nih.gov/pubmed/16760401 Saha (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17270048 Hutchinson (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). Although expression of the long isoform (Neat1 v2/ Men beta) is much lower than Neat1 v1/ Men epsilon in many tissues [http://www.ncbi.nlm.nih.gov/pubmed/21444682 (Nakagawa (2011))]. Up-regulation of Neat1 (and subsequent formation of/increase in paraspeckles) may be a general feature of differentiation. Neat1 is up-regulated upon human ESC differentiation [http://www.ncbi.nlm.nih.gov/pubmed/19716791 (Chen (2009))], muscle differentiation [http://www.ncbi.nlm.nih.gov/pubmed/19106332 (Sunwoo (2009))] and in-vitro neuronal differentiation [http://www.ncbi.nlm.nih.gov/pubmed/20137068 (Mercer (2010))]. Up-regulated upon infection of mice with Japanese encephalitis virus or Rabies virus [http://www.ncbi.nlm.nih.gov/pubmed/16760401 (Saha (2006))]. Expressed in the nucleus accumbens of normal human brains and upregulated in this brain region in heroin abusers [http://www.ncbi.nlm.nih.gov/pubmed/21128942 (Michelhaugh (2010))]. In addition, expression levels are elevated in the caudate nucleus of patients suffering from the neurodegenerative condition, Huntington's disease [http://www.ncbi.nlm.nih.gov/pubmed/22202438 (Johnson (2012))]. Localised to paraspeckles within the nucleus ([http://www.ncbi.nlm.nih.gov/pubmed/17270048 Hutchinson (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). Mouse Neat1 found to be highly unstable (half-life <2 hr) in N2A (neuroblastoma) and 3T3 cells, although low stability did not prevent paraspeckle formation ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/22406755 Clark (2012)]), while human NEAT1 appears to be more stable ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19188602 Sasaki (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19106332 Sunwoo (2009)]). The two Neat1 isoforms also have differing stability, with the long (v2/Men beta) isoform more stable than than the shorter (v1/Men epsilon) isoform in N2A and 3T3 cells [http://www.ncbi.nlm.nih.gov/pubmed/22406755 (Clark (2012))].<br />
<br />
===Conservation===<br />
Placental mammals. Dog Neat1 is found in several genomic locations, version that is found near single dog Malat1 gene is given below [http://www.ncbi.nlm.nih.gov/pubmed/17270048 (Hutchinson (2007))]. <br />
<br />
===Misc===<br />
A conserved tRNA like sequence at the 3' end is cleaved off and processed to generate a short tRNA-like ncRNA from the long (Men beta) transcript, similar to Malat1 [http://www.ncbi.nlm.nih.gov/pubmed/19106332 (Sunwoo (2009))]. The last ~500bp of the short (Men epsilon) isoform has been shown to be expressed in trophoblast cells with a function potentially independent from the Neat1 transcript. This transcript, TncRNA has its own entry.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000501122.2|<br />
source = Gencode19|<br />
same = lnc-AP000769.1-2:3,NONHSAT022112|<br />
classification = intergenic|<br />
length = 22743 nt|<br />
location = chr11+:65190269..65213011|<br />
number = 1|<br />
exons = 65190269..65213011|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr11:65190269..65213011&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GGAGTTAGCGACAGGGAGGGATGCGCGCCTGGGTGTAGTTGTGGGGGAGGAAGTGGCTAGCTCAGGGCTTCAGGGGACAGACAGGGAGAGATGACTGAGTTAGATGAGACGAGGGGGCGGGCTGGGGGTGCGAGAAGGAAGCTTGGCAAGGAGACTAGGTCTAGGGGGACCACAGTGGGGCAGGCTGCATGGAAAATATCCGCAGGGTCCCCCAGGCAGAACAGCCACGCTCCAGGCCAGGCTGTCCCTACTGCCTGGTGGAGGGGGAACTTGACCTCTGGGAGGGCGCCGCTCTTGCATAGCTGAGCGAGCCCGGGTGCGCTGGTCTGTGTGGAAGGAGGAAGGCAGGGAGAGGTAGAAGGGGTGGAGGAGTCAGGAGGAATAGGCCGCAGCAGCCCTGGAAATGATCAGGAAGGCAGGCAGTGGGTGCAGGGCTGCAGGAGGGCCGGGAGGGCTAATCTTCAACTTGTCCATGCCAGCAGCCCCTTTTTTTCCAGACCAAGGGCTGTGAACCCGCCTGGGGATGAGGCCTGGTCTTGTGGAACTGAACTTAGCTCGACGGGGCTGACCGCTCTGGCCCAGGGTGGTATGTAATTTTCGCTCGGCCTGGGACGGGGCCCAGGCCGGGCCCAGCCTGGTGGAGCGTCCAGGTCTGGGTGCGAAGCCAGGCCCCTGGGCGGAGGTGAGGGGTGGTCTGAGGAGTGATGTGGAGTTAAGGCGCCATCCTCACCGGTGACTGGTGCGGCACCTAGCATGTTTGACAGGCGGGGACTGCGAGGCACGCTGCTCGGGTGTTGGGGACAACATTGACCAACGCTTTATTTTCCAGGTGGCAGTGCTCCTTTTGGACTTTTCTCTAGGTTTGGCGCTAAACTCTTCTTGTGAGCTCACTCCACCCCTTCTTCCTCCCTTTAACTTATCCATTCACTTAAAACATTACCTGGTCATCTGGTAAGCCCGGGACAGTAAGCCGAGTGGCTGTTGGAGTCGGTATTGTTGGTAATGGTGGAGGAAGAGAGGCCTTCCCGCTGAGGCTGGGGTGGGGCGGATCGGTGTTGCTTGCCTGCAGAGAGGGTGGGGAGTGAATGTGCACCCTTGGGTGGGCCTGCAGCCATCCAGCTGAAAGTTACAAAAATGCTTCATGGACCGTGGTTTGTTACTATAGTGTTCCTCATGGCGAGCAGATGGAACCGGGAGACATGGAGTCCCTGGCCAGTGTGAGTCCTAGCATTGCAGGAGGGGAGACCCTGGAGGAGAGAGCCCGCCTCAATTGATGCCTGCAGATTGAATTTCCAGAGGCTTAGGAGGAGGAAGTTCTCCAATGTTCTGTTTCCAGGCCTTGCTCAGGAAGCCCTGTATTCAGGAGGCTACCATTTAAAGTTTGCAGATGAGCTTATGGGGGGCAATCTTAAAAAGTCCACAGCAGATGCATCCGGCTCGAGGGGCCATCAGCTTTGAATAAATGCTTGTTCCAGAGCCCATGAATGCCAGCAGGCACCCCTCCTTTCCTGGGGTAAAGGTTTTCAGATGCTGCATCTTCTAAATTGAGCCTCCGGTCATACTAGTTTTGTGCTTGGAACCTTGCTTCAAGAAGATCCCTAAGCTGTAGAACATTTTAACGTTGATGCCACAACGCAGATTGATGCCTTGTAGATGGAGCTTGCAGATGGAGCCCCGTGACCTCTCACCTACCCACCTGTTTGCCTGCCTTCTTGTGCGTTTCTCGGAGAAGTTCTTAGCCTGATGAAATAACTTGGGGCGTTGAAGAGCTGTTTAATTTTAAATGCCTTAGACTGGGGATATATTAGAGGAAGCAGATTGTCAAATTAAGGGTGTCATTGTGTTGTGCTAAACGCTGGGAGGGTACAAGTTGGTCATTCCTAAATCTGTGTGTGAGAAATGGCAGGTCTAGTTTGGGCATTGTGATTGCATTGCAGATTACTAGGAGAAGGGAATGGTGGGTACACCGGTAGTGCTCTTTTGTTCTTGCTTCGTTTTTTTAAACTTGAACTTTACTTCGTTAGATTTCATAATACTTTCTTGGCATTCTAGTAAGAGGACCCTGAGGTGGGAGTTGTGGGGGACGGGGAGAAGGGGACAGCTTGGCACCGGTCCCGTGGGCGTTGCAGTGTGGGGGATGGGGGTATGCAGCTTGGCACTGGTACTGGGAGGGATGAGGGTGAAGAAGGGGAGAGGGTTGGTTAGAGATACAGTGTGGGTGGTGGGGGTGGTAGGAAATGCAGGTTGAAGGGAATTCTCTGGGGCTTTGGGGAATTTAGTGCGTGGGTGAGCCAAGAAAATACTAATTAATAATAGTAAGTTGTTAGTGTTGGTTAAGTTGTTGCTTGGAAGTGAGAAGTTGCTTAGAAACTTTCCAAAGTGCTTAGAACTTTAAGTGCAAACAGACAAACTAACAAACAAAAATTGTTTTGCTTTGCTACAAGGTGGGGAAGACTGAAGAAGTGTTAACTGAAAACAGGTGACACAGAGTCACCAGTTTTCCGAGAACCAAAGGGAGGGGTGTGTGATGCCATCTCACAGGCAGGGGAAATGTCTTTACCAGCTTCCTCCTGGTGGCCAAGACAGCCTGTTTCAGAGGGTTGTTTTGTTTGGGGTGTGGGTGTTATCAAGTGAATTAGTCACTTGAAAGATGGGCGTCAGACTTGCATACGCAGCAGATCAGCATCCTTCGCTGCCCCTTAGCAACTTAGGTGGTTGATTTGAAACTGTGAAGGTGTGATTTTTTCAGGAGCTGGAAGTCTTAGAAAAGCCTTGTAAATGCCTATATTGTGGGCTTTTAACGTATTTAAGGGACCACTTAAGACGAGATTAGATGGGCTCTTCTGGATTTGTTCCTCATTTGTCACAGGTGTCTTGTGATTGAAAATCATGAGCGAAGTGAAATTGCATTGAATTTCAAGGGAATTTAGTATGTAAATCGTGCCTTAGAAACACATCTGTTGTCTTTTCTGTGTTTGGTCGATATTAATAATGGCAAAATTTTTGCCTATCTAGTATCTTCAAATTGTAGTCTTTGTAACAACCAAATAACCTTTTGTGGTCACTGTAAAATTAATATTTGGTAGACAGAATCCATGTACCTTTGCTAAGGTTAGAATGAATAATTTATTGTATTTTTAATTTGAATGTTTGTGCTTTTTAAATGAGCCAAGACTAGAGGGGAAACTATCACCTAAAATCAGTTTGGAAAACAAGACCTAAAAAGGGAAGGGGATGGGGATTGTGGGGAGAGAGTGGGCGAGGTGCCTTTACTACATGTGTGATCTGAAAACCCTGCTTGGTTCTGAGCTGCGTCTATTGAATTGGTAAAGTAATACCAATGGCTTTTTATCATTTCCTTCTTCCCTTTAAGTTTCACTTGAAATTTTAAAAATCATGGTTATTTTTATCGTTGGGATCTTTCTGTCTTCTGGGTTCCATTTTTTAAATGTTTAAAAATATGTTGACATGGTAGTTCAGTTCTTAACCAATGACTTGGGGATGATGCAAACAATTACTGTCGTTGGGATTTAGAGTGTATTAGTCACGCATGTATGGGGAAGTAGTCTCGGGTATGCTGTTGTGAAATTGAAACTGTAAAAGTAGATGGTTGAAAGTACTGGTATGTTGCTCTGTATGGTAAGAACTAATTCTGTTACGTCATGTACATAATTACTAATCACTTTTCTTCCCCTTTACAGCACAAATAAAGTTTGAGTTCTAAACTCATTAGAATTGTTGTATTGCTATGTTACATTTCTCGACCCCTATCACATTGCCTTCATAACGACTTTGGATGTATCTTCATATTGTAGATTTAGGTCTAGATTTGCTAGCTCCAAGTAATTAAGGCCATGTAGGAGAGCATGGTAACCACAGATAGAACTGGTATTATCCCAAGTGGTCTGCAGACTGCTGAGTGGGGATGGGATCTGCTCTCTGTTGAGAGTTGGTAATCATTGGTTTGAAATGTGATGAAACCACTCAAGCCAATGAAGGTGGGTGTGTAGGTGGGGAGTACTTTGCCATAATATTTTAAAACATTACCTGGTTAGAGTTCTAAGTGGTACTTATTTTTGTTTGGTTAGGGGAAAGCCTGAATAAAAACAGAAATGGACACATAATATGCATATTCCATAGTCTTTGGGAGGCTGGAATGTGCCTGGGATTTGGGTCTAAGTGTATGCGTAATTCTTACCTCACTAAAGAATTTGCCTTGTTTTTTTCCTTTTGGTGAGTGACTAAAACGTCTGGGCTTCCCTGTGTGCGTGCTACAGTAAGCAAGCAGAGGCTGTGCAAAGGTGTGAGCAGGATCACGTGGAATCTGGAGGATACATCTTGGCTTGCAAACTGCCTCTGTCTCCTGGGTGGGACTGTTCTGTCCTTGCACTGCTGTTCTGTGTTACCTCTTGGGGTGTAAGGTTTTGCTTACAGGAGACAAACTTTGGGCGTAGAATGGAAGCCACTGCCAGCCTCTGTGCTGAGAAGGAAGGTGCTTGTTTCAAAGGGAGCAGCAAGGGAGGCTTGTTCTACTCACCTGGGCCTGTTTGCCTGAGAAGGGGAGATAAGGGCTGAACTGGGACTAGCCAGGGGGACCAACACAAATGGTGGGGGATCATGACCTGAAGGATTCTTTCCTTCCCATGAGCTGCAGGGCTGGTTGCCGTCCTTGCAACTGTGTCTTATTTGCCTGTGCCGTTATATCTTGGTGACCCCTCCACGTGTACACTACTGACAAACGGGTGGAGTGCTGGGGAGAAGTCACTGTGCCGCCCACCTAGTAAACCTTCTGTCTGTGCTCATGGCATCTCCAAGATGGGGCACTGCTGTGTGCAGAATCCAGGGTCCTCTTTCTGCTTGCAACTCCTTTCCCTGGATGCCCCAGAAACAATCCAGGCCTCCTTTCCTATCTTACCCCTTTGCTTTGCTTTTTACCCCAGCACCTCTATAACCGCCTTCTCTTCTTTTCAGAACTCCTTGTTTCTCGTCCTGTTTTTTATGATTACAAAACTCTTGCTTCCACCCTGGAAGATAACTGCTATAGATGCCTGTATGTAAATGGTGCTGTCTCCAGCAACTGGCATGCTGAAGAAGAATTGATTCACGGGGTATAAATGTTGGGGATTGGAAGTGGGGATGAAATGGCACTTGTTGATACAGGAGCAGAGAGGTGAGGCCGACTGCTGAAGACAGCTCGCCACCCTCCTTGCCTCCACTCCAATCCAGGGGCTGGGGCCACATTCTTTGCCTTCATTTATCCTCAGATCAGGTGAGATCGACAGGAGGTGTTGATGGCAGTGCCAGCAATTATTGCTAATCCGTTTGCATCCTTATGCATAGATCTGAATTCAGACTTTGTGAATTTCCAGAGGTGTGGGTAATATAATAGAATTCAGTGAGTGGGCATGGCTGATCTTGTGCAAATTAAAAGTTATGGGGCATAAGAATAGCAAAAGTTGAACTTCTTTTAAAAAGGAAAGTACCCTGAGAGCCAGTATTGGTTGAGGCTCTTCAGTATGCCCAGGTTGGCAGCACTGAGAACCGCAGGAACGGCCTGTTGTTACAAAAAGGAGATTGACTCAGCTGCCCTTGGTGCATCTGACTGACTATGACTGCTGAGAGATTCCAAGGACCCTTAATGCCAGGGCTAACCTCTCCATGTGCAGTGAGACCTCTGGAGGAAGTGTCATCCTCTGGCTTTGTGTGGTACTCATTATGGTGCAGTGCGGGCATGAAATGAAGACACCCAAATAGGCTTACAGATACGATATGTTTTAAATGTTCGTATTTAACAAAAACATACTGACACTGTTTGGAAATGGCAACAGGAAGATAGCAAAATGAATACTAACATTACGAAAAGATGAACAGGTACATGTTCCAAGGCAGGTGGCTGTGAACTTCCTCTGAGTGAAGGCATCCCCTCCAGCACCTTTCAGCCTGCTAGTTAGGACGACCCGCCGCCACCCTCCAGGACCTCCAGCCCTGCACTGCCTTTCCTCTCTTTTAAATAATTCTTCATTGAGTTCTAATATGTAAAAAAAAAAAGTTTACTGTAAAGTTTGCAAATAAGGAAATTTTTTTTAAAAGTCCTCAGTAATCTTACCAGTAACAATTGTTATGGGCACATTTGCTTTTGGAAGATTTCTTTTGTATGCATGGGATAAGTACATTTTTAAACAAAAATGGGATTATGCCATAAATTCTATTTTGTGACTTTAATATATAGTGAACACCTTTTTTAATGATGACAGGATGTTCCCTTGCATGGCTGTATCAATTTAAACAATCTTGTTTCAATGGGCATACAGGGTATTTTCTAGTTTTTTTTTCCTCTTAGAAAATAATACTTGCGATGACTTTCCTTGTAGCTCAGACTTTTTCACGTCTGTTGTTATCTCTTTGGGAATGCTGAATACATACATTTCGAGAAGGAAATGACTGTTAAACTCTTAAGACTTCAGGTTCATATTGCTAAACTGCCCAGCAGGGAGGGATTTTTTCAATTAGTGTTCTCACTGGTGAGGCAAACCTGATGCCTTCCCCTCTTCCTCAGAACCGGCTTTATCACATTGAAAACCTTTGCTCCTCCGACGGATCGAGTCTGCTTTCCCTCTGGATGTGAGCATTGCTTTGTCTGCTGGTGACTGAACATCTCTACCTTGTGTCAATTGGCCATTTGTGGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTATGATTTTCTAATTCCTAGTCATTTTTCTATTGATTGTTTTGCAAAAGCCATTTACATCTTAAGGATATTGATAATCTTTTGTTATATTTGATGCAAATATTTTTTTCCAGTTTATAGGTTGCCTTTTAATTTTGTGTTTCAGGTAGATAAAAGTTAAACGATTTTCTTAGGTTAGTTTATCACTGTGGTTTCTGAACTTGTTATGTGTAGATCTTTTCCACCCCAAGAGTACATAAATATTAATCCATACTTTCTTATGGAACTTGTATGGTTTCGTTTTTTACATTTAAACCTTCTTCCCCGTGGTGTGTGTTGTGGAATCTGTGTTTGTGTGAGGAGGGGCATGGTGCTCTCAGAACCCACCTCCTGTGGCCAGAGAGCCCTGTCCTGTGAGGGTGGTTGTCACAGTGGCAGGGTTCAATTCAGAAGACCTTGAGGGCAGGCTGATGTTTCCTGAATGGGCCCCTGGTTGTTGCTTGTCCCTGACTCTCCATTTCCCCATCTGAGTGGATTTGGACCTAATAGGGCACTGGAGCTGGTTCGAATCCTGACTGGACTACTTGGCAACTTTATGTCTGGGAGCAAGTTACTTAACCTCCCCAAGCCTGTGTCTGTGAAATGCGGGTAAATGAATGTAGATGTTTGGCAGCAGCTACTCCTTGTTGAGCTCTCACAGTGAACTCTCCTGCCTCTGCCCTCCTTCCCCGCCTCCCCTGGTGCCTAGCGTCAGGTCTAGCCACTTCCTCCTGGGCCCCTCTCCCTTTTCTGTGGCTGGCTGCCTGCCCGCCTGGCGCTGGACCTTTCATGTAACGGGAATCAGCATGTATATTCTGGTCTGGTCTGTTTCTACACTTAATTTTGTTTCCAGTAGTATTTCCCTGTACCGGCAGAGTTCACAAACACATTTGAAGAGGCTTTTTCTCAGGATTCTTAACCTTCCCAAAGGAAGTCCCATGGATGGGTTTCTAGAAGTCTATAAATGCTCTGAAATTGTATTTTTCTGTGGAAAGCATAACTTTCATCTGCTTGTTCGTGCTCAAAAAAGATCATGAATGAATGATTGCATGATTTTATGCCATTGTGCTTATACTAAAGGATATGTAGCCCATCTCTTGAGCTGTTAAACTGTTTTGACTACTTTAAATCGTGCAGCTGTGAGCATCTCTGTAAATTTAGTGTACACATGTATCCCCTGGAGTGGCATTGCCTCGGCAGTGAGCACTTATGGTTTTATAACTCTCTTCACAGACTCAAATGACTCCAGAAAGCTACACTTCCTGTTGTGAGTATATGATATCCATTTCCCTACATAGCCACTAACATCAGGTTTTTACAATTTTATTTATTTCTTGCTACTTTAAGAAATTTTTGTGGTGAAATACATATAATAGAAGTTGACTATCTGAATCATTTTTAAGTATACATTCAGTAGTGTTAAGTATGTCGCCATTGTTGTACAACCAATCTCCAGAACTTTTTCATCTTGCAAAACAAACTCTGTACCCATTAAATAACATTAAACATTCCATTCCCTCCAGCCTCAGCAACCCCATTCTACTTTCTGTTTCTGTGAGTTTGACTATTCCAAGCACTTCATATCAGTTAAATCATGAAGTATTTGTCTGTCTGTGACTGGCTTATTTCTCTGAGCACAGTGTCCTCGAGATGCGTCTATGTTGTAGCATATGTCAGAATTTCCTTCCTTTTTAAAAGATCCAAATAATATTCTTATTTTATATCTTTTTTTTATCCATTCATCCATTAGTGGACACTTGGGTTGCTTTTGGCTATTGTAAATAATGGTGCTATGTACAAATATCTATATTATTGTATTTACAAGTATAATGCTGTAATGTACACACATCTTTTTGAGATCCTACCTTCAGTTCTTTTGAGTATATAGCCAGAAGTGGTATTACTAAATCTTACGATATTTCTATTTTTAATTTATTGAGGAACCACTGTAGTTTTTCATAGCAACTGCACCATTTTACGTTCTCACCAAGAGTGCACAAGGGTTCCGAGGTTCCCACATCCTCCCCAACACTTGTTATTTTCTGCTTTTTTTAGATTGCAGCCATCATAGTGGGTGTGAGGTGACATTTCATTGTGGTTTTGATTTGCATTTCCCTAATGAGGAGTGATGCTGAGCATCTTTTCATATGCTTACTGGTCATTTGTATGTTGTCTTTGGAAAAATGTCTATTCAAGTCCTTTGACTATTTTAAAAATTGGGTTATTAGAGTTATCGTTGTTGTTGACTTGTAGGAGTTTCTTTCTATATTCTGGATATTAATCCCCTATCAGATATATGATTTGCAAATATCTTCTCTTATTCCATAAGGTTACTTTTTCACTTTGTTGATTGTGTTCTTTGATGTATAGAAGTTTTTAGTTTTGAAATAGTCTAATTTATCTGTTTTTACTTTTGTGGTCTGTGCTTTTGGTGTCATATCCAAGAAATCCTTGCCAAATCCAACGTTATAAGGTACTTTTAAGGTATTTTAGTTGTCTTAGTCTATATTTCTGTACTCACCTTTCTTTATCCACTCATCAGTTGATGGGCATGTAGGTTGGTTCCATATCTTTGCAATTCTGAATTGTGCTATGATCAGGTGTCTTTTTAGTATAATGATTTACTCTCCTTTGGGTAGATACCCAGTAGTGGGATTGCTGGATCGAATGGTTTTTATAATTTTCTATTTTACCACAGTTTCTCTCTGCATTTTTCCTCTTTGACCACTAACCATGTGAAATTCTCATATTGACCTTTATAATGATCATGAACTCTTAGTATCATTGGGAAGGCCACATTTGCCACTTATGATTGTAAACCTTATCCTCCATTTTTCCTGTTATTGTTGGTGCAAAAAGCACCTATTATACCAGGACTTTAAAAATCAGTCTGATAAGTCTTTGATAAGTCTAATAATAATAACTGATAAGTCCATTGAATTTGCTTCTGATTACTTTTTCTTTAGTAGCTAAACATGTATGTACTCCTATGATTACAATGAACACTCCTCTCCATTTAAATTAATTATTTACATTGATGAAATAGCAAAATGTTAATGACTAAATACTGTCTTGGTTTTTTCGTTCCAGGTCAGTCAATATTAACTTCTTATAATTTTCTTTTTTTTCTTTATGTGTGTGTGTGTGTGTATTTTTTTTTTTTTAATTTCAATGGCTTTTGGGGTACAAATGGCTTTTGGTCATATAGATGAATTCTACAGTAGTGAAGTCTGAGATTTTACTGCACCGGTCACCTGAGTAGTGTACATTGTACCCAATATGTGGTTTTTTATACCTTGCCCCCCTCTTACCCTCCCCACTTTGAGTCTCTAGTGTCCATTATGTCACTCTGTATACCTTTTTGTACCCATAAGTTAGCTCTCACTTATAAGTGAGAACACACAGTATTTGGTTTTCCATTCCTGAGTTGCTTCACTTAGAATAATATCCTCCAGCTCCATCCAAAATTGCTGCAAAAAAAAAAAAAACCACAAACATTATTTTGTTCTTTTTTATTGCTAAGTCATATTCCATGGTGTAGAGATACCACATTTTATTTATCCACTCACTGGTTGATGGGTTGGTTCCACATCTTTGCAATTGTGACTTGTACTGCCATCAAGTGTCTTTCTGGTATAATGACTTCTTTTCCTTTGGGTAGATACCCAGGAGTGGGATTGCTAGATCAAATGGTTCTTAACATTTTCTCTCTGGATCTATTTCTGGAAATTTTAGGCTCCAGTTTTTGTTGTTGTTGTTAATAAAATGCAATGGAATGTAATGATCATCACTTTTCATTATGCTTTAAAATCTGGTAAATGGAGGCTAGAACACTCCTGTAAGGCAAGAATATTCTCTCTGTTGGAACTCAAATACACAGAACTGGGTAAATCTCAATCTTAATCTTTGATTCAGGACACAACATGGCTCTCTTTTACTTGCTTTCTTTAATTGTTTTTTAATAATGTGGTAAGCATTTCTGAATCTCCTATCCAATACAAAAACTAGGACAATACAGACAGTAACTCCTATGGTTACAATGAACACTCCTCTCCACTTAAATTAATTATTTACACTGATGAAATTGAAATAGCAAAATTTTAATGACTAAATACTGTCTTTGATTTTTTGTTCCAGGTCTGTCAATATTAACTTCTTATAATTTTCTTTTTTTTTCTTTATGTGTGTGTGTGTGTGTGTATATATATATATTTAATTTCAATGGCTTTTGGGGTACAAATGGCTTTTGGTCATATATATGAGTTCTACAGTAGTGAAGTCTGAGATTTTACTACACCTTCCACTTATGTGGTCCCACACCACCCGCCTCCCCTGCCGCCTCCTGCCACCCCCTAGGCCAAGGTAATAATCATCCTGAATCCTGGGTTTATCTCTCACTTGCTTTCTTTTCATATAATTTTGCAAAAGAATCTGATCTAAATGTGTTTTTCAGAGTATATATTTATATTTTAGCTGTTCTTAGAGAAAATTTATTATTTTGCATGTAATCTTATGGAACATTCTCATTTAATACCATGGTAAGATTCAGCCCTTGCCCAGGGGATAGTTCATTTAGTTTGTTTACTGGATAGAGCTCATCATGTGACTATACCTCAGTTAGTTTATCAGTTCTCCCATCCATGGTGACTAGGTTGCCTCTCAGCCTCTCAACAACACTGTTTCTCAGTGTCCTTGTAGAAGTGATATGTGGGTGTTTTCTCCTTACACAGAGTTGAAAGGTGACGACAACAACGTTGGCACTACCAATCCCCCACCCTCCAGAGGGGTAACCAGTGTTACCAGTTTGCTGTGTTTCCTGCTACACCTCGCCTTATTCACTTCCATTTGTATCTGAAAAACGTGTTGCATGGTTTCTTTTCTATAGAAGTGGTAAAATGCTATTGTGTCCTGTACATTATTGATTACTTTTTTTCATTTAACAGTAGGGAGATGCCTGGGAGTACACAGAGAACTGCCCTCATTGTTTTCAACTTCTGCACTGTATGTCTGTGAGTTTAGCCATTCTGCTGTTAATGGAAATTTACAGTATTCTAATCTTTTGATATTACAAACAGTTCTGTGCGATCATCGTCATACACAACCCCTTGTGCACAATGCATGAGTGTTTCTCAGGGTAGGTACCAAGAAGTGAAATTCCTGGGTCATAGGGCGTGAGTCCGACATTTTTCTCCATTCTGCCCTGTTGCCCTCCAGAGTGGGTGTCCAGCTTTGCATACCTAAGTATGAGAGTATCTGTTGTTCATATCCTCTACGACGCTCCATATATGAAACTTAAGTTTCTGCTAGTTGCCATCTTTGATCTATCATGTATGCAGTGACCTACTAAGACTGTAATTGGTACAGTAGATTCTTGTCATCTGTGTGTGAATTTAGCATTCATGGGCTTAATGCTGACAAGGCCCCCAGGGTCCAAGACATATAATCATGTATAATTTTGTCAAGGTATAATTTTTTAAATTGCTTTTGTCATGTGTCTGCTGGTGATGCCCAACCCAGTGCTCTGCACCCAGGTCACACTGTGGCTTTGTCCTCTGCTTATGCCTGCATTGCAGCAACTGTCCTGAAGAGACCAAAATTATGCAGATTTAGGTAAGTCCATGGCTAATGTTATTATATTATGTGCTATTGTAATGGATGGGGCTGTGGAGTGTATGAATTTATAAATCACTGGTCTTGTAATTAAAATTCAAACACTATAGAAAAAGGCCATGTAGAAGATAAAAGTTCCTCTATAATCCCGGACCCCTAAGATAACTACTAATGACAACTTCATTTATATTCCTTCAGACATTTTCTGGCTGTGGATGTACTAAAATGTATCCTATTATTCTCTGCCCTAAAATGGAATCATACAAGGTGTACTGTTATTTTTATGGCTCTATAACATGTCATATTGTACGTGTTGGTATGGTCATTTTAACCATTTTTCTAGTGATGGCTTTGAGGTTATTTGCAGTTTCCTAGCCATCTCAAAGTGTGCTGCGGGGATCTCTTTTGCATCCCTCTGGGTGCAGAGCTGAGGCACCCAGAGGCAGTGTCCAGAGGAGGCAGCATCTGTAGGTGTCTTCACCTGCTCTGGCTCTTGGCACATCTGGTTGGTGACACTGTTTTGTGAGATGGGTTGAAAGCACGTGCTGCCAAAATAGAATAATGTTGGTCCTCTCCTCATGTGCCGTGGAACTGGGGTAAAACTGCGTAGTGGCTGCAGCTGCCTGTCCATACCGGAATCGAGTATAACACGGTGCCTGGCTTAGCACAAAACAGTAGTGGGTCCTGCAGGCCCCAGAGTCTAATTCCTGGTATTCTTTCCCCTACACAGATTAAATAAACCAAAAACAAACTATTCTAGGAAAGCGTCTGTGACATTTGTAAAAAGTGGTATTTAATGATCTTTTATTCACTTGTCTGTTTAGTTTGTTGAAATCTTAAGTGGCATCCTGGTCTGGGAAGGAGTGCTGTCTGCGCCTGCCCTCCGCTGGGCACAGCGTGGCTGCTTCAGGGGCTAAGCACACACTTTCTGTCTTCTAAAGGGCCGCCACATGCCAGGAGCTCAGGTGTGAGCCCGGCTCTGGCTCTTACCTCATAGGGTCACTCATAGGGGCACAGGGAGCAGAACATTGTACACAGCGAGGCACCACCCGGCTTGGCATCTGCCTCGGTGGACTTACTACCTCTAGAAGGAAATACCTGAGTTCCTCTGGCCTCAGCTCCTAGAGTGACTGGTGTGCTGTCCCTGTTACTCTTCTGTCAAGGTGACAACTGTGTGACCCATCATCTGTGTGTCAAAGCAAGGCCCTGCCTGGGCCTCTGCTCCTGTGCTGACCCCAAAGGCAAATGCTTTGCTAGTTTCCTTCCAGTTAATTTCACCTATGAATAGATGTGTGAAAACTGTTCAAAGCCATACCTGCACATGTTTGAACTTCAAACCCTGTGGGTGATTCAGTGGCATCTTTCTCTAACCCCCAGCCTCCCTTCCCACAGAGGCCACCGTCATGGCCAGTTGCTGCAGTTTCTTTCCAGAGAACCTGTGTATGTGTAAAGCTGTACAGGCGTGGGTACACCACACAGCCTGTCTTGCACTGTGGACTGTTGAGTTACTAGTACATCTAGGTAAGCACCGCATATCTGTATTCATGTCTGCCTTGGTCTTTTCAACATCTGTGTGGTAGCCGTGTTTGAATTACCCATTCCCTTTTTGGGGAACCATTAAGTTGTTTCAGCAATTTTTACTGTAGATAAGGCTATACCGCATATCTGTGTACATGGGTTTTTATGTACATGGGCAAGTATATCTGTGAGAGAAAAGTTTCCTCAGGAGGAATTCTGGGCACAGCATGTGTAAATTTCTAAATATGATGGACACCCCCAGCTTCCACCTCAAGGAGGTTGGTCCCATTGACATTTCCCCACACCTTCACCCAGGCTGTGCCCTTAAACTTGGTTATTTGTCAATGTGAGAAGTGGAAAATAGTATTTAATTGTAGTTTGGATTTGTATTTCTATTGGGTTGTATACTTACTGATTAATAATAAGAGCTCTTTACATATTAAGGAAATTAACCCTTTTCAAATACATTCCTATTTCTCACTAATCTTTAAGTTTTATTGTAATATTTTGCTCTTTAGTTTATATATATATGTATATATATATATATGTATATATATATATATACATATATATATACATATATATATACTAATTTTCTTTTATGGTTCCTGGATTTTGTGAGTAGTTTGAAAAGGCTAATCCAGCTGAAGATTTTGTTGTTGTTGTTAAACCCCATGTTTTCTCCTAACTCTTTTTATTTTTATTTTGGAGGACTCTATCTAGACTTAATTTTAGCATAACAAGTGACAGGGTTAGTTAGCCTGTTGTCCTTACACCATTTTCTGGCTAATACAGCTATTAACTATTGATCTGTCTATTCACGTGCCAGTTCCTAATGGTTTTACATAGTGTAATCTGCACTTCAAAATAGCGAAGGGAAGCCCTACCTCATTATTCTACTTTTCCAGAATTCTCCTGGCTATTCCAGGCTGCATGTTTACCTTAACCTTCCCTGTGATGTCTTCATGCCGTTGTCTTCTTATGCAAGAATAAGGTACGTCTTTCCATCCACTCACGTCTATTTAATTTGACTTTGCATTACACAGAAAGCTGGTCTTGGTCTGTCTACCTCGGCATCTAGTTGTCCTCACTGCCCCCTAGCCGACCCCACCCCATCTGACTGACTACCCCATCACAGAGTACTTTTATTTACGTTTTGCTCTGCCTAATGGTTACTTGATACTGTCACGCCGACAGTGTCCAGTTCAGTGGTCTTTGCAGTTGAAATGCTCCCGTACACACTGTCTTGTTAAAAATGCCAGTAAGTTCATACAAACCCAGCTTGCACCCAAGGTCACATTCAGAGAGCGTAGGGCTGGGATGGGTTGTTTTCCAAGCTTCTGCCACTGTGTGGCTAGCTCTTCCCACTGGGAAGTTCTGTGTACCCGGAATGTCGGAGTGGAGTCCTGTTCTAGTGTCCAGCACCTGACCCTGTGCCCAACCCCTCAACAGCCTATTCCTGCTGTCCACAGCCTGCTGGAACTTTTTACAAAATATGTTGCCATGCTGGACCCTGGGCACTGGACATAAGCCCCCTGGCAGCCTTTTTCATGTCACCCAAAGGGGTAATTGTCCTACTGGTGGTCTGTAAGATGAGTTAGGGTGACTTGCTAATAGACATTGTAAATCTTAATATTTATGTATGTATTTTATTATTACCGGTTTTCCATTTATGATGGTAATATTGTTTCTTCTAAGAATATTTATTTTTCCTTCTAAATATTGAGATAAAATTCATGCTTTTGAAATGTTCTATTCAGTGGCTTTTAGTATATTTGCTATGTTGTGCAACCATCGACACTATCCATTTCTAGAACTTTTTCGTCATCCCAAACAGACGCTCTGTATTCATAAAAAAATAACTTCCTACCTGTCTCTCCCCCTAGTCTTTGGTAACCTTTGTTATACTGGTAAACTTTGTTGTGCTCTCTGTCTGTGTGAATTTGCCTATTCTAGGGGCCTCATATAAGTGTAATCATACAGTATTTGTCTTTTTGGGTCTGTCTGATTTCACTTAGCGGGTTTTCAGGGTTCATTCATGTTGCAGCATATAACAGTACTGCGTTCCTTTTTCTGGCTGAATAATATTCCACTGTATGGATAGACCCCATTTTGTTTATTCACACATCATTTGGACATTTGGATTATTTCTGGTTTTTGGCTATTATGAACAATGGTGCTATGAACAGTTGCGTACAAGTTTTTGTGTGAACATATGTTTTCAATTCTCTCATTATATACCTAGGAGTAGAATTACTGGGTCATATGGTAACTGTATATTTTTGAGGAACTGCCAAACTATTTTCCCACGTCCATGCACCATTTCACATTCCCACCAGTAAGTAAGAGGGTTCCAATTTCTGCGCATTCTTGCCAACACTAGTTATTATCTGACTTTCTGGTTATAATCATTCTAATGAGTGTGAAGTAGCCTCTGGTGTCATTTGGATTTGCATTTCTCTGATGAGTGATGCTATCAAGCACCTTTGCTGGTGCTGTTGGCCATATGTGTATGTTCCCTGGAGAAGTGTCTGTGCTGAGCCTTGGCCCACTTTTTAATTAGGCGTTTGTCTTTTTATTACTGAGTTGTAAGAGTTCTTTATATATTCTGGATTCTAGACCCTTATCAGATACATGGTTTGCAAATATTTTCTCCCATTCTGTGGGTTGTGTTTTCACTTTATCGATAATGTCCTTAGACATATAATAAATTTGTATTTTAAAAGTGACTTGATTTGGCTGTGCAAGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGACTGAGGTGGGTGGATCATATGAGGAGGCTAGGAGTTCGAGGTCAGCCTGGCCAGCATAGCGAAAACTTGTCTCTACTAAAAATACAAAAATTAGTCAGGCATGGTGGTGCACGTCTGTAATACCAGCTTCTCAGGAGGCTGAGGCACGAGGATCACTTGAACCCAGGAGGAGGAGGTTGCAGTGAGCTGAGATCATGCCAGGGCAACAGAATGAGACTTTGTTTAAAAAAAAAAAAAAGTGACTTGATTTAAGGGAAAAAATGACTGGCTATATTCAGTCAGATATGGCAAAAAGTCTCAAGGTGTTAATGTGAATGATTAAGGTCTTGGGGGGGGTGTCCCCTATCAGACTACAGGTGTTTAGAGGCACAGAAAAAGGTGCAGTTGGGTTCTTAATGTGAAATGATGAGAAGCACAACTCCAGTGTGTCTCTTTGTGTAGAATGTCAGCAGACACCCCCTGCTAGATGTGCTGGATCATGGGAAAGCATTTCCATTTGTTACTAGATTGTTCAGAAGTTTTAATTTATGATGGGTGTGGTGGCTCATGCCTGTAGTCCCAGCACTGTGGGAGGCTGAGGCAGGAGGATCATCTGAGGCCAAGAGTTCAAGATCAGCCTGGGCAACATAGTGATACCCTATCTCTTAAAAAAGAAGAAGTTTTTAAATTTGAAATAATAATAGGTACTGGATTTATGCAAATGTCTTTTCTGCGTCTTTTGAGATGAGTATCAGGTTTTTTTTTTTCCTTTTATCATCTGATGATGAACTTAATGTTTCCATTTGTATTAATGGAATACTAAGTCCCTCTGTGATTTCTGAACCAAGCTATTCCTAGGCCTGAGTTTTATTTTGTTGACACAGAAATAAATTAGAAGGCCAAGCGTGGTGGCATGTGCCTGTAGTCCTAGTTGCTGAGGTAAGAGGATTGCTTGAGCCCAGGAGTTCAAGGCTGCAGCAAGCTTTGATTGCGCCACTGCACTCCAGCCTTGGCGACAGACTAAGACGCTGTCTCAAAAAAAAACAAAAACGACAAAAAAAAAACAAAACAGAAAAAATAAACTAAGGCAATGACAGTCCCTGGCAAATGCTGGGAGGGAGGCAGCAGTGGTCAGGGAAGGTAACCCTGAAGCAGGACTTGTAAAGCAAATAAGATTGGGAGGCCAAGGTGGGTGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGTGAAACCCCGTCTTTACTAAAAATACAAAAAAATTAGCCAGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCTCGAACCCAGGAGGCGGAGGTTACAGTCAGCTGAGACCGCACCATTGCACTCCAGCCTGGGTGACAGAGCAAGATTCCGTCTCAAAAAAAAAAAAAAAAAAAAAACCAAGAAGAAAAGGAATGAATTAGAACTTCTTCTGCTTGGACTTAAGGGCATCATCAGGCAGGTTTTGGGTAGGATAGCAGGGGAGGCAGAGACATAGTCGGGGTCAGTGGTCATGAGTGTGGCTTTGAGCCCAAAAACTTGGTTTCTGTTCCCTACTTTGCCACTCAGTAGTGCATGACTTTGGCCAAATTTCTTAAATTCATGAAGCAAGTTTCCGGGTGAATGAAATGGGGATAAAAATAGTGTTCAAACCTATCCGTTGGTTTGTGTGAAACTGAAATGAATAGTATCGTGCAGGTACTTGTGAGCAAGGGGAGCTGCTGTTTCCTGTCCCTTTATGATGGGAAATATCTAGACAAGTTCCCAACCCTCTGCACTGCAGGCTGCATGGCACGGAGGGTCTTGTAACACCAGCTGGGGCTGGCCTTCTTTTAGGAGCTTCAGTGGTTCTGAAAACTTTTATTTGTTTGTTTGTTTTAGTAGATGTGGGGTCTTTCTGTGTTGCCCGGACTGGTCTCAAACTTCTGGACTCAAGTGATCCTCCCCCGCTCAACCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACTGTGCCCAGCCTTGAAAACTTTTTCAGGTTCTTCCAGGGTTACTGGGCTATTAAATATTTCTATTTCATTATAAGTCAGTTTTTCAAAGTTATATTATCTTAATTACCTTTTTTATATGTATTAGTGTAGAGTAGCATTTTATATTTTGATATCCTCCTTATGCATAGTTTTTCACTTTTTATTCCTAGTTTTTCGTTTTTAATAAGACTTTCAAGAAATTTATTTTATTGGCCTTTTGAAAAAAGCAGCTTTAGATAAAGTAAGCAGTTCTGCTTTCATTTTATAATTTATTTCTACTTTTGTTTCATTAATCTTTTCCTCCGGCATGCCTTGGATTTTGTTGTGTTACTCTTTTTCTAGAGGCTCGCATTGTGTGTCTGGTTCACTTATGATCACGCTTGCCTACTTTTAAGAATGGAAGAGGGGAGGTGGAGGGTGGCTGCACAGTCGAGGGTGTGAGGCAGTCTTGCTCTAGCCCCACCATGCCCTCAGCCCGCTGTGGCCACGCTGGTTCCTCAATTGCTGGGGCGTGCAGTGTCTGTAAGGGAGGCTACTGATGCCATCCGAGGAAGATGTAAGGTTTCGTGTGGGCAGCGAGAGCCTAGCAGGCATGTGGGGTGCCCAGCAAAGGGTAACAGTGGACAGTTGTTGCCTCATTCCACAGAGTTTTGATTTTTTTTTTTTTTTTAATGGTCACTCCATCAACATCCCCCATGGCCAGAGCCTGAGCTGGTCCCCAGAGACACAGGCATTCAGCTGACAGCCTCGCCTTCACGCTGCTGCTGTTCTCATGGGGGACAGGCCTCAGGTGGCAATGCACAAATCATTAGTTAAGGGCAGTTGTGACAGTTACCAAGGAGTGTAGTCCCCCGCCCCCCGCCCAGTGAAAACAGCCCTAACCAGGGGTGGGGACCTTTGGGCTCTGACCCGAAGGGTAGGAGAAGCTGGAAGGACAGCATTCCTGTCTGCGAAGGCAGGAGCAAAGCTGCCAGGCTATGAAGGAAATGGCTGGAGCCTGAAGTCATGCAAGCTGGGGCTGGCAGGGACAGGGCCAACTTCCAGGCCTGGGGGCCACCATGAGGATTCAGGACGTGACCCCCAGGGCACATGAAGGCCTTCCATCTGTATTTAAGAAAAGACTTTATCAGACGAGTATGGTGGCTCACGCCTGAATCTTAGCACTTTGGGAGGCTGAGGCAGGTGGATCACGAGGTCAGGAGTTCAATACCAGCCTGGCCAATATGGTAAAACCCCATCTCTACTAAAACTACAAAAATTAGCCAGGCATGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCACTTGAACCCGGGAGGTGGAGGTTACAGTGAGCCAAGATCGCGCCACTACACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAACCAAAAGACTTTATCTTATTTCCTATATGTTTGTGGTTTCAGTCCTGATGTATAATTTGACCCTAGTTAGAATGGTTATCTGAGGAAGTGGCCTGTACGATTTCTGCTTTTTTAAATGTGTGGCTCCCTTTCTTCATTGATTAACGTATGATTATTTTTATAAATGTTCCATGGCAGTGGGAAGGGATTCTCTGTCACATTCCACATCTGGATCAGTTCCTCCCCATTTTGTTGGTCAAATCCGATCTGCCATATCCTGTGTAATGACAAGTGAGTTGCATTCTCACCGTCACTCCTGGGGTCTCTCCGCTTCCCCTGAGCTGGCTCAGCAGTCTGCTCCATGTGTTTTGATGCAGGGTGACCCATTGGTATTCCCGACACTAACGCCCCCGTCTGTGGACTGCTTGCTGCTTGGGCTTCACTGTGTCTGGTGTTGACAGTGCAGACCTAAAGGTGTGCACACATGTGCACACACACTCCGCTGTCTTCTTGTTTGCACTGGACTTAAATATCTATGAGGGTTATTTTCAACTGCTGAATTTGGAATGATTTTTATATCTTTTCTGCTTTCTGCCCATGTACATGTGTTTATTTTACACTGTTGTGATTGGTAGTTACTATGTGGGGACACAATTACTTGGGCTGAAATAATCCACCTGTTGTGGTTGGGGTCCTCTGGGGCATTCCAGGGTGAGAGGTTGTCACTGCCACCTGGGCCATGTGGGCCGGCACCAGCATTTTGTGGTTACGAATTCTACAGTCACAAATATCTTTGGGCAAATCCCCTTCTATACCTCAAGGCAGCTTTTGGTTTGCAACCCCACTGGCCAGAGGGAAGGGCCAGTCACTTGGCTCTCTCACTGCCCTGCGCCCCAGATGGTTCTAGGGCTGCTGTTTTCCCTTGGCCCTGCCAACACCACTGTTTTTACTTCTGCTCATTGGCTGAGTGCAGTGGTTCCTGGAAGCCAGTGGCACGTTTCCCCGCGTAGCTCGCTTATCCCACAGCACACACCCAAGGGTTCTGTTGCTAACACGCTGAATTAATTCTTTGCTCATCTTACAGAGTGTGTTTTGACTGCCCCCATTTCTGAGGCCTTGTAAGGCCAGAGCTTTGTTGCTTCATCGGCAGGTTGGGACTTAGATGGCCGTGAATGTTTCCTCTCTGCTGCTGCAGTAAGTAAGTGCCCGCACCATAGTGTGTTTGGAGGCTGAAGTTGAAGCGAGGCTGTGAGGGGAGATGGACGTGTGAGGAGGGATGATGGGGCTTGAGCAAAGTGGGGGAGGGGGCAAAGGCAGTTGGCCCAACACATTCCCCACCCCTTTGAGAGGTCTGAGGCCTGCAGACCTGGCTCGGAGCCCACCTGGTAGTCCTCAGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAAGAGAGAAGTTGTGGAGAAATGGGGGGCTGATTCTGCTCAGATTCATCAGGATGAGTAGAAGGCACCCAGCTCTCACCCTGGCCTGACATGTGTGTCCCTGAGCAGGTTACAGTCCTCTCTGAGCCTCTGCTTCCCATCTGGACCCTGCTGGGCAGGGCTTCTGAGCTCCTTAGCACTAGCAGGAGGGGCTCCAGGGGCCCTCCCTCCATGGCAGCCAGGACAGGACTCTCAAATGAGGACAGCAGAGCTCGTGGGGGGCTCCCACGGACCCGCCGTGGGCCCAGGGGAGGCAGAGCCTGAGCCAACAGCAGTGGTGCTGTGGACCGTGGATCCTGAGGGTGGCCTGGGGCAAGTACCGGCTGAGGGTCCAGGTGGGCTTTGTGTACCTTTGGGTCCTGGGGCCCTGGTGACTTGGACTCCAGGTTAGAGTCAAGTGACAGGAGAAAGGCTGGTGGGGCCCTGTGCTTCCGACTTCATTTCGAGTGATGGCAGTTCCCAGGAAGGAATCCACAGCTGACGGTGGCTGACAGATCAGAGAATGGAAGGCGAGGCAGGCGGGCGTCTGCGTGACCTCAGGTGCTTGGGGCCCAGCAGACCCAGAGAACCATTTCCACTAGGCCAGGGTGCCGGAAGTGTCCACAGGTCTTAGATTCCCTGTTCAGATGAAAAGATTTGTGCCTTTAATGATAAAAGTGATCTGCATAGAGTCAAAAATTCAAGCCATGGGTATAAAATGCAAGTAAAATCCCTGCCCTCACCTATCCCACCCTACTACACAGAGATGTCCTCTCGAGTTTCCTAGACTCACTCTGGAAATTTCTGTATACACACAGAAGCTTGTGCCTCTGCTCGTGAAGGCAGAGGGAGGGAGAGCTGAAGGGCCAGCACCTTCTCACCTGTGGGCCCCCTCAGTGCTCGGTCCCAGAGCATGCAGGACTGTGCCTCGTGTTCAGTTTGCTGGTCTGACTTCATGCTCCTTGGGCAGGATATGCATGTGCCATGCTAGGAGACATGTGGATGTGAAGCTGGGGGACAATGTCCCCTGGCTATGCCTTTACAAGGGAAGTAAGGAAGGTAGGAGGTGAGCCTGGGAGGGAGGGAGGGAGGCGCGGAGCCGCCGCAGGTGTTTCTTTTACTGAGTGCAGCCCATGGCCGCACTCAGGTTTTGCTTTTCACCTTCCCATCTGTGAAAGAGTGAGCAGGAAAAAGCAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000417473.2&diff=890615ENST00000417473.22014-10-11T02:22:47Z<p>124.202.190.20: </p>
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<div>Please input one-sentence summary here.<br />
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==Annotated Information==<br />
===Name===<br />
LINC00570 <br />
<br />
===Characteristics===<br />
Multiple 2-4 exon isoforms with variation in splicing and TSSs. Isoforms between 380 nt and 1.3kb. Intergenic between ROCK2 and E2F6. In-vitro translation showed no sign of protein product.<br />
<br />
===Function===<br />
LINC00570 expression appears to stimulate ROCK2 gene expression (in HeLa cells).<br />
<br />
===Expression===<br />
Expressed in HeLa cells.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000417473.2|<br />
source = Gencode19|<br />
same = lnc-GREB1-4:1,NONHSAT069164|<br />
classification = intergenic|<br />
length = 1330 nt|<br />
location = chr2+:11534107..11543203|<br />
number = 3|<br />
exons = 11534107..11534297,11540498..11540583,11542151..11543203|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr2:11534107..11543203&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CGGAAGAGTGGGACGTTATGGAACCTTCTCAGCTTATTCAGAGAGGCTTCTTCTTCCTATTTAGTCTCCCTCTGGCTTTCCCTGCTGGGATCTGGGTGGTAGAAGCAGCAGGGGGATCAACGAACAGGCTGAGCGCCAAGAAGCCTGAAGATTCCAGAATCTAGCGGGAAAAGCATTCAGAGTCAGAATGAGCCACTTCCAGCATCGATGGTGTCAGGTCAGGTCCTCTGGGTAGAAGAAATGGAGTCAGTTAGGAGTGCTGGAGACTGAGTAAGAGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGCTCCTAATTTTCTCATGTCAGACATAAGAAAAAAAAATATTTTTTAAAGAAAAAGCTTTAGGTTGCAAAAATCTAGGCCTTTCAACTTTAAAATCCTATTCTTGCAAGCCTTGGAGAATAAAGCTTATGCATAAACAGTAGATTTGGAAACAGAAATATGCCTAATTACCCAGAGCCATTCTTTCAATACGCCAGTGATTGTTTAAAGATTCTATAGGCTGGAGTCAATGGCAGGAGGCGGGTGGGAAAAGAGTCAAGAGGGAGGAGAGAAGAAGCAAGAGGGTTGGGTAGATATTGTCACATGACCCTGAGAGGAGGATTCTGGGTCAAACCCCTAGGGGGTTGTGTGTAATGGAGACTCCAGATCCATTTGGGAATCTGGCTCCAAAGAAGACTTCACCTTGCCTTCTGAGTGGAGCCCTGAAGTGGCAAGACTCATAGAATTCCCCCACGGGTCCACACAAGAGAGAATGAATAGAGAAGGCTGCGTGCTGGCTGGACCAAGGCAGCCTCGGGTGACACCACCACCACCACCGCCGCTGCCGCCATCGCCATCACCACTGCCGCTGCCATCACCGCCACCACCACCACCATCACCACCACCATCACCACATTATGGACAATAGCCCAATGTTTCCTGAGTTCCCTAGAGGGTTGAAAGAGAATAGGACCTAGAGAGATCACATAGTTGGGACAGGCACTCATTAATTTGATCCAATGACAAGAGACCAGATGGGAAGAAGGATGCCTTGAGAGATGTCAGTGTGCACCCATGGATAGAAGCAGCTGGTGACTGGGTACTTGGGAAGCCACATGGACACACACAAAGCTCCTGGAAGACGTTTTCAAGGAGTTGGGCTGTGCTGGGATCCAGAACTGGCTGAAGAAACCATGAGCTGACATAAAATTTCTGCCACCTAGCAGAATGGAGGCTCCATTTGGAAATTAAATTATATACTTAAAAAAACTA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000453100.1&diff=890614ENST00000453100.12014-10-11T02:22:04Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
LINC00570<br />
<br />
===Characteristics===<br />
Multiple 2-4 exon isoforms with variation in splicing and TSSs. Isoforms between 380 nt and 1.3kb. Intergenic between ROCK2 and E2F6. In-vitro translation showed no sign of protein product.<br />
<br />
===Function===<br />
LINC00570 expression appears to stimulate ROCK2 gene expression (in HeLa cells).<br />
<br />
===Expression===<br />
Expressed in HeLa cells.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000453100.1|<br />
source = Gencode19|<br />
same = lnc-GREB1-4:3,NONHSAT069166|<br />
classification = intergenic|<br />
length = 399 nt|<br />
location = chr2+:11539180..11542384|<br />
number = 2|<br />
exons = 11539180..11539344,11542151..11542384|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr2:11539180..11542384&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>ACTGTGCCCTGGATGTGAGACGTGGAATCAAGGAGATTATTTTGGAGCTTTAAGACGTAATGGCACCCTGCTGGGTTTCAGACTTGAGTGGAGCCTGCAGCCTTTCTTTCGGCCGGTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGCTCCTAATTTTCTCATGTCAGACATAAGAAAAAAAAATATTTTTTAAAGAAAAAGCTTTAGGTTGCAAAAATCTAGGCCTTTCAACTTTAAAATCCTATTCTTGCAAGCCTTGGAGAATAAAGCTTATGCATAAACAGTAGATTTGGAAAC</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000432665.1&diff=890613ENST00000432665.12014-10-11T02:21:17Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
LINC00570 <br />
<br />
===Characteristics===<br />
Multiple 2-4 exon isoforms with variation in splicing and TSSs. Isoforms between 380 nt and 1.3kb. Intergenic between ROCK2 and E2F6. In-vitro translation showed no sign of protein product.<br />
<br />
===Function===<br />
LINC00570 expression appears to stimulate ROCK2 gene expression (in HeLa cells).<br />
<br />
===Expression===<br />
Expressed in HeLa cells.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000432665.1|<br />
source = Gencode19|<br />
same = lnc-GREB1-4:4,NONHSAT069167|<br />
classification = intergenic|<br />
length = 373 nt|<br />
location = chr2+:11539295..11542387|<br />
number = 3|<br />
exons = 11539295..11539344,11540498..11540583,11542151..11542387|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr2:11539295..11542387&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGGCCACTTCCAGCATCGATGGTGTCAGGTCAGGTCCTCTGGGTAGAAGAAATGGAGTCAGTTAGGAGTGCTGGAGACTGAGTAAGAGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGCTCCTAATTTTCTCATGTCAGACATAAGAAAAAAAAATATTTTTTAAAGAAAAAGCTTTAGGTTGCAAAAATCTAGGCCTTTCAACTTTAAAATCCTATTCTTGCAAGCCTTGGAGAATAAAGCTTATGCATAAACAGTAGATTTGGAAACAGA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000437795.1&diff=890612ENST00000437795.12014-10-11T02:20:35Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
LINC00570 <br />
<br />
===Characteristics===<br />
Multiple 2-4 exon isoforms with variation in splicing and TSSs. Isoforms between 380 nt and 1.3kb. Intergenic between ROCK2 and E2F6. In-vitro translation showed no sign of protein product.<br />
<br />
===Function===<br />
LINC00570 expression appears to stimulate ROCK2 gene expression (in HeLa cells).<br />
<br />
===Expression===<br />
Expressed in HeLa cells.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000437795.1|<br />
source = Gencode19|<br />
same = lnc-GREB1-4:2,NONHSAT069165|<br />
classification = intergenic|<br />
length = 490 nt|<br />
location = chr2+:11539128..11542234|<br />
number = 4|<br />
exons = 11539128..11539344,11539798..11539900,11540498..11540583,11542151..11542234|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr2:11539128..11542234&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>AGAGCCCCAGAGGCAGAGCTGCCCAAGGCTTTGGGAGCCCACCTCTTGCATCACTGTGCCCTGGATGTGAGACGTGGAATCAAGGAGATTATTTTGGAGCTTTAAGACGTAATGGCACCCTGCTGGGTTTCAGACTTGAGTGGAGCCTGCAGCCTTTCTTTCGGCCGGTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGACGTGCCCGTGTCCCCTTCCTCCACCACAAGATTGTAAGTTTTCTGGAGCCTCCCCAGAAGCTGAGAAGAAGCTGCTATGCTTCCTGTTCAGCCTGCAGAACCGCCACTTCCAGCATCGATGGTGTCAGGTCAGGTCCTCTGGGTAGAAGAAATGGAGTCAGTTAGGAGTGCTGGAGACTGAGTAAGAGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGC</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000417262.1&diff=890611ENST00000417262.12014-10-11T02:19:48Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
KDM5BAS1 <br />
<br />
===Characteristics===<br />
Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product.<br />
<br />
===Function===<br />
KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand.<br />
<br />
===Expression===<br />
Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000417262.1|<br />
source = Gencode19|<br />
same = lnc-RP11-480I12.4.1-1:3|<br />
classification = intergenic|<br />
length = 748 nt|<br />
location = chr1+:202780090..202781041|<br />
number = 2|<br />
exons = 202780090..202780498,202780703..202781041|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr1:202780090..202781041&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GACCTGGGCAACCCCAGCCTGGAGGTGCCGGGGCCGGAGCTCCCAGAGGGCTGGGTGCGAGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCCAGGAACCCCCTCCTTACTCTTGGACAACACTCCGCCCCCGCCCGGGCCTCCGTCCCCCAAACCGCCCTCATTTGTGCAGCGCCAGATCCTTCGGACACATCCCTAGGTGTCTCCATCCTCATTCGGTCCATCCAACTCCCAGACCTCACGTCAACCGGCTGCACCCCACTTTCCAGCCTGCGCCCCAGATCTGCAGCCTTCGCCCCTAGATACACCCGCCTGGTGATGAGGCGCTCCTCGCGTTCCTTCCGGGCTCCAGGTGTCCGTGAGCCTCCCTTCCGCCCTGGCCTCCGGTCTCTGCCTTGCTCGTGCTTCTACCACCACCCTTCCCCTCCCAACCCGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCTCAGCTCATCTCTCCAATTCAATGCCATCATCTCTCCTCACCATCTCTCGGTGCCCTGGAATGTTTGCTGTCAGATGTCCCCTGTGAAACCCACAAACGCTTGCGATTTGGCCTCCTTGTTTTATTTTGTGTAGTCCTACAACGTCTTGTTACTACCCCCTATTACAACACTTATAACTCAG</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000553157.1&diff=890610ENST00000553157.12014-10-11T02:19:02Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
KDM5BAS1<br />
<br />
===Characteristics===<br />
Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product.<br />
<br />
===Function===<br />
KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand.<br />
<br />
===Expression===<br />
Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000553157.1|<br />
source = Gencode19|<br />
same = lnc-RP11-480I12.4.1-1:2|<br />
classification = intergenic|<br />
length = 551 nt|<br />
location = chr1+:202780082..202781284|<br />
number = 2|<br />
exons = 202780082..202780498,202781151..202781284|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr1:202780082..202781284&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>AGAGGCCGGACCTGGGCAACCCCAGCCTGGAGGTGCCGGGGCCGGAGCTCCCAGAGGGCTGGGTGCGAGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCCAGGAACCCCCTCCTTACTCTTGGACAACACTCCGCCCCCGCCCGGGCCTCCGTCCCCCAAACCGCCCTCATTTGTGCAGCGCCAGATCCTTCGGACACATCCCTAGGTGTCTCCATCCTCATTCGGTCCATCCAACTCCCAGACCTCACGTCAACCGGCTGCACCCCACTTTCCAGCCTGCGCCCCAGATCTGCAGCCTTCGCCCCTAGATACACCCGCCTGGTGATGAGGCGCTCCTCGCGTTCCTTCCGGCACGTGGCACACGCTCCACAAATATTTGTTGAAAGGGAGGGTAAATGGCCTTGAGTTTCTGTGGCTACCATTGGCTGAGGATGGAGCTTTGGGCTGGACAAAGAAGAATCTGGTTGACCACATGAAGCAGGAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000425295.1&diff=890609ENST00000425295.12014-10-11T02:18:19Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
KDM5BAS1<br />
<br />
===Characteristics===<br />
Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product.<br />
<br />
===Function===<br />
KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand.<br />
<br />
===Expression===<br />
Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000425295.1|<br />
source = Gencode19|<br />
same = lnc-RP11-480I12.4.1-1:4|<br />
classification = intergenic|<br />
length = 634 nt|<br />
location = chr1+:202780090..202781041|<br />
number = 2|<br />
exons = 202780090..202780498,202780817..202781041|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr1:202780090..202781041&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GACCTGGGCAACCCCAGCCTGGAGGTGCCGGGGCCGGAGCTCCCAGAGGGCTGGGTGCGAGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCCAGGAACCCCCTCCTTACTCTTGGACAACACTCCGCCCCCGCCCGGGCCTCCGTCCCCCAAACCGCCCTCATTTGTGCAGCGCCAGATCCTTCGGACACATCCCTAGGTGTCTCCATCCTCATTCGGTCCATCCAACTCCCAGACCTCACGTCAACCGGCTGCACCCCACTTTCCAGCCTGCGCCCCAGATCTGCAGCCTTCGCCCCTAGATACACCCGCCTGGTGATGAGGCGCTCCTCGCGTTCCTTCCGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCTCAGCTCATCTCTCCAATTCAATGCCATCATCTCTCCTCACCATCTCTCGGTGCCCTGGAATGTTTGCTGTCAGATGTCCCCTGTGAAACCCACAAACGCTTGCGATTTGGCCTCCTTGTTTTATTTTGTGTAGTCCTACAACGTCTTGTTACTACCCCCTATTACAACACTTATAACTCAG</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT040039&diff=890608NONHSAT0400392014-10-11T02:17:30Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Dio3os<br />
<br />
===Characteristics===<br />
Antisense and head to head with Dio3 from the Dlk1-Dio3 imprtinted locus [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. A large number of isoforms are transcribed through alternative splicing and start sites some of which overlap Dio3 [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Also overlaps a provisional microRNA miR1247.<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Various DIO3OS isoforms are expressed in a wide range of human tissues including adult testis, adrenal cortex, heart, bladder, uterus, placenta and fetal lung [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Expressed in embryonic and extra-embryonic tissue in mouse. Weakly expressed in several neonatal and adult tissues: brain and liver (adult only), intestine and tougue (neonate only), kidney and lung (expressed in both) [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))]. Analysis in different cell culture lines showed co-expression of DIO3OS transcripts and DIO3 [http://www.ncbi.nlm.nih.gov/pubmed/16935842 (Kester (2006))]. Conversely differentiation of mature brown adipose tissue (BAT) adipocytes from precursor cells showed that Dio3 was only expressed in the proliferating precursors while a specific Dio3os isoform was expressed only in differentiated adipocytes [http://www.ncbi.nlm.nih.gov/pubmed/17510246 (Hernandez (2007))]. Not imprinted in mouse [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))].<br />
<br />
===Conservation===<br />
Aside from the short exon 1, there is poor sequence conservation and no conserved ORFs between mouse and human Dio3os [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))].<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT040039|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 1746 nt|<br />
location = chr14-:102023641..102026759|<br />
number = 2|<br />
exons = 102023641..102025171,102026589..102026759|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr14:102023641..102026759&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CCGCTTGCCTCGCCCAGCGCAGCCCCGGCCGCTGGGCGCACCCGTCCCGTTCGTCCCCGGACGTTGCTCTCTACCCCGGGAACGTCGAGACTTGAGCGCCCGAACTGAGCCACCTTCGCGGACCCCGAGAGCGGCGGCGCGACTCACCGCGGAGGCGCCCGGACGCGTCAAGCCCAGCCCAATAAGAAGCACCTGATCCACACTCTTTCTAGCCCCAGGGATGCTCAGGAAAGCAGCCTTTCTTTAGGGCTGTCATCTGTTCTGGGGATCTGTTGCTGTTTCTTGGGCCCACAGAATACACTCCACACCTCGGGACTCCATAATATTGGACAAGGCTGGAAGGCCCATTTGGCTCCTGCAGCCTCTTATGCAGGTGAGGACAGACCCAAGGTCCAGGCAATGCTGGCCTTTGGAACACAGAACCTGGCTCACTGACTCCCACTCCAGTTGTCTTTTCCCTCTGCCTCTGGAGCAACCCTCTCTCCTCCAGAGCAACCCCTGTCCCTCCTTCCTACCTCTCTCTAGGGCTGCACCCCCAGCTCACCTTAGACCTGGCCCTTCCTACCTGTTGCCCCTACTGTCTTGTCCCATCCCAGTGGTCAGGAGGGAGAGTACTGGCCAAAGGCCCAGCTCCACCTGTGACTTAGGGGAGTGCCAGGCATCACCCAGAGGTCCCGGCCCTCGGGGGCCTGGCAGGCTCTGCTGTGGGGGAAGCAGAGTTAGAACTGGGGCTGCTTCTCCTGTCCCCCAGCCTGGCTGGGCCTCCCCCACCTCCCTTTCTGCCTGCCCTCTTACAACTCCAGCAGGGGGCGGGCAGGGGAAAGAAAAGGAGGGACAAGTTGGATGGGGTCCATTTGGTGTCCAGGAACAACTTGGAGAGAGGCGGGGAGGGGACAGGCAGCAGGGCCCTGGCAGAGCCAGGGGAGGGCTGGCCTTTGGATGGCCTTCTGATCCCAAGCCCATCCTCCTGGGGCAGTCTTCCCTTGAAAGGGAGGGTTTGGTGAACCCTGGTGCGGACCCCCCCGCCGGACCTCACTGCCCCAGTGCGGGGCGTGGTAGGCGGGTTTGCAATGGGTACAGCCTCTCTCTCCATTCCAGTAGAGCAGCTCCCAGGGCCCAGAGAGGCTGTCACTGAGACTTCCCTCTGGGGTGGGGTGGGTTCTGGTGGCCCTGTGTTCCCCTGCAGGAGGACCTCCTGAGGCTTCGGGCAGGAGCTGGTGCACACCTGGAGGAGAGTGCTGGTGAATGGCAGGTGTGTGCCTCAGTGTCCTTGCTGCCAGGGTGTCAGCCCTGCTTCACCACTGGCCGTTTGTCTCTGTCCCCTCCACTGGCCTCTTGAAGCACAGAGACCCTCCGGGTACTTTCCTTCCTCTGGGCTTCCACTCATGCTATTCCCTGCTCCCTTTTTCTACCTGGAGACCCCCATTCCTCCTCCTCCTCTGCTGCCCTCACCTCCACCTGGGCCCTCCCAGCTCCCGGGAGATGGCTGAACCCCACTCCCCACCCGCTAGTCATCCTCTTCAGCGGTCCTCCCAGAGCTGTCCTCAGCATGGCAGCCTCCACAGCCCCTGGGTGTCACCCCCGGTTTCGTGTCTGCCTCGGACTCCAGACCTGCCCCTCCCAGGCTGGCCCAGATGGATCCTCTACAGTGACTAACCCAAACCAGCACCAGGCAGGGACCCAATAAACCTTTGTGAATGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT040032&diff=890607NONHSAT0400322014-10-11T02:16:33Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Dio3os<br />
<br />
===Characteristics===<br />
Antisense and head to head with Dio3 from the Dlk1-Dio3 imprtinted locus [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. A large number of isoforms are transcribed through alternative splicing and start sites some of which overlap Dio3 [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Also overlaps a provisional microRNA miR1247.<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Various DIO3OS isoforms are expressed in a wide range of human tissues including adult testis, adrenal cortex, heart, bladder, uterus, placenta and fetal lung [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))]. Expressed in embryonic and extra-embryonic tissue in mouse. Weakly expressed in several neonatal and adult tissues: brain and liver (adult only), intestine and tougue (neonate only), kidney and lung (expressed in both) [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))]. Analysis in different cell culture lines showed co-expression of DIO3OS transcripts and DIO3 [http://www.ncbi.nlm.nih.gov/pubmed/16935842 (Kester (2006))]. Conversely differentiation of mature brown adipose tissue (BAT) adipocytes from precursor cells showed that Dio3 was only expressed in the proliferating precursors while a specific Dio3os isoform was expressed only in differentiated adipocytes [http://www.ncbi.nlm.nih.gov/pubmed/17510246 (Hernandez (2007))]. Not imprinted in mouse [http://www.ncbi.nlm.nih.gov/pubmed/16309881 (Tierling (2006))].<br />
<br />
===Conservation===<br />
Aside from the short exon 1, there is poor sequence conservation and no conserved ORFs between mouse and human Dio3os [http://www.ncbi.nlm.nih.gov/pubmed/14962667 (Hernandez (2004))].<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT040032|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 3454 nt|<br />
location = chr14-:102018560..102022013|<br />
number = 1|<br />
exons = 102018560..102022013|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr14:102018560..102022013&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>AGTGGATTTCAGGATTCCTCTAAGAAGCTTTGGAATGCCAGAAGATACCACAAGTGAGAAGAAAAAATAAAACAAGAGGAAGGATATACTTCCCATAAGGGGACAAAGTACAGCCGCAGTGTCCTCCGCTTGGGCCATGGAACAGCTGCAGGTTTTGCCCTGATTACCCTGGTGGTAAAGTCTGATTGGCTATGATTCCCGGTGTCCAGAAGATAAACACGGGCGGTGCAGCGGAGCCACACGCATGCCTGTGCATGGCCACGCCAGGTCGGAAACCCAGCCCCTCTGCTTGGGAGGCACGCAGGGCTCTGGCTGAAGCCTGAAGCTTGGGATCCTCAGAGCACAGATGTCCCAGGGTTGTGTGAAGTTAGTGAGACGAGGTGTACGGAGAGAGCTCGGAGAGGAGAGGGAGTCTCGATTGCTGTGGCTGTGGCTCGGAGATGCCTGCAAGAGGTGACGGTGATGTGCGTGGTGGTGTGTTCACTGATGATGCTACACTGCAGGCCCAGGGCTGTGTTGTGGTGGCAGGTGTCCTCCTGGACCGTTTGACCTTTAGGGAGGCCTCCTCCACTCAAGCACTGGTCCTGGAGGGGCTCTGGGCACACAAGGAGTCAGGCATGTTTTTGCCCCCGAGGAGCCCCCCAGCCTGGCAGGGCCCAGGGGCAGGGCAGGGTGGGGCGGGGTGGGATGGGGGTGCTCCAGGAGGTAGCAGGGACACTTGGTAAGTGGGGCCAAATTGGGAGGCATCTCAGGAGGTGGCCATGGGCAGAGGGACAGCCTTCCAGTTCTTTGCCTCTCCCCTTTGAAGCCCGGCGCCTGGCAACAGACCTGTGGTAGCTGCACCTGCCTGGGTAGGAGACTGTGGGCTCTTTTCTCGTAGGGGGACAAGAGTCATTTGCAGGACCTTCTGAGCAGGTGGGGGACAGCGAAGGACAAGAGGAGGCTGTGCCTGTGCGGCTGTGTCCCGGCACAGGTGCCGCTTCATGCCCACGCCACCACATCCTCACTGGGTGGCTTCGGGCAAGTTACCTGAACTCTGCGCCTCCATCTCGTCTTCTGTAAAATGGGTGGCACATCCGAGCCCACCTCCTAGGGAGGGTGTTGTGAGGACAGGTGGGGGCACGTCCGCACAGCCCCTAGAATAGTGCCCAGGGCACCAGAGTGCTCTGTAGGGAAATAGTAGTGGCTGGCACTGAGCCCCCAACATAAGCCAGCACCGTGGGCCAGAGCCACGACTCCTGCTTCTGGGCACTTCACAAGCTATGGCCAGGGGCCACCACCTTTGGCCACTCCTTTCCCACAGAATTCCTACCAGGGCCCTGCCAGGTCAACAAGTCACAGGGCTTCCCCATCACAGAAGCCCAGCTCTGTGACACCTCTTGGTCCCAAGCACGTTCCTATCCCCCATTCATGTGTTTTGTTAGGACCCTTTAGGGTTGCACATGGCAGAAACTTAATCCACACCAACTTCAGCGAAGAAGGAATGTACTGGCTCCAGTCAGTGAAAAGTCCAGGAGGAGCCATGCCTTCAGGCACGGCTGCATCCAGGCACTCAACAGGTGTATCCAGGCACTCAACAGGTGCAGCCAACACCTTGCCCCGCAGGCTGTCAGCTCCTGCCTTCTGCTGCGTCCACGTCACTGTAGGTGGATTTCTCTGCACATGGGTGAGATGGCCCCAGAAGCTCTGGCTCATGGAGTCCTTGTAGCACCTGTCCTGGCCATCCCCAGATGAGAAAGCATCATTTCCCATGGCAGAAATCTGGTGGAAACAGGAGGGAGGGGGTCGGCTCTCTTTGGTCGGATCTGGGTCTCGTGCCCATCTCTGGGAGAGAAAAGTCCCCATTCACAGAAACTGAGCAGATCCTGGATTGGATGGGGAAGGAGAGATGCTGGCAGATACACACACATTCACTGCACTCCCTGCAAGGATAGTGACAATAGTAGAAGCTGCTCTTTCTTGAGAAGTTATGACGTGTGCCAGAAAATTCTACCTTTTAAGGATATAGAGAGGCTTTTATCATCCCCATTTTACAGATGACAAAACTGAGGCTCAGAGAGGTGAAGTGATTTGCCTATGGATGCATAGCTAAGGTCTGACCCCACAACTCACACTCACAAGTTAGCAAGAGGTGTTTCACCAGGGTAGTCTGGGGGCAGAAGGAGCCTGCCTGGTGAGGGAAGGGAGGTGGAGAGGTGGGGAGAGGGGAGGCCAAGAGGAGGGGACACCAGGACCTGGCCTCTGGCTTGCACAATGGGGAGGGAACCCTGGAGAAGAGGAGGTTTATGGGGGAGGCTGCTGAGTTTTTTGGGCACATATGCTAAGTTGGAGGTGCCCATGGTCCTCAGGAGATGTTCGGGATTTGGGGGTCAGAGGCATGAGCCTCGGCATCCTGGGAATCATGGCTGTTTGCTTTGCTTTGGGAATTTCACAGTGGTGGGGGGAAGGCGGCTGCTGACAGGAAGCACTTCCCATTTGGTGGAGAAGGCAGCCAGAACCTGCATGGCAGAAGCTGCGGCCTGGGCCTGTGACAGTGTCTACAACTGTGGCCACAGGTTCAAGGCCCTTGTAGTTGGCAGACACAGGGCCTGAAGTTCTCTGGCCGTTGTTTTAGGGCAAACACCTTGAGAATGGCATTTCCAAGGCCCTTGGGCTGTGCCAGGGCACCAACGCCAGTCGAGGACCACGCCTTTCTGAGGGATGCTTGGAATCTCACAGACAGGGGTTCACATTCCGACTCTGCTTCCTAGAGGCTATGTGGCCTTGGGCGTGTCTGGAACCTCTCTGGGCCACAGTTTGCTTATCTGTGAAAGAGTCATGGTAGCCTCTCCTTATGGGTTTATGGGGAGCTTCGGATATGGAGGGTGGGGCAGCACACAGGGCTCAAGCTGCAGCTCTTAGTTACCTGCTTTTCCTTTGCAGGTGTCCTACGGGCCTGATGGAAAGGTGGCAGGCGAAATGCACCTGGCCTCAGCGTCAGGGGCTGTGAATGCAGTAGCACTTGTAGCTATGAGGTCAGAGTGGACTAGGATGGTCCTTCCACCAAGAAGCCTGGGCCTTCCTGCTCTTCGTTGTCCAGCTGCAGAAACTGATCTCATCCCTCAGGGCTTGGCACAACTGCCCCTTCCTCCTCACATTCCCAAATATACCTACCCCTCCCCAACTCAATCCTCCTCACCAGACTGTGGCTCCAGGATGACAGGGCAGAGTTGGACTCACCTGTGTCTGCCAGGCCAGCTCACCGTGGGGGCAGGTCCCAAGAGGCCTCTGGATTTGGACCAACTTCCAGTGTGACCTTGAACAAGGCCTTCGCCTCCCTCAGCCTCCGTTGCATGAGGGGTTGTGCTGGCACATCTCAGAGCAGGTAGCGCTACCTGGTGAGTTGAGGGCTCTGTCCATCATCTTTGTCACTGTAATGCTGGGTAACAAATAAACACGAAACAATGAGTGCTCG</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-FANK1-3:1&diff=890606Lnc-FANK1-3:12014-10-11T02:15:25Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
CAR10: Chromatin Associated RNA 10<br />
<br />
===Characteristics===<br />
Positioned between 3' ends of of FANK1 (fibronectin) and ADAM12 (ADAM metallopeptidase domain 12) genes, with an overlap of a few hundred base pairs with ADAM12.<br />
<br />
===Function===<br />
Positively regulates gene expression of FANK1 and ADAM12 neighboring genes through modulating the chromatin structure in cis, as siRNA knock-down of the Intergenic10 ncRNA results in reduced expression of both FANK1 and ADAM12 mRNAs, with a significant decrease in the level of active chromatin mark H3K4me2 on FANK1 and ADAM12 promoters<br /> Knock-down of the ncRNA had no effect on the expression of two tested distal genes, UROS and DOCK1.<br /> Note: Despite its overlap with the 3' end of ADAM12, Intergenic 10 is not simply an Adam12 3'UTR, as siRNA knockdown of Adam12 failed to decrease FANK1 expression unlike knockdown of CAR Intergenic 10.<br />
<br />
===Expression===<br />
CAR Intergenic 10, ADAM12 and FANK1 are co-expressed in different tissues, including placenta, brain and a human skin fibroblast (HF) cell line.<br /> CAR Intergenic 10 was most highly expressed in HF cells and very lowly expressed in brain, with placenta in-between.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-FANK1-3:1|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = antisense|<br />
length = 65 nt|<br />
location = chr10+:127703096..127703161|<br />
number = 1|<br />
exons = 127703096..127703161|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr10:127703096..127703161&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>TCCACGCTGTGAAATGTAACCTCCTGTGTGTATTTCCACAATGGAGAATGTTAGGCTTCGTTTCC</dnaseq>|<br />
}}<br />
[[Category:Antisense]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT016928&diff=890605NONHSAT0169282014-10-11T02:14:32Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
CAR10: Chromatin Associated RNA 10<br />
<br />
===Characteristics===<br />
Positioned between 3' ends of of FANK1 (fibronectin) and ADAM12 (ADAM metallopeptidase domain 12) genes, with an overlap of a few hundred base pairs with ADAM12.<br />
<br />
===Function===<br />
Positively regulates gene expression of FANK1 and ADAM12 neighboring genes through modulating the chromatin structure in cis, as siRNA knock-down of the Intergenic10 ncRNA results in reduced expression of both FANK1 and ADAM12 mRNAs, with a significant decrease in the level of active chromatin mark H3K4me2 on FANK1 and ADAM12 promoters.. Knock-down of the ncRNA had no effect on the expression of two tested distal genes, UROS and DOCK1.. Note: Despite its overlap with the 3' end of ADAM12, Intergenic 10 is not simply an Adam12 3'UTR, as siRNA knockdown of Adam12 failed to decrease FANK1 expression unlike knockdown of CAR Intergenic 10. <br />
<br />
===Expression===<br />
CAR Intergenic 10, ADAM12 and FANK1 are co-expressed in different tissues, including placenta, brain and a human skin fibroblast (HF) cell line. . CAR Intergenic 10 was most highly expressed in HF cells and very lowly expressed in brain, with placenta in-between.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT016928|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = sense|<br />
length = 2375 nt|<br />
location = chr10-:127700956..127703336|<br />
number = 1|<br />
exons = 127700956..127703336|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr10:127700956..127703336&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>AATGTGACTAGACACAAAGTAGCCCAGAGGCTACTTTTCTTCCTACAGCTTATTATAGTTGTAGGTTCTATGACCTCACTTCATGGGTTCCAGGCAATTCCGCTGAAAGGTTTGTCTCCTGAAATTTTTTAAGTTTGTTTTCCTGACACATGTAATCAGATGTGTAGCAACCGAGGGAAACGAAGCCTAACATTCTCCATTGTGGAAATACACACAGGAGGTTACACTTCACAGCGTGGATTTTTCCAGCTTACACATGTGGGATGACATCACAGAAACCACAAAAGCAGCAAATTAAACTGTAGGAGAGTCAATACTCCTGACGAGTCTCGGGGGGGGCATTTTTATGCCTTCTTAACTTTATGAGAATTCTCAGGCTGAACTATAGGCCATTGTTCCCAGGCAAATCAATACAGCAATGCATCCTCAAAAAAAAAAAAAAAAAAAAACGGCTAAAACTGTGTCAAAATGTTCTTAAGGAGCCTATGGTCTCCACGGTGCTAAAAAGAGCCTGGTGCTGGGCCGACTGGCAGGGCTGAGCATCCTCCTGCCCCCTCGCCACTGATGTTTACTAAGCACTCTGAGCCAATGAGACCCCCAGCAGCAGAAAGGGCACAAGGTGGCGCCAGGGCAGCAGGGCCAGATCTTTCTCATGCACCTCGACCTCTTGCAGACTTTCTTCGTGAGATGTACTACTCATTTCAAAACTGCTTTGCAGGGCTCCCCTATGTATTCGGGGGGCCCACGGCACACTCAGGCTGGAGATCCTTCCTCACTGCGCTCAAGATGGCCTCAGCCAGACACCAGTTACCCAGCTGAAAGTCACAATCCCTCCCAGAAGTCTCCCAACACTAGTGCTGACCAGAGGTGGGGCTCTCAGGCTAGGAGTTTCACACACAATGACAGGCTGCTGGGGGACATTGCAGGACCCCTTTTCCTCTCCTCTCCATGCTAGAAGCCAGCCCTAGGCAGCTGCAGTTACTCCCTGTGACTCAGCAGCAGGCTGATTCAACACAGCTGCCCACACAAAGCCAGTGGCTAATACATCTGTTTACCTTTCCCTATCACCCAGACACAAGCCCCTTTCCCAGGTCAAACCACAGGCCGATGCATCTCCAGTTTGACAGTCAAATCACTACTTCCATTGCTACTTTAGATCAGCCAAAGTGGTGACTGCTGCAGTGTGTGGCTATCCCTACAAGGCCCACCCAAGGGATGCCCAAAGCCCAACCTTCTCCAGGGCTGCAGCCCAGAGCAACCCCACCAGCCTAAGTCCAGCAGAGGACCTCCCACCCAATGTCTTGTTCTAATTAGAAGGGGAAGTTAGCCACAGAAAATCAACTTATCTATAATTACAAAATTCTCTTGACTCACCTTAAAGTTCCTATTGACATCTACTGCTTTTAAACCTATTTGAAAACTCTGATACTAAAACAAATGACACTCTAAGAAAGTTTGGGAGCCCCATGCTGAGAACCATTTCTGTGCAGTGAGGATGTTTCCAGAAGCTACTTACCTACATGTGAATGTGCCATTTTCTTTCCTTTTGTAGAGAAAATCCCCTTTACTTTTTGGAACAGTAATGGCAGCTTCTAGTACAGCCATTACAGTTTCATATGAGAAAAATTAAGAATAACTATAAAATTGTTAAAATATCCAATAATGGATAATGATGGCCAGAAGATTTAACATACAAAGTAATTCTCAATGTAAAGCTATTCAGCTCTTCCAGGTTGAATGCCCTGTAACCCACCCTGACCTTCCACATCATCTTCAAAAAGCAGTTTCTCTGTTCCCCATGATTCTCCTATAAGGTAACTCTTTAGTCCTCCATTTAGCACATTTTAAATCCTCCAAAGAATAAGTATCATGTGATTATTTTAGCTTTACAAAAAAAAAGTTGAATGGCGTTTTATTTTCATGGCCTATAAGCAGGTACCTTAGTAGGGCAGATATAGGAAAAACAAATTAGAGCAAAACAAATCCTCTACAAATCCAAGGCAGGAAAAGTGGTGGCAGAGTGACTCATTCTCCTGTCCCTCCCATCAGGTCAAATCAGGAGGCTGCAGTGAATGCCTGTTCTTTGAATGTGTAGCAGTTGTTCCTGTAACTCTTTAAAACTTGGCTATAGGCTGTTTAGCACAGTACAGATTAAAGATACAGTTACGTAAACAGCAAAGTAATTTTATAGTGCTTCATCCATTTATCATGCTTTGGTTTGCTAATTTTTTCACATACCTTTTTCTATCACAGTCTGTTGCTTTTGTACACATTTCTCATATTGGGGTTCGACAGGTAAACACAAACTGCTATTTCAGTAGAAAAAGTTATTGTTATGAATATTAAACCCAATAAATTGTATAAAGGTAAATATC</dnaseq>|<br />
}}<br />
[[Category:Sense]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-PRL-6:1&diff=890604Lnc-PRL-6:12014-10-11T02:13:26Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
BX118339<br />
<br />
===Characteristics===<br />
Longest identified isoform is 738bp with 4 exons. Deep sequencing has also identified two shorter isoforms [http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili (2011))]. Some exons overlap multiple SINEs.<br />
<br />
===Function===<br />
Transcript disrupted by a balanced translocation, 46,XY,t(2;6)(p15;p22.3), in a patient with West Syndrome (a form of infant epilepsy). Lack of effect on other nearby genes or presence of mutations in known West Syndrome disease genes leads to possible implication of BX118339 in the clinical phenotype [http://www.ncbi.nlm.nih.gov/pubmed/22245136 (Vandeweyer (2012))].<br />
<br />
===Expression===<br />
Transcript isoform(s) expressed in testis [http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili (2011))] and also reported in fetal brain [http://www.ncbi.nlm.nih.gov/pubmed/22245136 (Vandeweyer (2012))].<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-PRL-6:1|<br />
source = LNCipedia2.1|<br />
same = NONHSAT108038|<br />
classification = intergenic|<br />
length = 507 nt|<br />
location = chr6-:21486298..21502716|<br />
number = 2|<br />
exons = 21486298..21486760,21502673..21502716|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr6:21486298..21502716&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GAAGGCTCCTGGTCTACCACAGGAGGTGATCTCTAGTGAAGAAGGTTCTCTTACAAGACCACCAACATTCTTCAAACATCAGTGAAATAAAACAGGAGGAGGGTTTCGAGCTCTGGATCCTCAGCCTGGAAATGTCACAATTTAATCCCAAAGGTTTGCTGTGAAGTTGTAAGCATGACAGTGTGAAACTCGACAGATTATTCTTGAATTCTTTGTTTGTTTTCGTTGTGACCCGACTCTCATAAAATTTATGTTTTCTTCCAAACCCCCAGGGTGTGTGGTCATATGACTTAAATAGAGAAAAACATTGTCAAAACAGTATTGAGGAGTTATCACTTTTACATTGTTTTAATTAAAGAAAAAGCCTTTCTATCCAGGTCTAATACCATCATTTTTATGGGCATGTTAAAGTATCTAATCTAATACTGTAGTTAGTAGTAGTATTTAGTATTTTTAGTATTATTATAGTTTTATCTGTATCTTAAAGAAAAAGTCAATAAATATGAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-PRL-6:2&diff=890603Lnc-PRL-6:22014-10-11T02:12:31Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
BX118339<br />
<br />
===Characteristics===<br />
Longest identified isoform is 738bp with 4 exons. Deep sequencing has also identified two shorter isoforms [http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili (2011))]. Some exons overlap multiple SINEs<br />
<br />
===Function===<br />
Transcript disrupted by a balanced translocation, 46,XY,t(2;6)(p15;p22.3), in a patient with West Syndrome (a form of infant epilepsy). Lack of effect on other nearby genes or presence of mutations in known West Syndrome disease genes leads to possible implication of BX118339 in the clinical phenotype [http://www.ncbi.nlm.nih.gov/pubmed/22245136 (Vandeweyer (2012))].<br />
<br />
===Expression===<br />
Transcript isoform(s) expressed in testis [http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili (2011))] and also reported in fetal brain [http://www.ncbi.nlm.nih.gov/pubmed/22245136 (Vandeweyer (2012))].<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-PRL-6:2|<br />
source = LNCipedia2.1|<br />
same = NONHSAT108039|<br />
classification = intergenic|<br />
length = 280 nt|<br />
location = chr6-:21486540..21490497|<br />
number = 2|<br />
exons = 21486540..21486760,21490439..21490497|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr6:21486540..21490497&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>TGAATATCAGCACGGATCACTGCAAAGAAGTTGGAACTCATCTCACATGAACTTCTCAGGTTCTCTTACAAGACCACCAACATTCTTCAAACATCAGTGAAATAAAACAGGAGGAGGGTTTCGAGCTCTGGATCCTCAGCCTGGAAATGTCACAATTTAATCCCAAAGGTTTGCTGTGAAGTTGTAAGCATGACAGTGTGAAACTCGACAGATTATTCTTGAATTCTTTGTTTGTTTTCGTTGTGACCCGACTCTCATAAAATTTATGTTTTCTTCCAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT017674&diff=890602NONHSAT0176742014-10-11T02:11:31Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Beta-globin transcripts<br />
<br />
===Characteristics===<br />
>1 kb, intergenic RNAs transcribed from the beta-globin locus.<br />
<br />
===Function===<br />
Intergenic transcripts (or their transcription) are believed to participate in the developmental switch of beta-globin cluster genes, with proposed roles in chromatin remodeling and long-range cis-activation. RNAs may be processed by RNAi machinery.<br />
<br />
===Expression===<br />
Dynamically expressed during erythroid cell development.<br />Nuclear localised.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT017674|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 410 nt|<br />
location = chr11-:5301819..5302228|<br />
number = 1|<br />
exons = 5301819..5302228|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr11:5301819..5302228&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>TTTTACAAGCTCAGCTCCCTCTATCCCTTCCAGCATCCTCATCTCTGATTAAATAAGCTTCAGTTTTTCCTTAGTTCCTGTTACATTTCTGTGTGTCTCCATTAGTGACCTCCCATAGTCCAAGCATGAGCAGTTCTGGCCAGGCCCCTGTCGGGGTCAGTGCCCCACCCCCGCCTTCTGGTTCCGTGTAACCTTCTAAGCAAACCTTCTGGCTCAAGCACAGCAATGCTGAGTCATGATGAGTCATGCTGAGGCTTAGGGTGTGTGCCCAGATGTTCTCAGCCTAGAGTGATGACTCCTATCTGGGTCCCCAGCAGGATGCTTACAGGGCAGATGGCAAAAAAAAGGAGAAGCTGACCACCTGACTAAAACTCCACCTCAAACGGCATCATAAAGAAAATGGATGCCTG</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT017675&diff=890601NONHSAT0176752014-10-11T02:10:45Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Beta-globin transcripts<br />
<br />
===Characteristics===<br />
>1 kb, intergenic RNAs transcribed from the beta-globin locus.<br />
<br />
===Function===<br />
Intergenic transcripts (or their transcription) are believed to participate in the developmental switch of beta-globin cluster genes, with proposed roles in chromatin remodeling and long-range cis-activation. RNAs may be processed by RNAi machinery.<br />
<br />
===Expression===<br />
Dynamically expressed during erythroid cell development.<br />Nuclear localised.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT017675|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 1188 nt|<br />
location = chr11-:5304740..5305929|<br />
number = 1|<br />
exons = 5304740..5305929|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr11:5304740..5305929&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GAGTAGAGGGCAGACATGGGAAAGGTGGGGGAGGCACAGCATAGCAGCATTTTTCATTCTACTACTACATGGGACTGCTCCCCTATACCCCCAGCTAGGGGCAAGTGCCTTGACTCCTATGTTTTCAGGATCATCATCTATAAAGTAAGAGTAATAATTGTGTCTATCTCATAGGGTTATTATGAGGATCAAAGGAGATGCACACTCTCTGGACCAGTGGCCTAACAGTTCAGAACAGAGCTATGGGCTTCCTATGTATGGGTCAGTGGTCTCAATGTAGCAGGCAAGTTCCAGAAGATGGCATCAACCACTGTTAGAGATATACTGCCAGTCTCAGAGCCTGATGTTAATTTAGCAATGGGCTGGGACCCCCCTCCAGTAGAACCTTCTAACCAGCTGCTGCAGTCAAAGTCGAATGCAGCTGGTTAGACTTTTTTTAATGAAAGCTTAGCTTTCATTAAAGATTAAGCTCCTAAGCAGGGCACAGATGAAATTGTCTAACAGCAACTTTGCCATCTAAAAAAATCTGACTTCACTGGAAACATGGAAGCCCAAGGTTCTGAACATGAGAAATTTTTAGGAATCTGCACAGGAGTTGAGAGGGAAACAAGATGGTGAAGGGACTAGAAACCACATGAGAGACACGAGGAAATAGTGTAGATTTAGGCTGGAGGTAAATGAAAGAGAAGTGGGAATTAATACTTACTGAAATCTTTCTATATGTCAGGTGCCATTTTATGATATTTAATAATCTCATTACATATGGTAATTCTGTGAGATATGTATTATTGAACATACTATAATTAATACTAATGATAAGTAACACCTCTTGAGTACTTAGTATATGCTAGAATCAAATTTAAGTTTATCATATGAGGCCGGGCACGGTGGCTCATATATGGGATTACATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAATTGGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGTGAAACCCCTTCTCTACTAAAAAATACAAAAAATCAGCCAGGTGTGGTGGCACGCGTCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTAAGATTGCACCACTGCACTCCAGCCTAGGTTCCCGGCTGAGACTCCATCAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT017676&diff=890600NONHSAT0176762014-10-11T02:09:46Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Beta-globin transcripts<br />
<br />
===Characteristics===<br />
>1 kb, intergenic RNAs transcribed from the beta-globin locus.<br />
<br />
===Function===<br />
Intergenic transcripts (or their transcription) are believed to participate in the developmental switch of beta-globin cluster genes, with proposed roles in chromatin remodeling and long-range cis-activation. RNAs may be processed by RNAi machinery.<br />
<br />
===Expression===<br />
Dynamically expressed during erythroid cell development.<br />Nuclear localised.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT017676|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 1047 nt|<br />
location = chr11-:5304905..5305952|<br />
number = 3|<br />
exons = 5304905..5305301,5305319..5305449,5305462..5305952|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr11:5304905..5305952&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>AGGAGCCAGGAGAGATAGACCATGAGTAGAGGGCAGACATGGGAAAGGTGGGGGAGGCACAGCATAGCAGCATTTTTCATTCTACTACTACATGGGACTGCTCCCCTATACCCCCAGCTAGGGGCAAGTGCCTTGACTCCTATGTTTTCAGGATCATCATCTATAAAGTAAGAGTAATAATTGTGTCTATCTCATAAGGGTTATTATGAGGATCAAAGGAGATGCACACTCTCTGGACCAGTGGCCTAACAGTTCAGGACAGAGCTATGGGCTTCCTATGTATGGGTCAGTGGTCTCAATGTAGCAGGCAAGTTCCAGAAGATAGCATCAACCACTGTTAGAGATATACTGCCAGTCTCAGAGCCTGATGTTAATTTACAATGGGCTGGGACCTCCTCCATAAACCTCTAACCACTGCTGCATCAAATCGAATGCAGCTGGTAGACTTTTTTTAATGAAAGCTTACTTCATTAAAGATTAACCCAACAGGCACAATGAAATTGTCTAACACAACTTTGCCATCTAAAAAAATCTGACTTCACTGGAAAATGGAAGCCCAAGGTTCTGAAATGAGAAATTTTTAGGAATTGCACAGGAGTTGAGGGGAAACAAGTGTGAGGGATAGAACCACTGGAGACACGAGGAAATAGTGTAGATTTAGGCTGGAGGTAAATGAAAGAGAAGTGGGAATTAATACTTACTGAAATCTTTCTATATGTCAGGTGCCATTTTATGATATTTAATAATCTCATTACATATGGTAATTCTGTGAGATATGTATTATTGAACATACTATAATTAATACTAATGATAAGTAACACCTCTTGAGTACTTAGTATATGCTAGAATCAAATTTAAGTTTATCATATGAGGCCGGGCACGGTGGCTCATATATGGGATTACATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAATTGGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGTGAAACCCCTTCTCTACTAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-RNF214-1:2&diff=890599Lnc-RNF214-1:22014-10-11T02:08:20Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
BACE1 antisense RNA<br />
<br />
===Characteristics===<br />
~2 kb; two splice variants were identified for human and mouse BACE1-AS. Transcribed from an intron of the beta-secretase-1 (BACE1) gene in antisense direction it also completely overlapps exon 6 of BACE-1 [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))]. <br />
<br />
===Function===<br />
BACE1AS expression is elevated in Alzheimers disease [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))]. It was shown to regulate BACE1 mRNA and protein expression in vitro and in vivo ie: over-expression, shRNA and siRNA knockdown of BACE1AS affected BACE1 expression, influencing amyloid-beta 1-42 levels [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))]. It was proposed that BACE1-AS and BACE1 form an RNA duplex and this increases the stability of BACE1 [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))]. More recently, it was suggested that BACE1AS may prevent translational repression of BACE1 mRNA by miR-485-5p via masking the binding site for the microRNA. Supporting this hypothesis, BACE1AS over-expression prevented miRNA-induced suppression [http://www.ncbi.nlm.nih.gov/pubmed/20507594 (Faghihi (2010))]. Expression of BACE1-AS as well as miR-485-5p are dysregulated in RNA samples from Alzheimer's disease subjects compared to control individuals [http://www.ncbi.nlm.nih.gov/pubmed/20507594 (Faghihi (2010))]. BACE1-AS may also be involved in sporadic inclusion-body myositis (s-IBM), whose muscle-fiber phenotype shares molecular similarities with Alzheimer-disease brain (including increased BACE1 protein). BACE1-AS and BACE1 transcripts are significantly increased in s-IBM, and experimental induction of endoplasmic reticulum (ER) stress increased both BACE1-AS and BACE1 transcripts. These results suggest that ER stress and increased BACE1-AS expression may be involved in s-IBM [http://www.ncbi.nlm.nih.gov/pubmed/20236612 (Nogalska (2010))].<br />
<br />
===Expression===<br />
BACE1 and BACE1AS are co-expressed in a wide range of tissues and cell lines in mice and humans. BACE1 mRNA expression levels are higher than BACE1-AS levels across all tissues examined, except in Alzheimer's disease (AD) where, in contrast, BACE1-AS is expressed at a higher level in brain. Bace1 and Bace1-AS transcripts are also observed in various regions of the mouse brain ([http://www.ncbi.nlm.nih.gov/pubmed/18587408 Faghihi (2008)], [http://www.ncbi.nlm.nih.gov/pubmed/20507594 Faghihi (2010)]). Several cell stressors, such as high temperature, serum starvation, amyloid-beta 1-42, H2O2 and high glucose, specifically increase BACE1-AS RNA and BACE1 protein levels [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))]. Showed increased expression in sporadic inclusion-body myositis (s-IBM) muscle fibers (possibly caused by endoplasmic reticulum stress). Nevertheless, unlike in AD and AD-transgenic mouse brain samples in which BACE1-AS transcript was increased more than the sense BACE1 transcript , in s-IBM muscle biopsies the reversed was found [http://www.ncbi.nlm.nih.gov/pubmed/20236612 (Nogalska (2010))]. Mouse RNA stability was very close to median for lncRNAs, with a half-life 3.6 hr in N2A (neuroblastoma) cells [http://www.ncbi.nlm.nih.gov/pubmed/22406755 (Clark (2012))]. <br />
<br />
===Conservation===<br />
BACE1-AS transcript has been identified in mouse and humans, with a conserved association with BACE1 across species [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))].<br />
<br />
===Misc===<br />
Mouse AK078885 and human CB960709 full-length clones are unspliced and are ~1.2kb- and 798b-long, but two spliced variants were extended by RACE by Faghini et al., 2008.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-RNF214-1:2|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intergenic|<br />
length = 807 nt|<br />
location = chr11+:117162061..117162857|<br />
number = 1|<br />
exons = 117162061..117162857|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr11:117162061..117162857&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GGCTCACCGCAACCTCCACCGTCCTGAGTTAAAGTGATTCTCCTGTCTCAGCCCCCTGAGTAGCTAGGATTACAGGCGTGCGCCACCACACCCAGCTAATTTTTGTACTTTTAGTAGAGATGGGATTTCACCCTGTTGGTCAGGCTGGTCTTGAACTCCTGACCTAGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCTAGGGGAAGAGTGCTTTAAGAGCTCTGAGTAGAAGGGTCTAAGTGCAGACATCTTGGCTGTTGCTGAAGAATGTGACTCTCACCGCCTCCCTCTGACACTGTACCATCTCTTTTACCCCCATCCTTAGTCCACTCACGGAGGAGGCTGCCTTGATGGATTTGACTACAGCTTCAAACACTTTCTTGGGCAAACGAAGGTTGGTGGTGCCACTGTCCACAATGCTCTTGTCATAGTTGTACTAAGAGGGAAAAGAGAGAGTTAAAAGAGTCAAAAGGTTTTTGATGCTGGGCTCTGGGCAGTAGGGGGTTACTGCTGGGGCCCCAGCTGGGTTGGCATCTTGGCTTTGGCACCTCCTAAGTGTACCTGCTTGGACAAGTTAACCTCTGTGCCTCAGTTCCTTCATCTCTAAAGTGAGGATAAAAATAGCACCTACCTCAAAGGGTTATTGTAAGGATTAAATAAATCAGCAATGTAAAGCACTTAGAATCGTGCCCAGCAGAGAGAAGGCACTTGGTAAATGTTTATTCTTGTTAATCTTGGGTGGGCAGGTAGTCTCCAAACTTGAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT024403&diff=890598NONHSAT0244032014-10-11T02:06:53Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
BACE1 antisense RNA<br />
<br />
===Characteristics===<br />
~2 kb; two splice variants were identified for human and mouse BACE1-AS. Transcribed from an intron of the beta-secretase-1 (BACE1) gene in antisense direction it also completely overlapps exon 6 of BACE-1 [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))].<br />
<br />
===Function===<br />
BACE1AS expression is elevated in Alzheimers disease [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))]. It was shown to regulate BACE1 mRNA and protein expression in vitro and in vivo ie: over-expression, shRNA and siRNA knockdown of BACE1AS affected BACE1 expression, influencing amyloid-beta 1-42 levels [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))]. It was proposed that BACE1-AS and BACE1 form an RNA duplex and this increases the stability of BACE1 [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))]. More recently, it was suggested that BACE1AS may prevent translational repression of BACE1 mRNA by miR-485-5p via masking the binding site for the microRNA. Supporting this hypothesis, BACE1AS over-expression prevented miRNA-induced suppression [http://www.ncbi.nlm.nih.gov/pubmed/20507594 (Faghihi (2010))]. Expression of BACE1-AS as well as miR-485-5p are dysregulated in RNA samples from Alzheimer's disease subjects compared to control individuals [http://www.ncbi.nlm.nih.gov/pubmed/20507594 (Faghihi (2010))]. BACE1-AS may also be involved in sporadic inclusion-body myositis (s-IBM), whose muscle-fiber phenotype shares molecular similarities with Alzheimer-disease brain (including increased BACE1 protein). BACE1-AS and BACE1 transcripts are significantly increased in s-IBM, and experimental induction of endoplasmic reticulum (ER) stress increased both BACE1-AS and BACE1 transcripts. These results suggest that ER stress and increased BACE1-AS expression may be involved in s-IBM [http://www.ncbi.nlm.nih.gov/pubmed/20236612 (Nogalska (2010))].<br />
<br />
===Expression===<br />
BACE1 and BACE1AS are co-expressed in a wide range of tissues and cell lines in mice and humans. BACE1 mRNA expression levels are higher than BACE1-AS levels across all tissues examined, except in Alzheimer's disease (AD) where, in contrast, BACE1-AS is expressed at a higher level in brain. Bace1 and Bace1-AS transcripts are also observed in various regions of the mouse brain ([http://www.ncbi.nlm.nih.gov/pubmed/18587408 Faghihi (2008)], [http://www.ncbi.nlm.nih.gov/pubmed/20507594 Faghihi (2010)]). Several cell stressors, such as high temperature, serum starvation, amyloid-beta 1-42, H2O2 and high glucose, specifically increase BACE1-AS RNA and BACE1 protein levels [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))]. Showed increased expression in sporadic inclusion-body myositis (s-IBM) muscle fibers (possibly caused by endoplasmic reticulum stress). Nevertheless, unlike in AD and AD-transgenic mouse brain samples in which BACE1-AS transcript was increased more than the sense BACE1 transcript , in s-IBM muscle biopsies the reversed was found [http://www.ncbi.nlm.nih.gov/pubmed/20236612 (Nogalska (2010))]. Mouse RNA stability was very close to median for lncRNAs, with a half-life 3.6 hr in N2A (neuroblastoma) cells [http://www.ncbi.nlm.nih.gov/pubmed/22406755 (Clark (2012))].<br />
<br />
===Conservation===<br />
BACE1-AS transcript has been identified in mouse and humans, with a conserved association with BACE1 across species [http://www.ncbi.nlm.nih.gov/pubmed/18587408 (Faghihi (2008))].<br />
<br />
===Misc===<br />
Mouse AK078885 and human CB960709 full-length clones are unspliced and are ~1.2kb- and 798b-long, but two spliced variants were extended by RACE by Faghini et al., 2008.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT024403|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 798 nt|<br />
location = chr11+:117162062..117162865|<br />
number = 1|<br />
exons = 117162062..117162865|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr11:117162062..117162865&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>TCTAGCGAGGTGACAGCGTAGAACCAGTACAGGCGTGCGCCACCACACCCAGCTAATTTTTGTACTTTTAGTAGAGATGGGATTTCACCCTGTTGGTCAGGCTGGTCTTGAACTCCTGACCTAGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGCTAGGGGAAGAGTGTTTTAAGAGCTCTGAGTAGAAGGGTCTAAGTGCAGACATCTTGGCTGTTGCTGAAGAATGTGACTCTCACCGCCTCCCTCTGACACTGTACCATCTCTTTTACCCCCATCCTTAGTCCACTCACGGAGGAGGCTGCCTTGATGGATTTGACTGCAGCTTCAAACACTTTCTTGGGCAAACGAAGGTTGGTGGTGCCACTGTCCACAATGCTCTTGTCATAGTTGTACTAAGAGGGAAAAGAGAGAGTTAAAAGAGTCAAAAGGTTTTTGATGGTGGGCTCTGGGCAGTAGGGGGTTACTGCTGGGGCCCCAGCTGGGTTGGCATCTTGGCTTTGGCACCTCCTAAGTGTACCTGCTTGGACAAGTTAACCTCTGTGCCTCAGTTCCTTCATCTCTAAAGTGAGGATAAAAATAGCACCTACCTCAAAGGGTTATTGTAAGGATTAAATAAATCAGCAATGGAAAAGCACCTTATAAATCGTGCCCCGCCAGAAGAGAAAGGGCACTTTGGGAAAAATGGTTTTAATTCCCTTGTTTAAATTCTTTGGGGGTGGGGGGCCAAGGTTAAGTTTCTTCCCCAAAAACCTTTGGAAAAAAATT</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-C9orf53-2:1&diff=890597Lnc-C9orf53-2:12014-10-11T02:04:28Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
ANRIL: Antisense noncoding RNA in the INK4 locus;. CDKN2B-AS1: CDKN2B antisense RNA 1;. P15AS: P15 antisense RNA<br />
<br />
===Characteristics===<br />
Present in multiple splicing isoforms [http://www.ncbi.nlm.nih.gov/pubmed/19888323 (Folkersen (2009))] (such as the CDK2BAS RefSeq sequence NR_003529.3 of ~3.9kb). Also detected as an unspliced transcript of 34.8 kb [http://www.ncbi.nlm.nih.gov/pubmed/18185590 (Yu (2008))], specified as p15AS, but which seems to correspond to an isoform with the first intron of CDK2BAS retained. Antisense to the tumor suppressor gene p15/CDKN2A. [http://www.ncbi.nlm.nih.gov/pubmed/18185590 (Yu (2008))]. Traverses a noncoding region centromeric to CDKN2A, a region containing the INK4b/ARF/INK4a locus and implicated in a range of complex diseases including cancer (such as melanoma-neural system tumor syndrome), type 2 diabetes, periodontitis and coronary heart disease (see extensive reference list in Literature below, and [http://www.ncbi.nlm.nih.gov/pubmed/20716961 Popov (2010)] for a review). Transcript found to be quite unstable with a half-life >4 hr in human Hela cells [http://www.ncbi.nlm.nih.gov/pubmed/22369889 (Tani (2012))].<br />
<br />
===Function===<br />
In vitro over-expression of p15as/ANRIL RNA was originally demonstrated to induce epigenetic silencing of p15 gene expression [http://www.ncbi.nlm.nih.gov/pubmed/18185590 (Yu (2008))]. Recently, ANRIL RNA was found to interact and regulate chromobox 7 (CBX7), a component of the Polycomb Repressor Complex 1 (PRC1), which methylates histone H3 lysine 27 to promote epigenetic silencing, and is also up-regulated in prostate cancer. Interaction occurs with a conserved chromodomain of CBX7 and is essential for the ability of PRC1 to repress the INK4b/ARF/INK4a locus and control cell senescence. [http://www.ncbi.nlm.nih.gov/pubmed/20541999 (Yap (2010))].<br />
<br />
===Expression===<br />
Expressed in tissues and cell types affected by atherosclerosis. Increased levels of ANRIL are found in patients carrying the atherosclerosis risk haplotype expression, including in peripheral blood mononuclear cells, whole blood and atherosclerotic plaque tissue, and the levels were directly correlated with the severity of atherosclerosis [http://www.ncbi.nlm.nih.gov/pubmed/20056914 (Holdt (2010))]. Up-regulated in prostate cancer [http://www.ncbi.nlm.nih.gov/pubmed/20541999 (Yap (2010))].<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-C9orf53-2:1|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intergenic|<br />
length = 503 nt|<br />
location = chr9+:21994789..22029563|<br />
number = ,|<br />
exons = ,|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr9:21994789..22029563&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>AGCTACATCCGTCACCTGACACGGCCCTACCAGGAACAGCCGCGCTCCCGCGGATTCTGGTGCTGCTCGCGTCCCCGCTCCCCTATTCCCCTTATTTTATTCCTGGCTCCCCTCGTCGAAAGTCTTCCATTCTTCAAACTAGATTATTTAAAAATGAAAAAGGAAGAAAGGAAAGCGAGGTCATCTCATTGCTCTATCCGCCAATCAGGAGGCTGAATGTCAGTTTTGAACTAAAAGCCGCTCCGCTCCTCTTCTAGATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAGGACTATTTGCCACAACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAAGGTGTGG</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT130421&diff=890596NONHSAT1304212014-10-11T02:03:12Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
ANRIL: Antisense noncoding RNA in the INK4 locus;. CDKN2B-AS1: CDKN2B antisense RNA 1;. P15AS: P15 antisense RNA<br />
<br />
===Characteristics===<br />
Present in multiple splicing isoforms [http://www.ncbi.nlm.nih.gov/pubmed/19888323 (Folkersen (2009))] (such as the CDK2BAS RefSeq sequence NR_003529.3 of ~3.9kb). Also detected as an unspliced transcript of 34.8 kb [http://www.ncbi.nlm.nih.gov/pubmed/18185590 (Yu (2008))], specified as p15AS, but which seems to correspond to an isoform with the first intron of CDK2BAS retained. Antisense to the tumor suppressor gene p15/CDKN2A. [http://www.ncbi.nlm.nih.gov/pubmed/18185590 (Yu (2008))]. Traverses a noncoding region centromeric to CDKN2A, a region containing the INK4b/ARF/INK4a locus and implicated in a range of complex diseases including cancer (such as melanoma-neural system tumor syndrome), type 2 diabetes, periodontitis and coronary heart disease (see extensive reference list in Literature below, and [http://www.ncbi.nlm.nih.gov/pubmed/20716961 Popov (2010)] for a review). Transcript found to be quite unstable with a half-life >4 hr in human Hela cells [http://www.ncbi.nlm.nih.gov/pubmed/22369889 (Tani (2012))].<br />
<br />
===Function===<br />
In vitro over-expression of p15as/ANRIL RNA was originally demonstrated to induce epigenetic silencing of p15 gene expression [http://www.ncbi.nlm.nih.gov/pubmed/18185590 (Yu (2008))]. Recently, ANRIL RNA was found to interact and regulate chromobox 7 (CBX7), a component of the Polycomb Repressor Complex 1 (PRC1), which methylates histone H3 lysine 27 to promote epigenetic silencing, and is also up-regulated in prostate cancer. Interaction occurs with a conserved chromodomain of CBX7 and is essential for the ability of PRC1 to repress the INK4b/ARF/INK4a locus and control cell senescence. [http://www.ncbi.nlm.nih.gov/pubmed/20541999 (Yap (2010))]<br />
<br />
===Expression===<br />
Expressed in tissues and cell types affected by atherosclerosis. Increased levels of ANRIL are found in patients carrying the atherosclerosis risk haplotype expression, including in peripheral blood mononuclear cells, whole blood and atherosclerotic plaque tissue, and the levels were directly correlated with the severity of atherosclerosis [http://www.ncbi.nlm.nih.gov/pubmed/20056914 (Holdt (2010))]. Up-regulated in prostate cancer [http://www.ncbi.nlm.nih.gov/pubmed/20541999 (Yap (2010))].<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT130421|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 3857 nt|<br />
location = chr9+:21994790..22121096|<br />
number = 19|<br />
exons = 21994790..21995160,22029432..22029593,22032673..22032985,22046316..22046448,22046750..22046899,22049105..22049227,22056251..22056386,22058358..22059053,22061952..22062025,22063943..22064017,22065661..22065756,22066234..22066352,22096371..22096513,22097257..22097363,22112319..22112394,22113665..22113798,22118643..22118766,22120199..22120409,22120503..22121096|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr9:21994790..22121096&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>AGCTACATCCGTCACCTGACACGGCCCTACCAGGAACAGCCGCGCTCCCGCGGATTCTGGTGCTGCTCGCGTCCCCGCTCCCCTATTCCCCTTATTTTATTCCTGGCTCCCCTCGTCGAAAGTCTTCCATTCTTCAAACTAGATTATTTAAAAATGAAAAAGGAAGAAAGGAAAGCGAGGTCATCTCATTGCTCTATCCGCCAATCAGGAGGCTGAATGTCAGTTTTGAACTAAAAGCCGCTCCGCTCCTCTTCTAGATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAGGACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAAAATTAAAAACACTGGGCATGTGGAAATAATATTCATGCTTTAAATTGTCTTTTCTCTTCACTACACCAGGGGTCCCCAACCCCTAGGCCACAGACTGTGGCCCTAGTGTAGTGAATAGAAAAGACAATTTAAAGCGTGAATATTATTTCCTCATGCCCAGTGTTTTTAATTTTGTACTGGTCTGTGGCTTGTTAGAAACCAGGCTGCACAGCAGAAGGTGGGCAGCAGATATTGAGAAACCACAGAAAGAGAGAAGTTAAATAATTTTCCTGTCAAAGACCACATCAATGATGAAGCCAGAATTTGAGCTCATGTACTTAACCACTGGACTACCTGCCTGCCCTGTCGAGGAACAGCTAAGTGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAGGGTTCAAGCATCACTGTTAGGTGTGCTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGGAGATCTATTTGGAATGTATCTAACTCCAAAGAAACCATCAGAGGTAACAGTAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTCGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGACACCACACCCGGCGGATAGAGAGAATTTTGACAGTCTCTCCAATGAACGCCTTCACTGATATCCAAAGCATGAAGGACACACCAGGGAAAAACATAGACCTAACACAGGACAAATGGAATTATTAGAAACATTTTCTAGCAGAAGAACACTATTCTGTTGCCATTTGAATCTTTGCTTCTTTCTAGGTTTGACAATGAGCCTATCATATAAGCCCAAATGTAAACAGAAAGAGGTTGAATCAGTCACGATAAGCCCAATTATGCTGTGGTAACAAACAACCTCAAAATCTCATTGGCTTAAAATATACAGAATTATTCTTACTCATGGCACATATCCATCTATCATCTGCAGGGGATCTGCTCACTGAAGTCACTTAGGAACTTGGACTGATGGAACGGCCACTTTTTGGTCACTATATGTATTAATCTGTTTTAATCCTGCTGATAAAGACCCAAAATTGGGAACAAAAAGAAGTTTAACTAGACTTACAGTTCCGCATGGCTGAGGAGGCCTCAGAATCATGGTGGGAGGCGAAAGGCACTTCTTACATGGTGGCAGCAAGAGAAAAATGAGGAAGAAGCAAAAGCGGAAACCTCTGATAAACCCATCAGATCTTATGAGACTTATTCCACTATCAAGAGAATAGCATGGGAAAGACTGGCTCCCATAATTTACCTCCCTCTGGGTCCCTCCCTCAACATGTGGGAATTCTGGGAGAAACAATTCAAGATATGACACATTCATAATTTAAACAGAAGCCTACGAAGAACTCATAAATTAAAAGAAGATAATCTTTTCACAAGGTGATGGAGGCTTTTTATTTTGCCACAAAACCACTGGTGACGTTGCCTGTGGCCACCTTGGAGAAGACACTGGAGGCCTGGGACATGGAGACTGCTTTTCTGCAGAAACCACATCCCTTGGAGTAATGAGCTACACCTACCTCAATTATTCAGTGCAGTACAACACTCCAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGTATTGGCATGATTACAGCTCACTGCAACCTTGAACTCCCAGGCTCAAACCTGAGCAGCTGGGACTACAGATGCACCACCATGCATGGTACCAGAGATATAATAATGAGAAACAGACATGCTCCCTCCCCTCATTGAGGTTACAGCTTAGTGTGGAGACACACAGATGCCTAACGCACTATGGTATGGAAGGTGCTATGGACACAGTGCTCAAATCCATGATCTACATAGGTGGAGAACTTCAGTAGAGGAAGTGGCAGGAATTTGGGAATGAGGAGCACAGTGATTAAACTGGGGCCATTCATATGAGAGTTTAAGAACTCAGACCAGTGACTTAGATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTGGATCTTAACATAGACGTAAGATCAAATGCAATAGCATGTCAAACAATGTGTAACTCCAGTTATACAAACATTACTGTATCTCATTGGGGATACGAAGCTCTACACACTTGAAGATGGTGAAGGAATATAAAAATCTATGTCTCACAGTCCAGACTTGGAGTACAAGTAATAAGAAGAATAAAACTTAATCCCTTAAGTAGATTCACCATAAGTTAGCTCAGAGCAATTCCAGTGCAAGTATGGTCTGTGATCCAGTAGTATCTTACAGACAGCAAGTTGAACATTGTGGGATGCATGAGCTATTGAGGCCTTTGCAGCTTTCTGCTACATGGAGGCTAGGGCCAGAGTCAAGATTTATGCTTTGCAGCACACTGGTCAGCTGTTTTTGCAAATCAGATTAAATGATTTTTAAATGAGGCTGAGAGCATGGGAGATACTAATGTGTGTTTCCTTGTGAGCTACTGCATAAGTTAGGAAATTGAAATACAGAAAGATGAAAAGTGATTTGCCCAAGCATATAGATCAAAGCTGTGGCAGAACCAGGACTGGAACCTATATCTCTCTACTAATGGTTTTTTTAAAAAAATAACCTTGTTTCAAAAATATTAAAAAGTCACAAGAAAGGTAAACATGTGGATAAACAAAATGAAGAAAATAAAAATTATCCAGTAATAACATATTGGCATATGTCTTTCTGGTATATTTTCCTGTGTTGTCATCATTATCATCTCCATCATCATTATATCCATCATTATCATCATCATCATCATCATCATCATCATTATCATCACCATAGTGAACATGTAATGCTTACCTAGTGCCAGATGCTGTCTAGGCATTTTACATGTGTTACTGGTAACTCATGTAATCCTCATAACAACCTTATAAGGTGGTTGCTATTATCCCCATGTTACATATGAAGAGACAGAAGCATAAAGAAGTTGCACCGCTGGTAATTGGCTGGGATTTGAACTTAAGCAGTCTAACCTTAGAGTAATGATTTTAACAACTATGCTATATACATACAAATTTACAAAATAAAACTGGGCTCAGACAATAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-NDST1-1:2&diff=890595Lnc-NDST1-1:22014-10-11T02:00:55Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Alpha 250/ Alpha 280<br />
<br />
===Characteristics===<br />
Two overlapping antisense RNAs from intron 1 of the human ribosomal protein 14 (Rps14) gene, identified by RNase Protection Assay (RPA).. RPA expression analysis using both cell extracts and cell-free transcription system indicates full-length sizes of 250 and 280 nt, respectively. Transcripts terminate at the same nucleotide, therefore alpha-250 overlaps alpha-280 along its whole length.. Transcription of both RNAs is resistant to high concentrations of RNAPII inhibitor alpha-amanitin.<br />
<br />
===Function===<br />
Regulates RPS14 transcription.. Each lncRNA can interact with the Rps14 gene loci to stimulate its expression in-trans.. Each lncRNA is transcribed through a known enhancer with putative transcription factor binding abilities, suggesting the 'enhancer' may be the transcribed RNA, which could be recruiting transcription factors to the Rps14 gene. <br />
<br />
===Expression===<br />
Ubiquitously expressed in the human tissues and cell lines examined. . Alpha-250 was almost exclusively cytoplasmic. Alpha- 280 was mostly in the nucleus.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-NDST1-1:2|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = antisense|<br />
length = 256 nt|<br />
location = chr5+:149829002..149829258|<br />
number = 1|<br />
exons = 149829002..149829258|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr5:149829002..149829258&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GCCGTATTGCGGGGCCGAGGCCTTAAAAGGCTGGACCCGCACTCACCCTTACTTCACAAGCTCCTCCCTGAAAGCAAAACGGGCCTTCTGAGACCAGGAACGAACTCAATCCCGAGTTGGCCAGGATCCAGGTGGGCCAGCCGCGCGTCTCTTGCCCGGCACCTAGCTCGGTTCCCACGGAAAGACCCCCGTCTCTCGTCCCAAGCCCCACAGGGTCCCCTCGCCGCAGGATGCCCCCCGATTGTCGCGCCCGGGC</dnaseq>|<br />
}}<br />
[[Category:Antisense]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT104559&diff=890594NONHSAT1045592014-10-11T01:51:43Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Alpha 250/ Alpha 280<br />
<br />
===Characteristics===<br />
Two overlapping antisense RNAs from intron 1 of the human ribosomal protein 14 (Rps14) gene, identified by RNase Protection Assay (RPA).. RPA expression analysis using both cell extracts and cell-free transcription system indicates full-length sizes of 250 and 280 nt, respectively. Transcripts terminate at the same nucleotide, therefore alpha-250 overlaps alpha-280 along its whole length.. Transcription of both RNAs is resistant to high concentrations of RNAPII inhibitor alpha-amanitin.<br />
<br />
===Function===<br />
Regulates RPS14 transcription.. Each lncRNA can interact with the Rps14 gene loci to stimulate its expression in-trans.. Each lncRNA is transcribed through a known enhancer with putative transcription factor binding abilities, suggesting the 'enhancer' may be the transcribed RNA, which could be recruiting transcription factors to the Rps14 gene. <br />
<br />
===Expression===<br />
Ubiquitously expressed in the human tissues and cell lines examined. . Alpha-250 was almost exclusively cytoplasmic. Alpha- 280 was mostly in the nucleus.<br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT104559|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = antisense|<br />
length = 290 nt|<br />
location = chr5+:149828969..149829258|<br />
number = 1|<br />
exons = 149828969..149829258|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr5:149828969..149829258&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>TACGCTGTGCAGCTCAAACGCGGCCGTGGCCGTGGCCGTATTGCGGGGCCGAGGCCTTAAAAGGCTGGACCCGCACTCACCCTTACTTCACAAGCTCCTCCCTGAAAGCAAAACGGGCCTTCTGAGACCAGGAACGAACTCAATCCCGAGTTGGCCAGGATCCAGGTGGGCCAGCCGCGCGTCTCTTGCCCGGCACCTAGCTCGGTTCCCACGGAAAGACCCCCGTCTCTCGTCCCAAGCCCCACAGGGTCCCCTCGCCGCAGGATGCCCCCCGATTGTCGCGCCCGGGC</dnaseq>|<br />
}}<br />
[[Category:Antisense]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-RASA1-3:25&diff=890593Lnc-RASA1-3:252014-10-11T01:46:02Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
AK082072<br />
<br />
===Characteristics===<br />
Intergenic, 2 exon transcript in mouse, with HeK4me3 chromtain mark at 5' [http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff (2010))]. Human ortholog is linc-POLR3G-8 [http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili (2011))]. Human ortholog has a number of splice isoforms with 3 or more exons.<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Expressed in specific regions of embryonic and post-natal mouse brain (see Chodroff for details) including the rostal migratory stream at P3 with a °∞potential association with inhibitory GABAergic neurons°± [http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff (2010))]. Expressed in opossum and chicken embryonic brains showing spatio-temporal conservation of expression [http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff (2010))].<br />
<br />
===Conservation===<br />
Highly conserved for a lincRNA 36.7% mouse transcript overlaps phastCons elements [http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff (2010))]. Conserved in mammals and back to frog, although mouse exon 2 is not conserved in all orthologs [http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff (2010))]. Opossum ortholog [GenBank:GU951678]. Frog and chicken ([GenBank: CX847574.1 and CR35248.1] respectively [http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff (2010))].<br />
<br />
===Misc===<br />
Mouse transcript contains Evofold-predicted RNA secondary structure [http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff (2010))]. LncRNA transcripts in human from bidirectional promoter with TMEM161B (over 50kb upstream from linc-POLR3G-8 start site) can also share exons 2 and/or 3. See [http://www.ncbi.nlm.nih.gov/nuccore/BC047059 BC047059].<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-RASA1-3:25|<br />
source = LNCipedia2.1|<br />
same = NONHSAT102652|<br />
classification = intergenic|<br />
length = 848 nt|<br />
location = chr5+:87688109..87732764|<br />
number = 3|<br />
exons = 87688109..87688159,87705890..87706011,87732090..87732764|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr5:87688109..87732764&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GGGGGCTTTAAGGAAGCAAATGGACTTTCAGAACAGAGATTGTCAATAAAGATCCAATGTGATAATTTATGTGAAATCTTTCTGCAAACTATACAGTATGATAAAAATATAAGGTAGTTTCACTGGAAACAACAGAAGACTAGAAGCTGATGTGACGTGGCAATATCAACCAGGAATACCCATCTCGAGTTCTGGATATGTGCTCTGAGAAGGTGCCCATGTCACCGACCACACTGGAGGCCAATGCAGATACTGGGGGAAGGTTCCATGGTAGCTAAGTGTGGACAAGCTAATCACTGAAGTTCCCTGATGCAGAGTTGATAATCTCTCTAGAGTTGGATGAAAGACTGTGCTGCCTTGAAGCTCTGAGAGATGCCATGCCAATTCAAGGCAGGGTCTTTATTGTTGAAACTCTTGCGTAATGACATCTTTATTCAGGTGAAAATACAGGATGAATTTCAACTATATGATATTGTTTATGTTCCTCAGACATGTTATTTGTCTTTACAAAGATTGGTTTCAATAAACTGTGTGACTGATATTAAATAAACATGGAATTTTACACATTCATAATATTTGGTTTCTTGTGATTTTGATGAACTATACTTTCAAGCATTGTCAGTTCATCCTCATTTACAAGGAAACATTTGCTGTAGCAGAGTGATGTAGTGACTTGCTTTACTTAAGATAAGTCAACTTTTCTATTCAATGTTTAATGTGAAACTGACTTAAAAATTTTCTTTTAGGCCACATTTACATTTCTGTTTGTATAACATGCATTATACTATTTTAACTTAATACTATGGCTATATAAACCAAAGACATCCTAATTCTGTTTTTAATTTATT</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-RASA1-3:23&diff=890592Lnc-RASA1-3:232014-10-11T01:43:59Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
AK082072<br />
<br />
===Characteristics===<br />
Intergenic, 2 exon transcript in mouse, with HeK4me3 chromtain mark at 5' ([http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff 2010)]).<br />Human ortholog is linc-POLR3G-8 ([http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili 2011)]). Human ortholog has a number of splice isoforms with 3 or more exons.<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Expressed in specific regions of embryonic and post-natal mouse brain (see Chodroff for details) including the rostal migratory stream at P3 with a “potential association with inhibitory GABAergic neurons” ([http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff 2010)]).<br />Expressed in opossum and chicken embryonic brains showing spatio-temporal conservation of expression ([http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff 2010)]).<br />
<br />
===Conservation===<br />
Highly conserved for a lincRNA 36.7% mouse transcript overlaps phastCons elements ([http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff 2010)]).<br />Conserved in mammals and back to frog, although mouse exon 2 is not conserved in all orthologs ([http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff 2010)]).<br />Opossum ortholog [GenBank:GU951678]. Frog and chicken ([GenBank: CX847574.1 and CR35248.1] respectively ([http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff 2010)]).<br />
<br />
===Misc===<br />
Mouse transcript contains Evofold-predicted RNA secondary structure ([http://www.ncbi.nlm.nih.gov/pubmed/20624288 (Chodroff 2010)]).<br />LncRNA transcripts in human from bidirectional promoter with TMEM161B (over 50kb upstream from linc-POLR3G-8 start site) can also share exons 2 and/or 3. See [http://www.ncbi.nlm.nih.gov/nuccore/BC047059 BC047059].<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-RASA1-3:23|<br />
source = LNCipedia2.1|<br />
same = NONHSAT102650|<br />
classification = intergenic|<br />
length = 953 nt|<br />
location = chr5+:87686219..87732860|<br />
number = 3|<br />
exons = 87686219..87686278,87705890..87706011,87732090..87732860|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr5:87686219..87732860&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CCAGACACCACCGAGAGACACAGGGCTTTTTAGCGTTCACTGTATTTTCACTTCCACCGGATCCAATGTGATAATTTATGTGAAATCTTTCTGCAAACTATACAGTATGATAAAAATATAAGGTAGTTTCACTGGAAACAACAGAAGACTAGAAGCTGATGTGACGTGGCAATATCAACCAGGAATACCCATCTCGAGTTCTGGATATGTGCTCTGAGAAGGTGCCCATGTCACCGACCACACTGGAGGCCAATGCAGATACTGGGGGAAGGTTCCATGGTAGCTAAGTGTGGACAAGCTAATCACTGAAGTTCCCTGATGCAGAGTTGATAATCTCTCTAGAGTTGGATGAAAGACTGTGCTGCCTTGAAGCTCTGAGAGATGCCATGCCAATTCAAGGCAGGGTCTTTATTGTTGAAACTCTTGCGTAATGACATCTTTATTCAGGTGAAAATACAGGATGAATTTCAACTATATGATATTGTTTATGTTCCTCAGACATGTTATTTGTCTTTACAAAGATTGGTTTCAATAAACTGTGTGACTGATATTAAATAAACATGGAATTTTACACATTCATAATATTTGGTTTCTTGTGATTTTGATGAACTATACTTTCAAGCATTGTCAGTTCATCCTCATTTACAAGGAAACATTTGCTGTAGCAGAGTGATGTAGTGACTTGCTTTACTTAAGATAAGTCAACTTTTCTATTCAATGTTTAATGTGAAACTGACTTAAAAATTTTCTTTTAGGCCACATTTACATTTCTGTTTGTATAACATGCATTATACTATTTTAACTTAATACTATGGCTATATAAACCAAAGACATCCTAATTCTGTTTTTAATTTATTGTTTTGCAAGATAAATAATTTTTAATGCACTAATGAAGCTAAGGAGTTCATATTAAAAGACATGTTATATGACCTACTGAAGTTGAGCTATGGAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000554403.1&diff=890591ENST00000554403.12014-10-11T01:40:40Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Zfhx2as: zinc finger homeobox 2, antisense<br />
<br />
===Characteristics===<br />
Antisense transcription begins 6-10kb downstream of the Zfhx2 polyA site and ends in first exon of Zfhx2. Alternatively spliced. Multiple start sites. Estimated as up to ~30 kb in length.<br />
<br />
===Function===<br />
Zfhx2as negatively regulates the expression of Zfhx2. Knockout of antisense RNA lead to up-regulation of Zfhx2 expression, with coding gene expression in areas previously showing only expression of the antisense transcript. The same effect was seen in a mutant where Zfhx2 and Zfhx2as no longer overlapped strongly suggesting Zfhx2as negatively regulates Zfhx2.<br />
<br />
===Expression===<br />
Expressed in a number of specific regions in the developing mouse brain including the rostral migratory stream (RMS). Antisense RNA was expressed in a complementary manner to the sense coding sequence. For example the antisense RNA was expressed initially in hippocampal development, with the sense RNA only starting to be expressed when antisense transcription declined. Or, alternatively in the dorsal forebrain where sense and antisense transcripts are expressed in different layers of cells at the same stage. Expression was highest in mid-gestation E13.5-E16.5. Adult expression specific to brain, with expression in areas of adult neurogenesis.<br />
<br />
===Conservation===<br />
Identified in rodents and humans.<br />
<br />
===Misc===<br />
NCBI Gene and Refseq sequence given for Zfhx2as (provided here) is only a partial sequence from the center of the antisense transcript. Since full length transcript not defined, UCSC browser links are best estimates of transcripts. Mouse transcript comes from a Scripture transcript defined by [http://www.ncbi.nlm.nih.gov/pubmed/20436462 Guttman (2010)].<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000554403.1|<br />
source = Gencode19|<br />
same = lnc-THTPA-2:5,NONHSAT035910|<br />
classification = intergenic|<br />
length = 2524 nt|<br />
location = chr14+:23982558..24013485|<br />
number = 3|<br />
exons = 23982558..23983625,24011368..24011464,24012127..24013485|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr14:23982558..24013485&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GCATTGCTGTGTGTCTGCCACCGCTGCCTGGCACTCATGGGGCCGTGTGTGTGTGTATGTGTGTGTGCGCGCATGTACATGTACGCATAAGCGTGTGCTGTATGTGAGCCTCCTGGGCATGGGTGGGGGTTGGCATTGCGGTTGCCAATCTAGTGTACAACCAGAAGGACAGAGGGATGGAGTGGAAGAAGGAGGGGAGAGGCTTGGGGTCTGGGAGGGGAGAAGAGGGTGCATGAGTTGCTTCATGCTGCCTGCTTACAGGCATTGGCATTGTAGCTGCCACCCTTGTGCCCACGGAGATGGGAGGAGGCGAGTGGAGGGCGCAGCGGCAGGAGTCCTGTGCTCTGGGAGGAAGGCTTTGTACATGGGAGCTGTTGGCATCACATCTGTCAGGCCGGTGCCCAGAACTGGGGCAATGGAGACTGGGGGATCCAGGAAGCAGGGAGGAGGGGCAGAATGTGTTTCTGATGTTGCTGTCCCTCTAGAAGCTCAGCTCTGAAAAATGGTTGGAGTATGAGGTGATTAGTGCTCTTCCAGCTTGAGGAAGTAAAGTGGTGGAGAGAGTAGCCAGGGAAGTGCCAAGAAACAGTCTACGAGCCAGGGAGGAGGGAGTGTGCCACCGTACCCAGGGAGAACTTGTTGGGGCTGGCAATCTGGCCCTTTGTCAGAGTATTGAAGGAGACAGCAAGAGGACCAGATGTGAGGTGGGTGGGTGCTGGCACTGCCCATGGCACCTGGCACAGGCTCTGGCATTGTGTGGAACAGGGGAGGTTGACAGTGCCTCTTGCCAATCTGGTTGAGAGGGCTATTGTGCCAGGAGTGAGAAGGAAGGAGGTGAAACATTTCGGGAGGTGGGGTGTTTGGGAGACCAGATTTTTTTCTGCCAGGTCCTCCTTCCCCTTCCCTCTTAGGCATGGGGAGTGGAGCAACAGACGGAGAGTGGCATGAAGACACAAAGGAGGAAGCACACCATTGCCAAGACCCCAAGGAAGAAGGATGGAAAGCGCTGGCAGTCCTGCCTGGCCCCCAGCCAGTTCCCTGCTGAAGATGGCCAGATCCCCTTGTCTGGCCTCCCAGCTCTGGCACCAGATTGGGATGGTGGCCTGTCCCCAGTGAGAAGGAGGTGGCAAGGAGGCTGTCTCTTGCACTTTGCAAGATGCTTAAGTAGAGACAGGGTTTCACCATGTTGTCCAGGATGGTCTCTATCTCCTGACTACCTGACCCGCCCACCTTGGCCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCTGGAAGGAAAACATTCTGAGTGACCGTGTATGTAAATAAGTCTTTCTGGTTATTTTATTCTGTGAACCTGTGTGATGTAATGACTGCATTTAAATAGTATTACAACAAAAACTAATTGTAATAATAGTAAATAGCTAACATCTTTAAATGTTTGCCATGGGCCAGGCACCGTGCTAGGCCCTCGGCAAGTATCACATCACCTAATCCTCCACTTCAATCTGATGCAATAGATGTAGCTATTCATTCCTATTTTACAAACATGGAGACTGATTTAGATGGGTTAAGTAATTTTTAAGATCTCCTGCTTAAAAAGAAGTAGAGTTGAGATTGGAACTCAGGTAGCCTGATGTCAGTACCTCTGCTCTTGGGTTAATTTGTAAGCTTCTGAACTCTGGCTGGTATGCATTTTGAATGAGGTCTTTTGAGTCTGATTGTATTACTCTGTGTGTCACCTTGAGCATATGTGCTATCATGTTCCGCCTGAAGGTGCTAGATGGCTGTCTTCCATTTGGTTTGTTTCTTAGTATAAGATGGACCAGAAGAGGAGCACTGCTTTGCGCAACTCCAGGGTGCGTCATTCACACTGCAGTCCATGCAGGGGCACTGGCCATGCCCTGTGTGAAGGAAGGGAAGGAGCGGGAGGGAGGGAGTGGGAACAGGAGGGAAGGGATAGATAATGGCGGGTAGTGTTCTTTGAATGATATGTGTACCCATTTGTGACAACATCTCTTAAAGTTGAAGGTCTACACATGTGTATCCATATTAGCATATGAACTTCATCAGACAAGCACTCTCCCTCCAACAGAGGGAGACCCTGTCTCAAAAAACAAAAAAAAATAGCCTTTAGAGTCAGACAGACCTGGAATCAAATTCTAGTTCTGTTTCTTAATATGTAAATGACCTCAGGTAAGTTGCGTAAAGTCTCAATTTAGTCTCTTCATATAGAGAATGGGGCAGGCCGGGCACGCGCCTATAATTCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATTGGAGGTCAGGAGCTTGAGACCAGCCTGGCCAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAAATGAGCCGGGCGTGGTGGCATGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATCGCTTGAACCCGGGAAGCAGAGGTTGTAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTAAAAACAAACACATCAGAAACAG</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT080206&diff=890590NONHSAT0802062014-10-11T01:39:19Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Zfas1: Zinc finger antisense 1<br />
<br />
===Characteristics===<br />
Expressed from a bi-directional promoter with the protein-coding gene Znfx1. Zfas1 5°Ø is antisense to 5°Ø of Znfx1. Spliced, polyadenylated. SnoRNA host gene, contains 3 intronic C/D box snoRNAs. Human orthologue is alternatively spliced. <br />
<br />
===Function===<br />
Zfas1 appears to have a role in mammary gland proliferation and differentiation. - Zfas1 knockdown in a HC11 cell culture model of mammary differentiation showed increased differentiation and a probable increase in proliferation. Knockdown had little effect on intronic snoRNA expression suggesting the Zfas1 host transcript is functional. - Zfas1 knockdown appears to affect Znfx1 expression.<br />
<br />
===Expression===<br />
Highly expressed and differentially expressed during mammary development. Strongly down-regulated during lactation compared to pregnancy and then up-regulated again during involution. Znfx1 coding gene,in contrast, was more lowly expressed and was not differentially expressed during mammary gland development. Expressed in the epithelial cells of the mammary gland ducts and alveoli. Zfas1 is widely expressed in mouse tissues including brain, liver, lung, kidney, spleen, heart and embryo, showing higher expression than Znfx1. Zfas1 extremely stable with a half life of >32 hrs in N2A (neuroblastoma) cells. Compared to a half life of 50 minutes for Znfx1. The increased stability of Zfas1 may explain why its expression level is much higher than Znfx1. However, in mouse 3T3 and embryonic stem cells Zfas1 stability was much lower with a half-life of 1.7 hr and 63 min respectively, while the human ZFAS1 had a half-life of 3 hr in B-cells ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/19001483 Sharova (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/22406755 Clark (2012)]). These results suggest there is significant regulation of Zfas1 stability both within and between species [http://www.ncbi.nlm.nih.gov/pubmed/22406755 (Clark (2012))]. Localised to both the nucleus and the cytoplasm. Human ZFAS1 expression is reduced in ductal carinoma compared to normal tissue.<br />
<br />
===Conservation===<br />
Syntenic transcription observed in multiple mammals. Low conservation of Zfas1 sequence between human and mouse compared to snoRNAs, but Zfas1 has potential secondary structural similarities.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT080206|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 1020 nt|<br />
location = chr20+:47894715..47905797|<br />
number = 5|<br />
exons = 47894715..47895253,47895641..47895745,47897022..47897107,47897440..47897501,47905582..47905797|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr20:47894715..47905797&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CGGGGGCCCAGGGTGGAGAGCACGAGGGCCTGGCCCAGGCACGGCCGGCGCCTCCGCCCTCGAGGAGGGCGTCACCTCAGCTCCCCCCGGCGGCGGAGCCGGCGGGCTCAGGCGGGCGCGGCTGAGGGGAGCGGACCGCGGGGGGCGGGAGATGACTGCGCCCAAGGCCTTTGCGGGCCTCAGCCGGCCCCAGAGGAAGGGGAACCCGTCGAGCGGTTTGGTGCGTGTGAAGCGCGACATGGCGAGGAAGCGGACAAGCCCGGGTGGCCCGGCGTGTAGAGGGAAGGGGGCGGGGCTAGACGCGGCCTGGACAACTACTAGAGCGCCTCGGGCTGTGCTGCTCGAGACTACATTTCCCAGAGCGACGCGCGCGGAGCGGGCGGGAAAGAGAGCGTTTCGGGTCCAGTGCGCAGGTGCGAAAGCCATCTTTGGTTATATAAGGGAGGTTCAGGAAGCCATTCGTTCTTTCGCGTCTGCGGTGCCCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGGCTTCATACGCTATTGTCCTGCCCGTTAGAGCAGCCAGCGGGTACAGAATGGATTTTGGAAGAGGGAGTCACCACTGGACCTCCAAGGAAGCCACGTGCAGACATCTACAACCTTCGATCTCCTGACGAGTTTATTGTTGGCCAAAACCAGGCTTTGATTGAACCAGGATGAATGCGGGTGTTGGAAGTAGAATATATATATACATATAAAATTGGTTGGGAGCCACGTGTACCAGTGTGTGTTGATCTTGGCTTGATTCAGTCTGCCTTGTAACAGAAACTGGCGATGGAATATGAGAGGAGCCCTCTGGAAAGAAAAGGACAGACCCTGTGCTTTCATGAAAGTGAAGATCTGGCTGAACCAGTTCCACAAGGTTACTGTATACATAGCCTGAGTTTAAAAGGCTGTGCCCACTTCAAGAATGTCATTGTTAGACTTTGAAATTTCTAACTGCCTACCTGCATAAAGAAAATAAAATCTTTTAAATCAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT074775&diff=890589NONHSAT0747752014-10-11T01:37:45Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Zeb2NAT: Zeb2 natural antisense transcript<br />
<br />
===Characteristics===<br />
>1.2 kb; antisense to Zeb2 (a transcriptional repressor of E-cadherin) [http://www.ncbi.nlm.nih.gov/pubmed/13679026 (Nelles (2003))].<br />
<br />
===Function===<br />
Controls translation and therefore function of the Zeb2 protein coding gene through regulation of Zeb2 mRNA splicing [http://www.ncbi.nlm.nih.gov/pubmed/18347095 (Beltran (2008))]. Zeb2 translation requires retention of an intron, Zeb2NAT overlaps the 5' splicing site of this intron and when expressed inhibits splicing allowing translation of Zeb2 [http://www.ncbi.nlm.nih.gov/pubmed/18347095 (Beltran (2008))]. Snail1 acts to stimulate Zeb2 synthesis via post-transcriptional regulation which appears to be mediated by Zeb2NAT [http://www.ncbi.nlm.nih.gov/pubmed/18347095 (Beltran (2008))].<br />
<br />
===Expression===<br />
Expression is upregulated by Snail1 [http://www.ncbi.nlm.nih.gov/pubmed/18347095 (Beltran (2008))].<br />
<br />
===Conservation===<br />
Good conservation between human and mouse [http://www.ncbi.nlm.nih.gov/pubmed/13679026 (Nelles (2003))].<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT074775|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 1187 nt|<br />
location = chr2+:145275982..145278683|<br />
number = 4|<br />
exons = 145275982..145276142,145277526..145277677,145277782..145277984,145278013..145278683|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr2:145275982..145278683&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GCTGTGCCTCGAGGATTAGTTTAAACAGGGGGCTATAAAAGATGTAACAGATGCAAACTGTAACACAAGGGCCATTAACCCTTTCTCTGCCGGGCACACTCAGTCCCCACGCCCCACACCTATTGTCTCCTGTGCTAGAAGCTTTGCAGAAAACCTGGAAATTTTGGCCAGAAATGGTGAGAAGAAAAAGCATGAAGAAGCCGCGAAGTGTGGGGGAGAAAAAGGTGGAAGCGAAGAAACAGCTCCCGGAGCAAACTGTACAAAAACCTCGCCAAGAGTGTCGGGAGGCAGGACCGTTATTCCTGCAGAGCAGGAGAGAGACGAGAGACCCTGAAACACGCGCCACCTATCTTTGTGGGGAGGGATAATTGAAGCGCCCTGAGCGTGAGCATCATGTGAAAACGTGATCGCCAAGTTTCTCTCTGGGAAAGGATCTGGGATAGATTATACCTTGAAGTCTCCGCAAACGCTTTAGTGGAAGAAATGAAATTCCACCTCCCTCCCTTCCTCCTCTCCCTCCCTCCCTTCTCCCCCCCTCCACCCCCCCCTCCCCGCCCGTCAAGCCTTTGGCATCATTATCCTCATCACTAAATCCTACAGAGTACAGGGCGGAAAACGGTGCACACCATTCACAGAACTGGAGAACTCCAAGGGGCGAAAGTTAAAGGGAAAGATCCCGGGTCCTCAATCCAGATAGTCTCTTCTTATACAGATATCTCTAATGACCAGATTTGAGATGCACATCAAATTGTGTAGGTATCTCAGTACAGCTTCTGGAACAAAGTTCTCTGCCCTTTCTCTTATTGTTATTTTTTTCTTTTTAGGTACCAGAGCCAGAAAAAAAAATGCTGCATGGGAGCTGCATCTTAGGGCATGTGTATTAGGGTGTGTGCATGATGAATTTCTGGACTGGATCCCAATATTAAAAAGTAGTTTGGCATTTTAATAAAGGGTCTCTAAGTAAATTAAAATAGAACACTCGGTTGGCCGATCTCTGAATCTCTCTACACCTCGGGGAGACCTCACTACAAAGTAAGGGAGAGTGTGTAGGGAGGCAGGAGGAGAAACGAGAAAGGCCATAGAGAAACTTAGCAGGGAAGGGAGAGCATGATATTAAACGGCATGGGGTCTAAGTTTTGGAGTATATATTTTTTGATATTACAATTAAAGTAAGATTAAAAAGAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT137541&diff=890588NONHSAT1375412014-10-11T01:36:26Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Xist: X inactive-specific transcript<br />
<br />
===Characteristics===<br />
Spliced, polyadenylated, ~17kb in mice, ~19kb in humans. Contains repeated sequence motifs A-F that are critical for its function. Xist is located on the X chromosome in the X-inactivation center (Xic), an approximately 100-kb region in the mouse containing (as of June 2012) five other lncRNAs, many of which play crucial roles in X-chromosome inactivation (XCI). Xist expression initiates the process of XCI in mammals.<br />
<br />
===Function===<br />
Xist is the master regulator of mammalian XCI, the mechanism of dosage compensation that balances X-linked gene expression between males and females. Xist function is required to initiate XCI ([http://www.ncbi.nlm.nih.gov/pubmed/8538762 Penny (1996)], [http://www.ncbi.nlm.nih.gov/pubmed/9009199 Marahrens (1997)]). Ectopic Xist expression from an autosomal transgene causes long-range gene repression in cis [http://www.ncbi.nlm.nih.gov/pubmed/10882105 (Wutz (2000))]. Xist and RepA (see associated components below) RNAs bind to and recruit PRC2, which catalyzes the deposition of the repressive chromatin mark H3K27me3 on the Xi ([http://www.ncbi.nlm.nih.gov/pubmed/18974356 Zhao (2008)], [http://www.ncbi.nlm.nih.gov/pubmed/21123648 Kaneko (2010)], [http://www.ncbi.nlm.nih.gov/pubmed/20542000 Kanhere (2010)], [http://www.ncbi.nlm.nih.gov/pubmed/21172659 Zhao (2010)], [http://www.ncbi.nlm.nih.gov/pubmed/22659877 Guil (2012)]). Small RNAs formed from Xist/Tsix duplexes may play a role in regulating Xist expression and XCI [http://www.ncbi.nlm.nih.gov/pubmed/18535243 (Ogawa (2008))]. However, loss of Dicer has only a modest effect on Xist expression [http://www.ncbi.nlm.nih.gov/pubmed/19164542 (Kanellopoulou (2009))], contrary to what would be expected if RNAi is a major regulator of XCI. hnRNP U (also known as SP120 or SAF-A) binds Xist through its RGG domain while the SAF domain is also required for localisation to the Xi. hnRNP U is required for both Xist localisation to the Xi and the initation of X-inactivation [http://www.ncbi.nlm.nih.gov/pubmed/20833368 (Hasegawa (2010))]. Xist Repeat C sequences are required for Xist localization to the Xi ([http://www.ncbi.nlm.nih.gov/pubmed/11481485 Beletskii (2001)], [http://www.ncbi.nlm.nih.gov/pubmed/21135235 Sarma (2010)]). YY1 can interact with several DNA binding sites within exon 1 of Xist, and also to the repeat C (and perhaps repeat B) RNA sequences of the Xist transcript. Thus YY1 tethers Xist RNAs to the Xi and nucleates the Xist cloud that coats the Xi [http://www.ncbi.nlm.nih.gov/pubmed/21729784 (Jeon (2011))]. Xist forms a transcriptionally silenced sub-nuclear domain [http://www.ncbi.nlm.nih.gov/pubmed/16912274 (Chaumeil (2006))] and perinucleolar localisation of the silent Xist coated chromosome has been observed [http://www.ncbi.nlm.nih.gov/pubmed/17512404 (Zhang (2007))]. The A region repeats are essential for the recruitment of late inactivated X genes to the silencing compartment and for the recruitment of the silencing complex PRC2 [http://www.ncbi.nlm.nih.gov/pubmed/20052282 (Maenner (2010))]. After the initiation of XCI, Xist function is not absolutely required to maintain XCI in fibroblasts [http://www.ncbi.nlm.nih.gov/pubmed/10431231 (Csankovszki (1999))]. Nor is continued Xist expression required to maintain XCI-like repression around an autosomal Xist transgene in male, differentiated ES cells [http://www.ncbi.nlm.nih.gov/pubmed/10882105 (Wutz (2000))]. However, lack of Xist function in differentiated cells can lead to partial reactivation of select X-linked genes [http://www.ncbi.nlm.nih.gov/pubmed/11352938 (Csankovszki (2001))].<br />
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===Expression===<br />
Xist is expressed in all somatic cells in female eutherian mammals, monoallelically from the inactive X-chromosome (Xi) [http://www.ncbi.nlm.nih.gov/pubmed/1985261 (Brown (1991))]. Xist is not expressed in males. Xist is a nuclear RNA that coats the Xi ([http://www.ncbi.nlm.nih.gov/pubmed/1423611 Brown (1992)], [http://www.ncbi.nlm.nih.gov/pubmed/8636206 Clemson (1996)]). In the mouse, Xist expression is imprinted at specific times and places in development: Xist is transcribed exclusively from the paternally-inherited X (and thus the paternal X is always the Xi) only in the early pre-implantation blastocyst, and later in development only in extra-embryonic tissues such as the placenta. Imprinted XCI in humans has not been demonstrated and may not exist [http://www.ncbi.nlm.nih.gov/pubmed/20532033 (Moreira de Mello (2010))]. In somatic tissues in mouse and human, XCI is random, not imprinted: either the paternal or maternal X can express Xist and become the Xi. This decision is made in each cell of the epiblast in the mouse, and the same X is inactivated in subsequent generations of daughter cells. Thus expression of Xist (and of nearly all X-linked genes) is mosaic, in the sense that each of the two alleles is active in different populations of cells. Stage specific expression in different regions of developing mouse retina, with Tsix displaying a similar but weaker profile [http://www.ncbi.nlm.nih.gov/pubmed/15226823 (Blackshaw (2004))]. In female undifferentiated mouse ES (embryonic stem) and iPS (induced pluripotent stem) cells, Xist is not expressed and both X chromosomes are active. Differentiation of mouse ES cells results in the onset of Xist expression and XCI, and thus these cells are an important model system for the study of XCI. In contrast, Xist expression and XCI are variable in female undifferentiated human ES cells ([http://www.ncbi.nlm.nih.gov/pubmed/18339804 Shen (2008)], [http://www.ncbi.nlm.nih.gov/pubmed/18339803 Silva (2008)], [http://www.ncbi.nlm.nih.gov/pubmed/18340642 Hall (2008)], [http://www.ncbi.nlm.nih.gov/pubmed/20471072 Lengner (2010)]) and iPS cells ([http://www.ncbi.nlm.nih.gov/pubmed/21276761 Bruck (2011)], [http://www.ncbi.nlm.nih.gov/pubmed/19898493 Hanna (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/21074045 Marchetto (2010)], [http://www.ncbi.nlm.nih.gov/pubmed/20727844 Tchieu (2010)]), which may reflect variability in the broader epigenetic states and developmental potential of these cells.<br />
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===Conservation===<br />
Xist is present in all eutherian (placental) mammals examined to date, but it is not present in marsupials or monotremes ([http://www.ncbi.nlm.nih.gov/pubmed/16778056 Duret (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17333538 Davidow (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17333539 Hore (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17333537 Shevchenko (2007)]). An unrelated ncRNA in marsupials, Rsx, is likely to play a role similar to that of Xist in XCI [http://www.ncbi.nlm.nih.gov/pubmed/22722828 (Grant (2012))]. The most conserved Xist RNA region, the A region, contains eight or nine repeats separated by U-rich spacers.<br />
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===Misc===<br />
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===Transcriptomic Nomeclature===<br />
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===Regulation===<br />
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===Allelic Information and Variation===<br />
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===Evolution===<br />
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==Labs working on this lncRNA==<br />
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==References==<br />
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{{basic|<br />
tID = NONHSAT137541|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 19271 nt|<br />
location = chrX-:73040486..73072588|<br />
number = 6|<br />
exons = 73040486..73047819,73048903..73049066,73050901..73051109,73053073..73053209,73057275..73057338,73061217..73072588|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chrX:73040486..73072588&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CCTTCAGTTCTTAAAGCGCTGCAATTCGCTGCTGCAGCCATATTTCTTACTCTCTCGGGGCTGGAAGCTTCCTGACTGAAGATCTCTCTGCACTTGGGGTTCTTTCTAGAACATTTTCTAGTCCCCCAACACCCTTTATGGCGTATTTCTTTAAAAAAATCACCTAAATTCCATAAAATATTTTTTTAAATTCTATACTTTCTCCTAGTGTCTTCTTGACACGTCCTCCATATTTTTTTAAAGAAAGTATTTGGAATATTTTGAGGCAATTTTTAATATTTAAGGAATTTTTCTTTGGAATCATTTTTGGTTGACATCTCTGTTTTTTGTGGATCAGTTTTTTACTCTTCCACTCTCTTTTCTATATTTTGCCCATCGGGGCTGCGGATACCTGGTTTTATTATTTTTTCTTTGCCCAACGGGGCCGTGGATACCTGCCTTTTAATTCTTTTTTATTCGCCCATCGGGGCCGCGGATACCTGCTTTTTATTTTTTTTTCCTTAGCCCATCGGGGTATCGGATACCTGCTGATTCCCTTCCCCTCTGAACCCCCAACACTCTGGCCCATCGGGGTGACGGATATCTGCTTTTTAAAAATTTTCTTTTTTTGGCCCATCGGGGCTTCGGATACCTGCTTTTTTTTTTTTTATTTTTCCTTGCCCATCGGGGCCTCGGATACCTGCTTTAATTTTTGTTTTTCTGGCCCATCGGGGCCGCGGATACCTGCTTTGATTTTTTTTTTTCATCGCCCATCGGTGCTTTTTATGGATGAAAAAATGTTGGTTTTGTGGGTTGTTGCACTCTCTGGAATATCTACACTTTTTTTTGCTGCTGATCATTTGGTGGTGTGTGAGTGTACCTACCGCTTTGGCAGAGAATGACTCTGCAGTTAAGCTAAGGGCGTGTTCAGATTGTGGAGGAAAAGTGGCCGCCATTTTAGACTTGCCGCATAACTCGGCTTAGGGCTAGTCGTTTGTGCTAAGTTAAACTAGGGAGGCAAGATGGATGATAGCAGGTCAGGCAGAGGAAGTCATGTGCATTGCATGAGCTAAACCTATCTGAATGAATTGATTTGGGGCTTGTTAGGAGCTTTGCGTGATTGTTGTATCGGGAGGCAGTAAGAATCATCTTTTATCAGTACAAGGGACTAGTTAAAAATGGAAGGTTAGGAAAGACTAAGGTGCAGGGCTTAAAATGGCGATTTTGACATTGCGGCATTGCTCAGCATGGCGGGCTGTGCTTTGTTAGGTTGTCCAAAATGGCGGATCCAGTTCTGTCGCAGTGTTCAAGTGGCGGGAAGGCCACATCATGATGGGCGAGGCTTTGTTAAGTGGTTAGCATGGTGGTGGACATGTGCGGTCACACAGGAAAAGATGGCGGCTGAAGGTCTTGCCGCAGTGTAAAACATGGCGGGCCTCTTTGTCTTTGCTGTGTGCTTTTCGTGTTGGGTTTTGCCGCAGGGACAATATGGCAGGCGTTGTCATATGTATATCATGGCTTTTGTCACGTGGACATCATGGCGGGCTTGCCGCATTGTTAAAGATGGCGGGTTTTGCCGCCTAGTGCCACGCAGAGCGGGAGAAAAGGTGGGATGGACAGTGCTGGATTGCTGCATAACCCAACCAATTAGAAATGGGGGTGGAATTGATCACAGCCAATTAGAGCAGAAGATGGAATTAGACTGATGACACACTGTCCAGCTACTCAGCGAAGACCTGGGTGAATTAGCATGGCACTTCGCAGCTGTCTTTAGCCAGTCAGGAGAAAGAAGTGGAGGGGCCACGTGTATGTCTCCCAGTGGGCGGTACACCAGGTGTTTTCAAGGTCTTTTCAAGGACATTTAGCCTTTCCACCTCTGTCCCCTCTTATTTGTCCCCTCCTGTCCAGTGCTGCCTCTTGCAGTGCTGGATATCTGGCTGTGTGGTCTGAACCTCCCTCCATTCCTCTGTATTGGTGCCTCACCTAAGGCTAAGTATACCTCCCCCCCCACCCCCCAACCCCCCCAACTCCCCACCCCCACCCCCCACCCCCCACCTCCCCACCCCCCTACCCCCCTACCCCCCTACCCCCCTCTGGTCTGCCCTGCACTGCACTGTTGCCATGGGCAGTGCTCCAGGCCTGCTTGGTGTGGACATGGTGGTGAGCCGTGGCAAGGACCAGAATGGATCACAGATGATCGTTGGCCAACAGGTGGCAGAAGAGGAATTCCTGCCTTCCTCAAGAGGAACACCTACCCCTTGGCTAATGCTGGGGTCGGATTTTGATTTATATTTATCTTTTGGATGTCAGTCATACAGTCTGATTTTGTGGTTTGCTAGTGTTTGAATTTAAGTCTTAAGTGACTATTATAGAAATGTATTAAGAGGCTTTATTTGTAGAATTCACTTTAATTACATTTAATGAGTTTTTGTTTTGAGTTCCTTAAAATTCCTTAAAGTTTTTAGCTTCTCATTACAAATTCCTTAACCTTTTTTTGGCAGTAGATAGTCAAAGTCAAATCATTTCTAATGTTTTAAAAATGTGCTGGTCATTTTCTTTGAAATTGACTTAACTATTTTCCTTTGAAGAGTCTGTAGCACAGAAACAGTAAAAAATTTAACTTCATGACCTAATGTAAAAAAGAGTGTTTGAAGGTTTACACAGGTCCAGGCCTTGCTTTGTTCCCATCCTTGATGCTGCACTAATTGACTAATCACCTACTTATCAGACAGGAAACTTGAATTGCTGTGGTCTGGTGTCCTCTATTCAGACTTATTATATTGGAGTATTTCAATTTTTCGTTGTATCCTGCCTGCCTAGCATCCAGTTCCTCCCCAGCCCTGCTCCCAGCAAACCCCTAGTCTAGCCCCAGCCCTACTCCCACCCCGCCCCAGCCCTGCCCCAGCCCCAGTCCCCTAACCCCCCAGCCCTAGCCCCAGTCCCAGTCCTAGTTCCTCAGTCCCGCCCAGCTTCTCTCGAAAGTCACTCTAATTTTCATTGATTCAGTGCTCAAAATAAGTTGTCCATTGCTTATCCTATTATACTGGGATATTCCGTTTACCCTTGGCATTGCTGATCTTCAGTACTGACTCCTTGACCATTTTCAGTTAATGCATACAATCCCATTTGTCTGTGATCTCAGGACAAAGAATTTCCTTACTCGGTACGTTGAAGTTAGGGAATGTCAATTGAGAGCTTTCTATCAGAGCATTATTGCCCACAATTTGAGTTACTTATCATTTTCTCGATCCCCTGCCCTTAAAGGAGAAACCATTTCTCTGTCATTGCTTCTGTAGTCACAGTCCCAATTTTGAGTAGTGATCTTTTCTTGTGTACTGTGTTGGCCACCTAAAACTCTTTGCATTGAGTAAAATTCTAATTGCCAATAATCCTACCCATTGGATTAGACAGCACTCTGAACCCCATTTGCATTCAGCAGGGGGTCGCAGACAACCCGTCTTTTGTTGGACAGTTAAAATGCTCAGTCCCAATTGTCATAGCTTTGCCTATTAAACAAAGGCACCCTACTGCGCTTTTTGCTGTGCTTCTGGAGAATCCTGCTGTTCTTGGACAATTAAAGAACAAAGTAGTAATTGCTAATTGTCTCACCCATTAATCATGAAGACTACCAGTCGCCCTTGCATTTGCCTTGAGGCAGCGCTGACTACCTGAGATTTAAGAGTTTCTTAAATTATTGAGTAAAATCCCAATTATCCATAGTTCTGTTAGTTACACTATGGCCTTTGCAAACATCTTTGCATAACAGCAGTGGGACTGACTCATTCTTAGAGCCCCTTCCCTTGGAATATTAATGGATACAATAGTAATTATTCATGGTTCTGCGTAACAGAGAAGACCCACTTATGTGTATGCCTTTATCATTGCTCCTAGATAGTGTGAACTACCTACCACCTTGCATTAATATGTAAAACACTAATTGCCCATAGTCCCACTCATTAGTCTAGGATGTCCTCTTTGCCATTGCTGCTGAGTTCTGACTACCCAAGTTTCCTTCTCTTAAACAGTTGATATGCATAATTGCATATATTCATGGTTCTGTGCAATAAAAATGGATTCTCACCCCATCCCACCTTCTGTGGGATGTTGCTAACGAGTGCAGATTATTCAATAACAGCTCTTGAACAGTTAATTTGCACAGTTGCAATTGTCCAGAGTCCTGTCCATTAGAAAGGGACTCTGTATCCTATTTGCACGCTACAATGTGGGCTGATCACCCAAGGACTCTTCTTGTGCATTGATGTTCATAATTGTATTTGTCCACGATCTTGTGCACTAACCCTTCCACTCCCTTTGTATTCCAGCAGGGGACCCTTACTACTCAAGACCTCTGTACTAGGACAGTTTATGTGCACAATCCTAATTGATTAGAACTGAGTCTTTTATATCAAGGTCCCTGCATCATCTTTGCTTTACATCAAGAGGGTGCTGGTTACCTAATGCCCCTCCTCCAGAAATTATTGATGTGCAAAATGCAATTTCCCTATCTGCTGTTAGTCTGGGGTCTCATCCCCTCATATTCCTTTTGTCTTACAGCAGGGGGTACTTGGGACTGTTAATGCGCATAATTGCAATTATGGTCTTTTCCATTAAATTAAGATCCCAACTGCTCACACCCTCTTAGCATTACAGTAGAGGGTGCTAATCACAAGGACATTTCTTTTGTACTGTTAATGTGCTACTTGCATTTGTCCCTCTTCCTGTGCACTAAAGACCCCACTCACTTCCCTAGTGTTCAGCAGTGGATGACCTCTAGTCAAGACCTTTGCACTAGGATAGTTAATGTGAACCATGGCAACTGATCACAACAATGTCTTTCAGATCAGATCCATTTTATCCTCCTTGTTTTACAGCAAGGGATATTAATTACCTATGTTACCTTTCCCTGGGACTATGAATGTGCAAAATTCCAATGTTCATGGTCTCTCCCTTTAAACCTATATTCTACCCCTTTTACATTATAGAAAGGGATGCTGGAAACCCAGAGTCCTTCTCTTGGGACTCTTAATGTGTATTTCTAATTATCCATGACTCTTAATGTGCATATTTTCAATTGCCTAATTGATTTCAATTGTCTAAGACATTTCAAATGTCTAATTGATTAGAACTGAGTCTTTTATATCAAGCTAATATCTAGCTTTTATATCAAGCTAATATCTTGACTTCTCAGCATCATAGAAGGGGGTACTGATTTCCTAAAGTCTTTCTTGAATTTCTATTATGCAAAATTGCCCTGAGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAAGATCCCTTACTGCCAGGAGTTTGAGACCAGCCTGGCCAACATTAAAAAAAAAAAAAAGTAAGACAATTGCCCTGGAATCCCATCCCCCTCACACCTCCTTGGCAAAGCAGCAGGAGTGCTAACTAGCTAGTGCTTCTTCTCTTATACTGCTTAAATGCGCATAATTAGCAGTAGTTGATGTGCCCCTATGTTAGAGTAGAATCCCGCTTCCTTGCTCCATTTGCATTACTGCAGGAGCTTCTAACTAGCCTGAATTCACTCTCTTGGACTGTTAATGTGCATACTTATATTTGCTGCTGTACTTTTTTACCATGTAAGGACCCCACCCACTGTATTTACATCCCAGCTGGAAGTACCTACTACTTAAGACCCTTAGACTAGTAAAGTTAGCGTGCATAATCTTAGGTGTTATATACACATTTTCAGTTGCATACAGTTGTGCCTTTTATCAGGACTCCTGTACTTATCAAAGCAGAGAGTGCTAATCAATATTAAGCCCTTCTCTTCGAACTGTAGATGGCATGTAATTGCAGTTGTCAATGGTCCTTCAATTAGACTTGGGTTTCTGACCTATCACACCCTCTTTGCTTTATTGCATGGGGTACTATTCACTTAAGGCCCCTTTCTCAAACTGTTAATGTGCCTAATGACAATTACATCAGTATCCTTCCTTTTGAAGGACAGCATGGTTGGTGACACCTAAGGCCCCATTTCTTGGCCTCCCAATATGTGTGATTGTATTTGTCGAGGTTGCTATGCACTAGAGAAGGAAAGTGCTCCCCTCATCCCCACTTTTCCCTTCCAGCAGGAAGTGCCCACCCCATAAGACCCTTTTATTTGGAGAGTCTAGGTGCACAATTGTAAGTGACCACAAGCATGCATCTTGGACATTTATGTGCGTAATCGCACACTGCTCATTCCATGTGAATAAGGTCCTACTCTCCGACCCCTTTTGCAATACAGAAGGGTTGCTGATAACGCAGTCCCCTTTTCTTGGCATGTTGTGTGTGATTATAATCGTCTGGGATCCTATGCACTAGAAAAGGAGGGTCCTCTCCACATACCTCAGTCTCACCTTTCCCTTCCAGCAGGGAGTGCCCACTCCATAAGACTCTCACATTTGGACAGTCAAGGTGCGTAATTGTTAAGTGAACACAACCATGCACCTTAGACATGGATTTGCATAACTACACACAGCTCAACCTATCTGAATAAAATCCTACTCTCAGACCCCTTTTGCAGTACAGCAGGGGTGCTGATCACCAAGGCCCTTTTTCCTGGCCTGGTATGCGTGTGATTATGTTTGTCCCGGTTCCTGTGTATTAGACATGGAAGCCTCCCCTGCCACACTCCACCCCCAATCTTCCTTTCCCTTCCGGCAGGGAGTGCCCTCTCCATAAGACGCTTACGTTTGGACAATCAAGGTGCACAGTTGTAAGTGACCACAGGCATACACCTTGGACATTAATGTGCATAACCACTTTGCCCATTCCATCTGAATAAGGTCCTACTCTCAGACCCCTTTTGCAGTACAGCAGGGGTGCTGATCACCAAGGCCCCTTTTCTTGGCCTGTTATGTGCGTGATTATATTTGTCTGGGTTCCTGTGTATTAGACAAGGAAGCCTTCCCCCCGCCCCCACCCCCACTCCCAGTCTTCCTTTCCCTTCCAGCAGGGAGTGCCCCCTCCATAAGATCATTACATTTGGACAATCAAGGTGCACAATTATAAGTGACCACAGCCATGCACCTTGGACATTATTGGACATTAATGTGCGTAACTGCACATGGCCCATCCCATCTGAATAAGGTCCTACTCTCAGATGCCCTTTGCAGTACAGCAGGGGTACTGAATCACCAAGGCCCTTTTTCTTGGCCTGTTATGTGTGTGATTATATTTATCCCAGTTTCTGTGTAATAGACATGAAAGCCTCCCCTGCCACACCCCACCTCCAATCTTCCTTTCCCTTCCACCAGGGAGTGTCCACTCCATATACCCTTACATTTGGACAATCAAGGTGCACAATTGTAAGTGAGCATAGGCACTCACCTTGGACATGAATGTGCATAACTGCACATGGCCCATCCCATCTGAATAAGGTCCTACTCTCAGACCCTTTTTGCAGTACAGCAGGGGTGCTGATCACCAAGGCCCCTTTTCCTGGCCTGTTATGTGTGTGATTATATTTGTTCCAGTTCCTGTGTAATAGACATGGAAGCCTCCCCTGCCACACTCCACCCCCAATCTTCCTTTCCCTTCTGGCAGGAAGTACCCGCTCCATAAGACCCTTACATTTGGACAGTCAAGGTGCACAATTGTATGTGACCACAACCATGCACCTTGGACATAAATGTGTGTAACTGCACATGGCCCATCCCATCTGAATAAGGTCCTACTCTCAGACCCCTTTTGCAGTACAGTAGGTGTGCTGATAACCAAGGCCCCTCTTCCTGGCCTGTTAACGTATGTGATTATATTTGTCTGGGTTCCAGTGTATAAGACATGGAAGCCTCCCCTGCCCCACCCCACCCTCAATCTTCCTTTCCCTTCTGGCAGGGAGTGCCAGCTCCATAAGAACCTTACATTTGGACAGTCAAGGTGCACAATTCTAAGTGACCGCAGCCATGCACCTTGGTCAATAATGTGTGTAACTGCACACGGCCTATCTCATCTGAATAAGGCCTTACTCTCAGACCCCTTTTGCAGTACAGCAGGGGTGCTGATAACCAAGGCCCATTTTCCTGGCCTGTTATGTGTGTGATTATATTTGTCCAGGTTTCTGTGTACTAGACAAGGAAGCCTCCTCTGCCCCATCCCATCTACGCATAATCTTTCTTTTCCTCCCAGCAGGGAGTGCTCACTCCATAAGACCCTTACATTTGGACAATCAAGGTGCACAATTGTAAGTGACCACAACCATGCATCTTGGAAATTTATGTGCATAACTGCACATGGCTTATCCTATTTGAATAAAGTCCTACTCTCAGACCCCCTTTGCAGTATAGCTGGGGTGCTGATCACTGAGGCCTCTTTGCTTGGCTTGTCTATATTCTTGTGTACTAGATAAGGGCACCTTCTCATGGACTCCCTTTGCTTTTCAACAAGGAGTACCCACTACTTTTTAAGATTCTTATATTTGTCCAAAGTACATGGTTTTAATTGACCACAACAATGTCCCTTGGACATTAATGTATGTAATCACCACATGGTTCATCCTAATTAAACAAAGTTCTACCTTCTCACCCTCCATTTGCAGTATACCAGGGTTGCTGACCCCCTAAGTCCCCTTTTCTTGGCTTGTTGACATGCATAATTGCATTTATGTTGGTTCTTGTGCCCTAGACAAGGATGCCCCACCTCTTTTCAATAGTGGGTGCCCACTCCTTATGATCTTTACATTTGAACAGTTAATGTGAATAATTGCAGTTGTCCACAACCCTATCACTTCTAGGACCATTATACCTCTTTTGCATTACTGTGGGGTATACTGTTTCCCTCCAAGGCCCCTTCTGGTGGACTATCAACATATAATTGAAATTTTCTTTTGTCTTTGTCAGTAGATTAAGGTCATACCCCATCACCTTTCCTTTGTAGTACAACAGGGTGTCCTGATCAACCAAAGTCCTGTTGTTTTGGACTGTTAATATGTGCAATTACATTTGCTCCTGATCTGTGCACTAGATAAGGATCCTACCTACTTTCTTAGTGTTTTTAGCAGGTAGTGCCCACTACTCAAGACTGTCACTTGGAATGTTCATGTGCACAAACTCAATTCTCTAAGCATGTTCCTGTACCACCTTTGCTTTAGAGCAGGGGGATGATATTCACTAAGTGCCCCTTCTTTTGGACTTAATATGCATTAATGCAATTGTCCACCTCTTCTTTTAGACTAAGAGTTGATCTCCACATATTCCCCTTGCATCAGGGGCATGTTAATTATGAATGAACCCTTTTCTTTTAATATTAATGTCATAATTGTATTTGTGGACCTGTGTAGGAGAAAAAGACCCTATGTTCCTCCCATTACCCTTTGGATTGCTGCTGAGAAGTGTTAACTACTCATAATCTCAGCTCTTGGACAATTAATAGCATTAATAACAATTATCAAGGGCACTGATCATTAGATAAGACTCCTGCTTCCTCGTTGCTTACATCGGGGGTACTGACCCACTAAGGCCCCTTGTACTGTTAATGTGAATATTTGCAATTATATATGTCTCCTTCTGGTAGAGTGGGATATTATGCCCTAGTATCCCCTTTGCATTACTGCAGGGGCTGCTGACTACTCAAAACTTCTCCTGGGACTGTTAATAGGCACAATGGCAGTTATCAATGGTTTTCTCCCTCCCTGACCTTGTTAAGCAAGCGCCCCACCCCACCCTTAGTTTCCCATGGCATAATAAAGTATAAGCATTGGAGTATTCCATGCACTTGTCTATCAAACAGTGGTCCATACTCCCAACCCTTTTGCATTGCGCCAGTGTGTAAAATCACAGGTAGCCATGGTGTCATGCTTTATATACGAAGTCTTCCCTCTCTCTGCCCCTTGTGTGCCCTTGGCCCCTTTTTACAGACTATTGCTCACAATCTCAGGTGTCCATATTTGCAGCTATTAGGTAAGATTGTGCTGTCTCCCTCTTCCCTTCCCTCTGCCCTGCCCCTTTTGCCTCTTTGCTGGGTAATGTTGACCAGACAAGGCCCTTTCTCTTGGACTTAAACAATTCTCAGTTGCACTTTCCTTGGTCCCACCCATTATACATGAACCCCTCTACTTCCTTTCGCATTGCTTCTGAGTATGCTGACTACCCAAAGCCCCTTCTGTGTTATTAATAAACACAGTACTGATTGTCCCATTTTTCAGCCCATCAGTCCAAGATCTCCCTACCACTTTGGTGTGTTGGTGCAGTGTTGACTATGAAAAGCAGGCCTGAACTAGGTGGATAAGCCTTCACTCATTTTCTTTCATTTATTAATGATCCTAGTTTCAATTATTGTCAGATTCTGGGGACAAGAACCATTCTTGCCCACCTGTGTTACTGCTTTACTGTGCAAAATACTGAAGGCAAGTCAGACCCAGGGAGCTGGATTGCCATCCTTTATTTTGTGTTTCCAGTGTACACTATAAAATTGTCTCCCCAGGAAGGAAGGTTGGCACTTTCTCTGCATTCTTCTTTCCAGAGCAGATTGCCTGGTTAAGAATCTCTTGTTGTCCCCTTTGTATATTGTTATTGTAAAGTGCCAAATGCCAGGATACAGCCAGAAAAATTGCTTATTATTATTAAAAAAATTTTTTTAAGAAAGACATCTGGATTGTAGGGTGGACTCGATAACCTGGTCATTATTTTTTTGAAGCCAAAATATCCATTTATACTATGTACCTGGTGACCAGTGTCTCTCATTTTAACTGAGGGTGGTGGGTCTGTGGATAGAACACTGACTCTTGCTATTTTAATATCAAAGATATTCTAGAGTGGAACTCTTAAGACCAGTATCTTTGTGTGGGCTTTACCAGCATTCACTTTTAGAAAAACTACCTAAATTTTATAATCCTTTAATTTCTTCATCTGGAGCACCTGCCCCTACTTATTTCAAGAAGATTGCAGTAAAACGATTAAATGAGGGAACATATGCAGAGGTGCTTTTAAAAAGCATATGCCACCTTTTTTATTAATTATTATATAAAATGAAGCATTTAATTATAGTAATAATTTGAAGTAGTTTGAAGTACCACACTGAGGTGAGGACTTAAAAATGATAAGACGAGTTCCCTATTTTATAAGAAAAATAAGCCAAAATTAAATATTCTTTTGGATATAAATTTCAACAGTGAGATAGCTGCCTAGTGGAAATGAATAATATCCCAGCCACTAGTGTACAGGGTGTTTTGTGGCACAGGATTATGTAATATGGAACTGCTCAAGCAAATAACTAGTCATCACAACAGCAGTTCTTTGTAATAACTGAAAAAGAATATTGTTTCTCGGAGAAGGATGTCAAAAGATCGGCCCAGCTCAGGGAGCAGTTTGCCCTACTAGCTCCTCGGACAGCTGTAAAGAAGAGTCTCTGGCTCTTTAGAATACTGATCCCATTGAAGATACCACGCTGCATGTGTCCTTAGTAGTCATGTCTCCTTAGGCTCCTCTTGGACATTCTGAGCATGTGAGACCTGAGGACTGCAAACAGCTATAAGAGGCTCCAAATTAATCATATCTTTCCCTTTGAGAATCTGGCCAAGCTCCAGCTAATCTACTTGGATGGGTTGCCAGCTATCTGGAGAAAAAGATCTTCCTCAGAAGAATAGGCTTGTTGTTTTACAGTGTTAGTGATCCATTCCCTTTGACGATCCCTAGGTGGAGATGGGGCATGAGGATCCTCCAGGGGAAAAGCTCACTACCACTGGGCAACAACCCTAGGTCAGGAGGTTCTGTCAAGATACTTTCCTGGTCCCAGATAGGAAGATAAAGTCTCAAAAACAACCACCACACGTCAAGCTCTTCATTGTTCCTATCTGCCAAATCATTATACTTCCTACAAGCAGTGCAGAGAGCTGAGTCTTCAGCAGGTCCAAGAAATTTGAACACACTGAAGGAAGTCAGCCTTCCCACCTGAAGATCAACATGCCTGGCACTCTAGCACTTGAGGATAGCTGAATGAATGTGTATTTCTTTGTCTCTTTCTTTCTTGTCTTTGCTCTTTGTTCTCTATCTAAAGTGTGTCTTACCCATTTCCATGTTTCTCTTGCTAATTTCTTTCGTGTGTGCCTTTGCCTCATTTTCTCTTTTTGTTCACAAGAGTGGTCTGTGTCTTGTCTTAGACATATCTCTCATTTTTCATTTTGTTGCTATTTCTCTTTGCTCTCCTAGATGTGGCTCTTCTTTCACGCTTTATTTCATGTCTCCTTTTTGGGTCACATGCTGTGTGCTTTTTGTCCTTTTCTTGTTCTGTCTACCTCTCCTTTCTCTGCCTACCTCTCTTTTCTCTTTGTGAACTGTGATTATTTGTTACCCCTTCCCCTTCTCGTTCGTTTTAAATTTCACCTTTTTTCTGAGTCTGGCCTCCTTTCTGCTGTTTCTACTTTTTATCTCACATTTCTCATTTCTGCATTTCCTTTCTGCCTCTCTTGGGCTATTCTCTCTCTCCTCCCCTGCGTGCCTCAGCATCTCTTGCTGTTTGTGATTTTCTATTTCAGTATTAATCTCTGTTGGCTTGTATTTGTTCTCTGCTTCTTCCCTTTCTACTCACCTTTGAGTATTTCAGCCTCTTCATGAATCTATCTCCCTCTCTTTGATTTCATGTAATCTCTCCTTAAATATTTCTTTGCATATGTGGGCAAGTGTACGTGTGTGTGTGTCATGTGTGGCAGAGGGGCTTCCTAACCCCTGCCTGATAGGTGCAGAACGTCGGCTATCAGAGCAAGCATTGTGGAGCGGTTCCTTATGCCAGGCTGCCATGTGAGATGATCCAAGACCAAAACAAGGCCCTAGACTGCAGTAAAACCCAGAACTCAAGTAGGGCAGAAGGTGGAAGGCTCATATGGATAGAAGGCCCAAAGTATAAGACAGATGGTTTGAGACTTGAGACCCGAGGACTAAGATGGAAAGCCCATGTTCCAAGATAGATAGAAGCCTCAGGCCTGAAACCAACAAAAGCCTCAAGAGCCAAGAAAACAGAGGGTGGCCTGAATTGGACCGAAGGCCTGAGTTGGATGGAAGTCTCAAGGCTTGAGTTAGAAGTCTTAAGACCTGGGACAGGACACATGGAAGGCCTAAGAACTGAGACTTGTGACACAAGGCCAACGACCTAAGATTAGCCCAGGGTTGTAGCTGGAAGACCTACAACCCAAGGATGGAAGGCCCCTGTCACAAAGCCTACCTAGATGGATAGAGGACCCAAGCGAAAAAGGTATCTCAAGACTAACGGCCGGAATCTGGAGGCCCATGACCCAGAACCCAGGAAGGATAGAAGCTTGAAGACCTGGGGAAATCCCAAGATGAGAACCCTAAACCCTACCTCTTTTCTATTGTTTACACTTCTTACTCTTAGATATTTCCAGTTCTCCTGTTTATCTTTAAGCCTGATTCTTTTGAGATGTACTTTTTGATGTTGCCGGTTACCTTTAGATTGACAGTATTATGCCTGGGCCAGTCTTGAGCCAGCTTTAAATCACAGCTTTTACCTATTTGTTAGGCTATAGTGTTTTGTAAACTTCTGTTTCTATTCACATCTTCTCCACTTGAGAGAGACACCAAAATCCAGTCAGTATCTAATCTGGCTTTTGTTAACTTCCCTCAGGAGCAGACATTCATATAGGTGATACTGTATTTCAGTCCTTTCTTTTGACCCCAGAAGCCCTAGACTGAGAAGATAAAATGGTCAGGTTGTTGGGGAAAAAAAAGTGCCAGGCTCTCTAGAGAAAAATGTGAAGAGATGCTCCAGGCCAATGAGAAGAATTAGACAAGAAATACACAGATGTGCCAGACTTCTGAGAAGCACCTGCCAGCAACAGCTTCCTTCTTTGAGCTTAGGTGAGCAGGATTCTGGGGTTTGGGATTTCTAGTGATGGTTATGGAAAGGGTGACTGTGCCTGGGACAAAGCGAGGTCCCAAGGGGACAGCCTGAACTCCCTGCTCATAGTAGTGGCCAAATAATTTGGTGGACTGTGCCAACGCTACTCCTGGGTTTAATACCCATCTCTAGGCTTAAAGATGAGAGAACCTGGGACTGTTGAGCATGTTTAATACTTTCCTTGATTTTTTTCTTCCTGTTTATGTGGGAAGTTGATTTAAATGACTGATAATGTGTATGAAAGCACTGTAAAACATAAGAGAAAAACCAATTAGTGTATTGGCAATCATGCAGTTAACATTTGAAAGTGCAGTGTAAATTGTGAAGCATTATGTAAATCAGGGGTCCACAGTTTTTCTGTAAGGGGTCAAATCATAAATACTTTAGACTGTGGGCCATATGGTTTCTGTTACATATTTGTTTTTTAAACAACGTTTTTATAAGGTCAAAATCATTCTTAGTTTTTGAGCCAATTGGATTTGGCCTGCTGTTCATAGCTTACCACCCCCTGATGTATTATTTGTTATTCAGAGAAAATTTCTGAATACTACTAGTTTCCTTTTCTGTGCCTGTCCCTGTGCTAGGCACTAAAAATGCAATGATTATTGATATCTAGGTGACCTGAAAAAAAATAGTGAATGTGCTTTGTAAACTGTAAAGCACTTGTATTCTACTGTGATAAGCGTTGTGGATACAAAGAAAGGAGCAAGCATAAAAAAGTGCTCTTTCAAAAGGATATAGTACTATGCAGACACAAGGAATTGTTTGATAAATGAATAAATTATATGTATATTTGAGGCCAATTTGTGTTTGCTGCTCTGGTAATTTTGAGTAAAAATGCAGTATTCCAGGTATCAGAAACGAAAACACATGGAAACTGCTTTTAAACTTTAAAATATACTGAAAACATAAGGGACTAAGCTTGTTGTGGTCACCTATAATGTGCCAGATACCATGCTGGGTGCTAGAGCTACCAAAGGGGGAAAAGTATTCTCATAGAACAAAAAATTTCAGAAAGGTGCATATTAAAGTGCTTTGTAAACTAAAGCATGATACAAATGTCAATGGGCTACATATTTATGAATGAATGAATGGATGAATGAATATTAAGTGCCTCTTACATACCAGCTATTTTGGGTACTGTAAAATACAAGATTAATTCTCCTATGTAATAAGAGGAAAGTTTATCCTCTATACTATTCAGATGTAAGGAATGATATATTGCTTAATTTTAAACAATCAAGACTTTACTGGTGAGGTTAAGTTAAATTATTACTGATACATTTTTCCAGGTAACCAGGAAAGAGCTAGTATGAGGAAATGAAGTAATAGATGTGAGATCCAGACCGAAAGTCACTTAATTCAGCTTGCGAATGTGCTTTCTAAATTATAAAGCACTTGTAAATGAAAAATTTGATGCTTTCTGTATGAATAAAACTTTCTGTAAGCTAGGTATTGTCTCTACAAAATTCTCATTGTATAGTTAAACCACAGTGAGAAGGGTTCTATAAGTAGTTATACAAACCAAGGGTTTAAATACCTGTTAAATAGATCAATTTTGATTGCCTACTATGTGAACTCACTGTTAAAGGCACTGAAAATTTATCATATTTCATTTAGCCACAGCCAAAAATAAGGCAATACCTATGTTAGCATTTTGTGAACTCTAAGGCACCATATAAATGTAACTGTTGATTTTCTCACTTGGTGCTGGGTACTAGGTTTATAAAATTGTATGATAGTTATTATATTGTGCAAATAAAGTAGGAAAATTTGAATAACAATGATTATCTTTTGAATACGCATACGCAAGGGATTGGTTGTCTGAAGAATGCCACTATAGTAGTTATCTATTGTGTGCCAATCTCATTGCTAGGCATTGGGGATGCAAAGATAAACCATCTTTATTGTGTCTTGGGTAGCAGAAGAAAATATGTGTAAAATCAATTTATAATTTGTAAACTGCCACCCATATATAAGCTATATCTGCTGAATGATCATTGATTACTCTTATCCTTAGAGATAACAACTGGGGGCACAAACATTTATTATCATTATTGAACCTACAACAGAGATCTATGTGTAGATTTACAAAGCCTACAGTTCTATACAGATAGGAATGAACTATTGGCTTACTGAATGGTGATTACTTTCTGTGGGGCTCGGAACTACATGCCCTAGGATATAAAAATGATGTTATCATTATAGAGTGCTCACAGAAGGAAATGAAGTAATATAGGTGTGAGATCCAGACCAAAAGTCATTTAACAAGTTTATTCAGTGATGAAAACATGGGACAAATGGACTAATATAAGGCAGTGTACTAAGCTGAGTAGAGAGATAAAGTCCTGTCCAGAAGATACATGCTTCCTGGCCTGATTGAGGAGATGGAAAATTTTTGCAAAAAACAAGGTGTTGTGGTCTTCCATCCAGTTTCTTAAGTGCTGATGATAAAAGTGAATTAGACCCACCTTGACCTGGCCTACAGAAGTAAAGGAGTAAAAATAAATGCCTCAGGCGTGCTTTTTGATTCATTTGATAAACAAAGCATCTTTTATGTGGAATATACCATTCTGGGTCCTGAGGATAAGAGAGATGAGGGCATTAGATCACTGACAGCTGAAGATAGAAGAACATCTTTGGTTTGATTGTTTAAATAATATTTCAATGCCTATTCTCTGCAAGGTACTATGTTTCGTAAATTAAATAGGTCTGGCCCAGAAGACCCACTCAATTGCCTTTGAGATTAAAAAAAAAAAAAAAAAGAAAGAAAAATGCAAGTTTCTTTCAAAATAAAGAGACATTTTTCCTAGTTTCAGGAATCCCCCAAATCACTTCCTCATTGGCTTAGTTTAAAGCCAGGAGACTGATAAAAGGGCTCAGGGTTTGTTCTTTAATTCATTAACTAAACATTCTGCTTTTATTACAGTTAAATGGTTCAAGATGTAACAACTAGTTTTAAAGGTATTTGCTCATTGGTCTGGCTTAGAGACAGGAAGACATATGAGCAATAAAAAAAAGATTCTTTTGCATTTACCAATTTAGTAAAAATTTATTAAAACTGAATAAAGTGCTGTTCTTAAGTGCTTGAAAGACGTAAACCAAAGTGCACTTTATCTCATTTATCTTATGGTGGAAACACAGGAACAAATTCTCTAAGAGACTGTGTTTCTTTAGTTGAGAAGAAACTTCATTGAGTAGCTGTGATATGTTCGATACTAAGGAAAAACTAAACAGATCACCTTTGACATGCGTTGTAGAGTGGGAATAAGAGAGGGCTTTTTATTTTTTCGTTCATACGAGTATTGATGAAGATGATACTAAATGCTAAATGAAATATATCTGCTCCAAAAGGCATTTATTCTGACTTGGAGATGCAACAAAAACACAAAAATGGAATGAAGTGATACTCTTCATCAAACAGAAGTGACTGTTATCTCAACCATTTTGTTAAATCCTAAACAGAAAACAAAAAAAATCATGACGAAAAGACACTTGCTTATTAATTGGCTTGGAAAGTAGAATATAGGAGAAAGGTTACTGTTTATTTTTTTTCATGTATTCATTCATTCTACAAATATATTCGGGTGCCAATAGGTACTTGGTATAAGGTTTTTGGCCCCAGAGACATGGGAAAAAAATGCATGCCTTCCCAGAGAATGCCTAATACTTTCCTTTTGGCTTGTTTTCTTGTTAGGGGCATGGCTTAGTCCCTAAATAACATTGTGTGGTTTAATTCCTACTCCGTATCTCTTCTACCACTCTGGCCACTACGATAAGCAGGTAGCTGGGTTTTGTAGTGAGCTTGCTCCTTAAGTTACAGGAACTCTCCTTATAATAGACACTTCATTTTCCTAGTCCATCCCTCATGAAAAATGACTGACCACTGCTGGGCAGCAGGAGGGATGATGACCAACTAATTCCCAAACCCCAGTCTCATTGGTACCAGCCTTGGGGAACCACCTACACTTGAGCCACAATTGGTTTTGAAGTGCATTTACAAGGTTTGTCTATTTTCAGTTCTTTACTTTTTACATGCTGACACATACATACACTGCCTAAATAGATCTCTTTCAGAAACAATCCTCAGATAACGCATAGCAAAATGGAGATGGAGACATGATTTCTCATGCAACAGCTTCTCTAATTATACCTTAGAAATGTTCTCCTTTTTATCATCAAATCTGCTCAAGAAGGGCTTTTTATAGTAGAATAATATCAGTGGATGAAAACAGCTTAACATTTTACCATGCTTAAGTTTTAAGAATAAAATAAAAATTGGAAATAATTGGCCAAAATTGAAAGGAAAAATTTTTTTAAAATTTCTCTAAATGTAGGCCTGGCTGGGCTTTGACCTTTTCCGTTTTTAAATCACTCACAGAGGGTGGGACAGGAGGAAGAGTGAAGGAAAAGGTCAAACCTGTTTTAAGGGCAACCTGCCTTTGTTCTGAATTGGTCTTAAGAACATTACCAGCTCCAGGTTTAAATTGTTCAGTTTCATGCAGTTCCAATAGCTGATCATTGTTGAGATGAGGACAAAATCCTTTGTCCTCACTAGTTTGCTTTACATTTTTGAAAAGTATTATTTTTGTCCAAGTGCTTATCAACTAAACCTTGTGTTAGGTAAGAATGGAATTTATTAAGTGAATCAGTGTGACCCTTCTTGTCATAAGATTATCTTAAAGCTGAAGCCAAAATATGCTTCAAAAGAAGAGGACTTTATTGTTCATTGTAGTTCATACATTCAAAGCATCTGAACTGTAGTTTCTATAGCAAGCCAATTACATCCATAAGTGGAGAAGGAAATAGATAAATGTCAAAGTATGATTGGTGGAGGGAGCAAGGTTGAAGATAATCTGGGGTTGAAATTTTCTAGTTTTCATTCTGTACATTTTTAGTTAGACATCAGATTTGAAATATTAATGTTTACCTTTCAATGTGTGGTATCAGCTGGACTCAGTAACACCCCTTTCTTCAGCTGGGGATGGGGAATGGATTATTGGAAAATGGAAAGAAGAAAGTAACTAAAAGCCTTCCTTTCACAGTTTCTGGCATCACTACCACTACTGATTAAACAAGAATAAGAGAACATTTTATCATCATCTGCTTTATTCACATAAATGAAGTTGTGATGAATAAATCTGCTTTTATGCAGACACAAGGAATTAAGTGGCTTCGTCATTGTCCTTCTACCTCAAAGATAATTTATTCCAAAAGCTAAGATAAATGGAAGACTCTTGAACTTGTGAACTGATGTGAAATGCAGAATCTCTTTTGAGTCTTTGCTGTTTGGAAGATTGAAAAATATTGTTCAGCATGGGTGACCACCAGAAAGTAATCTTAAGCCATCTAGATGTCACAATTGAAACAAACTGGGGAGTTGGTTGCTATTGTAAAATAAAATATACTGTTTTG</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-EIF3M-1:1&diff=890587Lnc-EIF3M-1:12014-10-11T01:34:35Z<p>124.202.190.20: </p>
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<div>Please input one-sentence summary here.<br />
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==Annotated Information==<br />
===Name===<br />
WT1-AS: WT1 (Wilms' tumor 1) antisense transcript.<br />
<br />
===Characteristics===<br />
0.4 - 3kb, spliced and present in multiple splicing isoforms [http://www.ncbi.nlm.nih.gov/pubmed/17940140 (Dallosso (2007))], as well as a protein coding isoform (WIT1) transcribed from a downstream promoter ([http://www.ncbi.nlm.nih.gov/pubmed/8208551 Eccles (1994)],[http://www.ncbi.nlm.nih.gov/pubmed/8290269 Campbell (1994)]). Transcribed antisense to WT1 from intron 1 or from the same promoter region (bidirectional) of WT1, corresponding to a differentially methylated regulatory region ([http://www.ncbi.nlm.nih.gov/pubmed/8208551 Eccles (1994)],[http://www.ncbi.nlm.nih.gov/pubmed/7478583 Malik (1995)],[http://www.ncbi.nlm.nih.gov/pubmed/10811108 Malik (2000)]).<br />
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===Function===<br />
WT1-AS transcripts are exported to the cytoplasm and form heteroduplexes with WT1 mRNA, with a proposed regulatory role in WT1 expression via RNA:RNA interactions [http://www.ncbi.nlm.nih.gov/pubmed/17940140 (Dallosso (2007))].<br />
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===Expression===<br />
Imprinted in humans (but not in mouse), with monoallelic (paternal) expression in normal kidney ([http://www.ncbi.nlm.nih.gov/pubmed/10811108 Malik (2000)],[http://www.ncbi.nlm.nih.gov/pubmed/14681303 Dallosso (2004)],[http://www.ncbi.nlm.nih.gov/pubmed/17940140 Dallosso (2007)]). Co-regulation with WT1 during mouse kidney development, and co-expression in mouse and human tissues, including fetal spleen, fetal kidney, and normal kidney [http://www.ncbi.nlm.nih.gov/pubmed/17940140 (Dallosso (2007))]. Abnormal splicing of WT1-AS has been reported in acute myeloid leukaemia (AML) samples [http://www.ncbi.nlm.nih.gov/pubmed/17940140 (Dallosso (2007))].<br />
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===Conservation===<br />
WT1 has a positionally conserved antisense/bidirectional transcripts in mouse and humans, although WT1-AS RNAs do not show extensive sequence conservation between these species, except at their 5' ends, which may extend into WT1 exon 1 [http://www.ncbi.nlm.nih.gov/pubmed/17940140 (Dallosso (2007))].<br />
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===Misc===<br />
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===Transcriptomic Nomeclature===<br />
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===Regulation===<br />
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===Allelic Information and Variation===<br />
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===Evolution===<br />
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==Labs working on this lncRNA==<br />
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==References==<br />
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{{basic|<br />
tID = lnc-EIF3M-1:1|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intergenic|<br />
length = 2354 nt|<br />
location = chr11+:32457284..32461620|<br />
number = ,|<br />
exons = ,|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr11:32457284..32461620&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>AACCCAACACGCGCTCTCAGCTGGCCGGTGTGGCACAACCCTCCCCCCACCTCCCCTTCTTGGCCTTCGCCAGTGTGGGAGCCTCGTCTCACTGGAGAGTCCGTTCAGAATCCTTGTGGGGGCGGGGAGGGGAAGAGCACCGGTGCGAACCCCGGGGTGCCCCCTCGCCCGACTTGGACTTCTCCGACTAAAGAGGTGGGAGGAGTTCCCTGCAGCCTGCGGGGCCAAGAAGAAAGTGCTAAGCTGAGGAGCCGCAGTCGGAGGACCCCAGGGACCCGACAGGAAGTCTCCGTACGACCCCAACGGATCCACATGCCCGGAAGCCCAGGCGACACTAAGCCAGCGCTGGGGAACTGACGTACTCCTGCAGTCGCAGGGCGCTCCATGCCTCTCTGTCCTCTTCTTTGTTGTGGGTAACGTTCTCTGCGGGAGACCTGAGGTTTTCCAAGGGGGACATGCCAGCTACACTGGCCTTGGCGCCCTGAGCTAAGCACCAGGACTCACAGCCTAGCACGAAGGCAGGTAGCACCTTCACCCGCCGCGGACGATAGGCGCTCTCCTGTACCTCCTTTAGCTCGCGAGGCCCGCCCTTCGCGAGGTCCCAGAGAAAAGCAGGCTGTGGAAAACTGGGCGCCCCCTTCTTTCACCCACCTTCTTACCCCTGTCAGCGCCGAGATCTGTAGCAGAGGTTCCTGGTCTGAACCACCGATTGGCAAAGAAAGCTGCAGATTAAACTTCTCGTTTTACAGAGAAGGAAACTGAGGCCCAGACAGCCGAAGGAGAGGCAGTCTATGGAGCGCAGCGGTAAAGAGCAAGGGGTTGGTGGCCCCAGAATGGAACCTCAGCTCTGCCAGGTAACCAACAGCTGTGTGACCCTAGACGAGTTCCGCAGTCTCTCTGAGCCTCAGTTTCCTTACTGGTCAAACGGGATAATGGGATACTAGCGCCCACCTCATAGAGTTGTTCTGAGGATTAGATAGGAGAGCAGTGTGGGCCTTTGACTCAATCAACTTTACAGTTTTTGTTACTACTACTGTTTAAGGACAGGAAACAAGTTAGTGGCAACGCCGAGCTGAAACCCGGGTCTCTCAACGTCCAGTTGGAGGTTTTACCCACCACCCCTCTACCTCTTCAGAGCTAATGGGATGCAGAGGCGAGGACAGCCCCTGGAAAACCATGTGGCGTTGATACACTGGCAAAGCGCAGGCATCCCGGCCTCGAAGGTGCATAATTATTGCAATATGAAAAAATCGAGGCTGGGTAGGAGCAGGGCAGTGAGGATTTCTCAACCCTTACTTTCACCCCGGCGCTGTCCACTGCATCTGACAGAGCGCGGAGCTGGGCTGCTACAGCCGCAACCCCAGGGACCAGTGCGCACGCCTGGGCCGCCCTCCGGGAGTCACCCAGCGGCCGCGGACAACTGAATAAACACCCCAAAGCGCTGCGGTCGGTCAAGGGCGGGGACAGCCACACTGCGCGCGGGGCCCGCAGGCCGTAATAAAGAGTGGCTCGACCTCGCTGCTGCCTGTCGCGGGAGAGGAACAAGCTTTCGACTAGCGCCTCTCCCCGGGGCCCGCGCCCCGAGCCCCACGCGCAAGACAGCCCAACAGCTGTTCCTCCCCTCCCCGCCGACTCCAACTCTTCGGAATCTGCCCACTCGGGGCTGCAGGGCAAGTGTTTAGGATGGTTCCCAGCCCCGCGCTGGCGGTGAAAATTTCAACGTCATTCCTTCAATTAAAAAAAGGGGGGGGCAAGGGAGGGGCTTTGTGATAACTACTCCCAGCTTCTTCTGATCATTTCAAAATTAAGTCGATTTTTTTTAACCAGTCCCCACTTACTGTCCTAACTCTCCTCGCTGACCCTATCTGGGAGCCCGGAACCGTTAGGTACTGCCGAATGCGGTGCAAAATTTCCCCCTCTCCCCCAGTTCGCAGTGCCTGGAGCCGCTGGGGTTACTCGTCTGTTCTGATGCCACCGCGAGATGGTCCCCGAGCTCCCCGAGAGTCCTCAGTGAAAGGATTCCGCGGCACTGCCTCTATTATTATACCGTAAATCTTTTTAAATTCTGGAACTAATTATATAGAGGATATGTCTCAATTTGTTCTGCATTAATGCCACAGTGGGGATGGAGGCCAGGCCGTGGCCAGAGCAGATACGTAGGCCCATGAAATTGATGAACTGAGAGTTGCTTCCAGTCCTGAGCGCACCATCTGGAATTCCAGTCTGAGGTTACAATTAGAACTCCTGACCCCAGATTCAACTTTGCAAACAACAGGGGAAAAAAATGGGGAAAAGAAAAACCACGAGAGAGGGAAAAAAAATTATTCTGCACCTGTAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-OR10H5-1:1&diff=890586Lnc-OR10H5-1:12014-10-11T01:33:14Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Cancer up-regulated drug resistant (CUDR). Urothelial cancer associated 1 (UCA1)<br />
<br />
===Characteristics===<br />
Spliced and polyadenylated with 3 exons [http://www.ncbi.nlm.nih.gov/pubmed/18501714 (Wang (2008))]. Multiple isoforms (1.4kb, 2.2kb and 2.7kb). The 2.2kb isoform contains an extended final exon compared to the 1.4kb isoform while the 2.7kb isoform has not been characterised ([http://www.ncbi.nlm.nih.gov/pubmed/16914571 Wang (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17416635 Tsang (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/18501714 Wang (2008)]). Sequence is mainly repeat elements. Initiates in an LTR, exons sample pieces of a HERV-H element and longer 2.2kb isoform contains a second LTR at the 3' end [http://www.ncbi.nlm.nih.gov/pubmed/16914571 (Wang (2006))].<br />
<br />
===Function===<br />
Functions of 1.4kb and 2.2kb isoforms have been investigated, both appear to promote and enhance tumourigenesis ([http://www.ncbi.nlm.nih.gov/pubmed/17416635 Tsang (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/18501714 Wang (2008)]). Over-expression of 1.4kb isoform enhanced tumorigenic behavior of bladder cancer cells in-vitro and in-vivo. Increased drug resistance and cell motility [http://www.ncbi.nlm.nih.gov/pubmed/18501714 (Wang (2008))]. Overexpression of 2.2kb isoform caused resistance to drug induced apoptosis, potentially by downregulation of caspase 3 levels [http://www.ncbi.nlm.nih.gov/pubmed/17416635 (Tsang (2007))]. 2.2kb isoform promoted transformation in-vitro, possibly because resistance to apoptosis is an important step in tumourigenesis [http://www.ncbi.nlm.nih.gov/pubmed/17416635 (Tsang (2007))].<br />
<br />
===Expression===<br />
Widely expressed in embryonic development [http://www.ncbi.nlm.nih.gov/pubmed/18501714 (Wang (2008))] and placenta [http://www.ncbi.nlm.nih.gov/pubmed/16914571 (Wang (2006))]. Low or no expression in normal adult tissue but highly upregulated in cell lines resistant to drug induced apoptotic cell death and bladder, colon and lung cancer ([http://www.ncbi.nlm.nih.gov/pubmed/16914571 Wang (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17416635 Tsang (2007)]). Identified as a biomarker for bladder cancer [http://www.ncbi.nlm.nih.gov/pubmed/16914571 (Wang (2006))].<br />
<br />
===Conservation===<br />
Found in humans. May be present in other primates but not in more distantly related mammals [http://www.ncbi.nlm.nih.gov/pubmed/18501714 (Wang (2008))].<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
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<br />
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<br />
==Labs working on this lncRNA==<br />
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<br />
==References==<br />
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<br />
{{basic|<br />
tID = lnc-OR10H5-1:1|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intergenic|<br />
length = 1441 nt|<br />
location = chr19+:15939770..15947051|<br />
number = ,|<br />
exons = ,|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr19:15939770..15947051&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>TGACATTCTTCTGGACAATGAGTCCCATCATCTCTCCACCATGCACCTTGTGACTCCCTCCTCTGCTGACAACAGATAACCACCTTTAACTGTAACTTTCCACAGCCTACCCCAGCCCTATAAAGCTGCCCCTCTCCTATCTCCCTTCGCTGACTCTCTTTTCAGACTCAGCCCACTTGCACCCAAGTGAATTAACAGCCTTGTTGCTCACACAAAGCCTGTTTAGGTGGTCTTCTATACGGACATGCTTGACACTTGGTGCCAAAATCTGGGCCAGGGGGACTCCTTCGTGAGACCGGCCCCCTGTCCTGGCCCTCATTCCGTGAAGAGATCCACCTGCGACCTCGGGTCCTCAGACCAGCCCAAGGAACATCTCACCAATTTCAAATCGGATCTCCTCGGCTTAGTGGCTGAAGACTGATGCTGCCCGATCGCCTCAGAAGCCCCTTGGACCATCACAGATGCCGAGCTTCGGGTAACTCTTACGGTGGAGGATTCCCAGCCATATGAAGACACCCTAGCTGGACGATCAGTCCTTGTCAAAAGTCTGACCCCTCAAACTCTACAGCCTCAATGGACCAGACCCTACCCGGTCATTTATAGCACACCAACTGCCGTCCATCTGCAGGACCCTCTCCATTGGGTTCACCATTCCAGAATAAAGCCATGCCCATCAGACAGCCAGCTTGATCTCTCCTCTTCCTCCTGGAAGCCACAAGATTAGGCCGAGAGCCGATCAGACAAACAACCTACAACCCTTAAGCTCCTGGCAGCGCCCAGCCAAGGCCATGCTTCCATGCAACACTCCTTCCAAATGGCCATCCCAGCATGCTTCCAAGCAGGCTTCATCCGTTCCTCTGGACCCTCATCTCTTAAGACCTGCCGCCTATAAAAAGGATTATATCTTGAGACCCTATCCTCTAAAATTTTTTCCACACCCAAAACAAAAAATCTCTGGGTCAAAAGTCTAAAACGCTTAGGCTGGCAACCATCAGATCCTTGCCCATGGTGTCCTCAAGCCTACTCTCATGAAATGGACAACAGTACACGCATATGGGGCCAGTTCCACATATTTGGCAACCAGACCAGCATCCAGGACAACACAAAGTATGTTGTTTGTTGTTAGAGGGCTTGGGACATTTCACTCTTTGCCAGCCTCAGCTTAATCCAGGAGACAAAGATTATTTTCCTTATTATCTCTTCTGCATAGGATCTGCAATCAGAACTATTGAACTTCTCCATTCAGACCGCCACTCACACCTATGGGAAAAGGGTAATGTATCATCGGCTTAGCAACAGGGAATACTATTCGTATGATGGAAAATGGGGACAAAAGGCTTTGGTACATAAAACATTATTCCTTCCTTGGCCTAAAAACTCATCGCCACCTACATTAAAGCTAATATGCCTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT095745&diff=890585NONHSAT0957452014-10-11T01:31:46Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
UM9-5<br />
<br />
===Characteristics===<br />
Found in an intron of KCNIP4 in the sense direction. ~2.3kb clones were identified in pig and human. NCRNA00099 which contains UM9-5 is ~10kb. Given it's position in an intron the full length of the transcript is somewhat unclear, cloning gave shorter transcripts, while transcription could be detected over whole NCRNA00099 site (but not outside it) in human. Transcript contains a number of repeats.<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Identified as a RNA that is more highly expressed in adult brain than fetal brain. Expression in human and pig was similar. Mostly restricted to adult brain, highest expression in cerebellum. Low expression was also detected in porcine embryonic tissues.<br />
<br />
===Conservation===<br />
Transcripts identified in pig and human. Southern blotting also could identify a homologous sequence in cow but not in rodents.<br />
<br />
===Misc===<br />
KCNIP4 is a voltage-gated potassium (Kv) channel-interacting protein which is expressed in brain. UM9-5 accessions: AY072607, AY072608, AY072609, AY072610 and AY072611.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
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<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT095745|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 9848 nt|<br />
location = chr4-:21844964..21854811|<br />
number = 1|<br />
exons = 21844964..21854811|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr4:21844964..21854811&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CTATGAGTCTGGCAGGAAGCTGAACAGTTTTACAAATTAGGCAATCAAGACTCAGGATTTAAGTGACTTGGACTGAACTGGCTCAATTTCTTCAAATATAGAGAGTACAAAGAAACCTGGTCAATCTTACTACTGTCCTTGAAAGAATGTTTTTTCCTAATTCAGCAAGGCAAAACTGTTAGCAAAAGTGTTCTTCAACAAGGGATCTGTGATTGTATGTTAAAAAGCTTTCTCTAAGGTACTTATCACTTAAGTAACAATGACCTGATTCATTTTTGTTTTTTGTGGGGAATTGTAACAGTAAGGAAATCATGGTTCTTCACTGTTTTAGTGAGATAGGTGAATTTTGGAATTGTGTACCAACTGAGGTAAGGCAAAAGTCTACAGTAAAACTGTTAGAATTCTACTTAAAAATATGAATAGAAAATGCAGAAAATCAGTAAATAAAAATAAATCTACAGACCAGTTGCATGCAGAGTGAGTTTGAATGTGTCATGTATGATGCTGAGTTACTGATGTGACTCTGAGCACATGTGACTCTGTGGGCTCACCCCATAGGACTTGGTATTCTCTGCTGGGTTCACACTATCTCTAATTAGGGAACATTTAAGCTTATGTTTACTGTGTTAGAGAACATCGACTTAAATCTACCCTATTAACAAATAGAGTTTCTCAGGTTGTTTTGTTGCTTTGCTCTGCCGAAGTTCAATTTAGACCATTTCTAATTAAATTAAACGTGAATGAGAGAAGACTGTTAGAAGAGGTAAACATTCTCAGTTCTTCCAGAATTCTTCCTAAAAAGTAGCTGAACCACCCTTTCCCTGGGGTTTAGCAGAGATTGTGAGTTGCCTCATGGAAGGCAGGGGCCATGCTTTATTGACAATATTTATTTCCAGAACCTCAATGAGGACAAAGCTTATAAAAAGCATTCAGTACACACTGGCTGAATAAACCAATGAGCTGCAGTCTGGAAGCCTTCCCGGGACAGACTCTCTGGACTTTAGTAAAATAGAGAGCTTCCTTGGAGGTCCCCACACACTTATCTTGACAGTGACCTTATTGGTTTGTAATGAATTGTTGATGTTTCTTTCCCACTAGAAAATTATCTCCCAGAAGTTATTTTTTGTCAGCTGTGAATCTCTATAATCTGTGAACACACACACACACACACACACACACACACACACACACATATTAATTGAATTGTAGAGGTTTTTTATGTCTAGACTTCTTATACTAAGAGGGTACCATAGACAGCATATAGGCATGAAACAATTAACTCAAAAGCAAAAATTTTATTAAGACAGAACTGAGACGAGGGTTCCAGTATCTTGAGAGTCTCCCCTGGCCAGTGTTTCTTGTCTCCTTCACCTATGCACCCATCTGACAATTTAAAAAACTAAAGCTTGGAGATTCATGTTGGCAATTTTTTATTATTAGTGTACGTGGTATATATAGCTTTTCCGCAATTTGGTTGGAGAAATGTTTTGCTAGCTTCCCAGAAACTAGCAGCCTTCACCAAAGTGGGGGCTGTCTTAAGGTGTGCCCCCTTACCTTGGGATAAAGCTATGTGCTATGGAATCACACAAGCCCGTGTTTGTATTTTTTTCATTTTAATTTTTAAACACTTGCATAAAATTAAGGGGTAAAGTGCAGTTTGGCTTCATGGATCTATTGCTTTAGGGGAAGTCTGGGCTTTTAGAGTGACCATCACTTGCATAATGTACATTGTACCCATTAAGTAATTTCTCATCCCTCAACCCCTTCCAACCTCCAACCCTTCTTAGTCTCTAGTGTGATTGTTCCACACTCTACATCCACATTATTTAGCTCTCCCTTATTTAGCTCCCCTGTATACATTATTTAGCTCCCCCTTATGAATGAGAACATGCAGTGTTGGATTTTCAGAAAGCCTTTCTGAGCCTTGGTTTTCTCATCTGTGTAAGTGGGATTTGAATGCCTTCCTGAGGGACTCTCAACCCTAGCTTAACCCCTCTCCTCTCCTCCCTCCCTGCACTAATGCCTGTGGCTCTCTTCTGTCTGCTAGGGTGGGATCGAAAGTTAAAAATATCAGCATATTTCAACCTTATTTCAGTTTTCTTGACATTGTTTTAGAAACTTGAGTGTTACTCCTCCCTTTACCACAGCTAGGTTATCGTGTTCTTTCACAGTGCTTTTAGTGTTTTTTTTCCTATGTCATTATGTTCTGTGTTAGTCTGCCCCGCAAGACTCTAAGCTTTATGATGATTAGAGACTTTGTCTGCTTTATTTATGCATGCCTAACAATCAGTTTTGAATCTTGCACAAATGTTGAGTGCACGGTTAATGAGGGAATATGTAGTGTTTGGGTTAAAAGGCATGAGCTCCACAGCAAGCCTGAGCGTGGAGTCAGTGAGCTGAGGTGAATGGGACCATCTCCAGTTTCAAGATGATCTTATCGGGATCAAACTGATGTAAAAAATCTTATTTTGTACTACAATAAAAGTTTAAAACTGAAAAAAAATCATGTAATTGAAATTAAATGAGCTTTTTTTGTTTTCTGTGGTTCATAACAAAATACTTGAAACTGGGCAGTTTATAAAGAAAAGGAATTTATTTCTTACAGTTATGGAGGTTGAAAAGTCCAAGGTTGAAGGGACTTCTTGCTGGTAGGGACTCTCTGTAGAGTCCCGAGGTGACACAGGGCATCACACGGTGAGGGGCTGAGCATGTTAGCTTAGTTCTCTCTTCCTCTTCTTATGAAGCCACTGGTCCCATGCCATTAAAACCCATTAAACCATTAACCCAGGAATTAAGTTTCAACATGAGTTTTGGAGGCGACAAATATTCAAATCATAGCATTGATTTGAATATTTGTAGGGCTCTACAACAAGGCCACTGTGTCACCCAGGTTAGTAACCAATAAAACATACATTTTTCATTAGTGTCTCTCAGTTGCTGAAGTATGAGGACCCTGACTGATAGCTTTCATCTGTATTATTGGTGGTCGGGATGATATTATTTTATATGTCCTAAACAGCACCAAATATAAAGATCTCTATAATGTCCTTAAATTTTTTTTTTAATTTAGCTTTTAAAGTTATTTGAGGTTTGTAGATTTTGCTGTTTATCTCACAAAATAACTCTGTTTCAGTTACTCTGTCTTGGACTTACTATTTTCACCAGTTGAAATGTGTTGTAGGAATACTGGATGGAATTCAGCATATGTAAGTTCTAGGCCCATTTTTCTTTTTTAGCAAATAAGCTTTGCCATTATAGTTACATTTACATTACTTATGCCCTGAAGGCCTAAGTCTTATTTGTGTAGTGAATAGGAACACACACACACACAGACACACAGACACACACACATTTATCAAAATTTGATAATATGTAATTAATTTAGTATTATCAACTTGGGAATTACTGAATTCTTTTGCTGTGCATAAAGATTATTGAAGAGCAGCATCTACTCCCTTAGAATTTTCACATCTAGTATTCTTTCTTTATATTGTTAAAATAATTTTAATAATGATCTAAATTGGATATAAATTCAGGTAATTATTGCCATCATTTTGTATAAGTACTGTCGTATCTGGTACTAGTTGTCTCTGACAGCAAAATAAAACATGATGATCAATATTTTGGATTGATTTTTTTCTGCTGGGACGATGTGAGCATACACTGATTAGAGCTGATTTTTGCTGCTGATCAGTCTCTATGAGGCAAAATTTCAATAATTGTTTTGTTTTTAGGTGACTTTCTTCTCTGATGTCCAGACTGATTTGCAGATTGCAAAGATCCACTCTTATAATAGAAAGAGATGCCATTAGATTAGAAAAAAAGCCACTTATCACAGGAATTACGTGCTAACACAGTGGTTCACCTTAATGTTCTCTCTTTATAATGCCCCCTTTCAAGATGTGCATAATTGATATTGCCATAAGCACTCTCCTATTCTTTTTGCACAGCTAAAAGAATAGAGTGGATTAGAATACAGAGTAAAGTCTCAGGATTGCACAACAGAATTAATCCTGTTCTATGTCATAAAATATTGCATTCATTAGAAATGAATATTTTCATTGCAAATGAACTGAGACCGGCAGGTAGACGGAGTGATTCCTTTTATTTTGTTTCTCTTAGAAGGAATGATTCCAACAAATGGTAAAAATACAACTAAGGTTTGGCATGTGCCAATCACCTATTTCACAATGTATTTTTTAGAGGAAAACACACACACACACACACACACACACACACACATATATGTATATCACAAAGTAACCCTTTTCTCTTGTGGCAGTATCTCCTTAGGTCCCATTCATTTTTAGAACCCACATGTATTCTTAGCACCCTGTGATACTTGCTACCAGAGTGAACATATTTTCCCAGCCACAACCTGATTGCATGTTCTGGATTATACTCATATTCTCCAGAAATAATTTAAGGATTGAGTTCAATAATCGTGCTCCCGAGGTGGGTGCCATCTGAAATCTAACCCATAATGTTTACCTGCGGTGATGATCAAGAACCTCTCTTGAGAGAATTAGGCCCTTAGGGATATTTTAGAGCAACGTTTAGATTTTTTAAATAACAAAAATCATGATCAAGAACATCTGTTGAAAGAATTAGGCCTTTATGGATATTTTAGAGCAATGTTTAGATTTTTTAAATAACAAAAATGCTAATGAGAATGATGATGGATTCTGCTTGTTGAGTGCTTTTTGTCTTCATAAATTTCCATGAGAAAGGTGTTAATGTGTCCATTTTATGAATTAGTCATCTGACACTCAGAACACCTAAATAACTTGCTGGAGGTCACACAGCTGGGTGAGCGACGGAGCCAGAATTTGACCTCAGCACTGCCTGATTATGAAGCTGTGTGTTCTGTCTGCTTTCAGCTGCTGCCTCTTATTTCCAGTTCCAAGGTCAGTCTAAAACAGTCCTCCCAAACACCCACATATGTTGAATCCTTATGCTGAAGGCAGGTGGTGCCATGGGCTTTTCAGGGTGAGTGGTTTATTTTTCAAGAAGCACAGAGAATTAATTCATTAAGTGGAACTTGAGAGGCTACTCAAATATCTGAGCTGCTGAGAAGTTCAACCTTTTTAATTATCTGGAGTGAGACTTCCCACAATGTTAAACCTTCAGAATGGTGCCAGACTCAGAAGCTCCTCTGCAGTGATTCTGAATTGACAGAATACAGTCAAATAGCCAAGATGAAGTCAAGATCTGAACATTCCAACCAGCGTGTTGCAATGGTTCTGCCACACAGGAAAAAGGAAAGGCGGGCTTTTGTTGCTAGTGAAGGGATAATGACCAATTAAAAAAATAAAACTGAGCAAAGAGAGACAAAGAAGGAAATGAGACAGGGAAAGAGAGAACATAGAGATGAGCATAAAAATTGCAGAGAAAGTGAGTAAATGTAGTGTCAGAAAAGATAAAAAAAGGTGAAATATTTTGTGTAAGGGATGACAACAGGGTGTCAAGTGACAGCTATTCTAAGAGCACAAAAGAAACCTGAGACTAAAGAAAGAAATCATTTTTGTGATTAAGAGAAGGATTAGGAAACAAAAAACAATTTAATTATTACAGATAATATTGCTAAGTATTTTCGTTACACATATGAAGTACTTCTGCGTGTGATATTTCATTTAATCCCCTCACAATATTCCTGCGTAATTGGTTAAGTGGATATTTCAGACTTTATTTCAGAAATATAGAAACTTAGTGCTTGATTTGTCTAGTTTCTAAAATAAGTGGTAGAGTTGAAACAAGAAAATGTGTGTTTTTTTTCACTAGGTGCTGCTAGACATCCTTGTGTGATGTTAAAAGTACATCTGCCATAACATGGCTTTACCACGTATGCTTGGGGGCATTTAATTACTGGGCTAGTCTGGTCTTCTTTTGAAATACCCCTAGGGGATAGCGACATGTAAAAAGTGCAGCACTGAGTGTATTTCAACTATTGCATTTTACTAACCTGAGATTGTCAGGGTGCTTTTATTATAAAATGGAGATCAAGTATGGAAAAAAGGTATTACTTCTGTTACTACCGCTTTGGTGGTTATAGAAGGTGATGAACTGAAACATCAGGACCTGTGGATTTTGCAACAGAGACAAGGCCAAACTGGCTCACCTGCAGAATAAACAAAGGGTAATGTCTATAAAGAGAATTGTGAATAACGGTGCTTATCTGTTGTTCCTGTCTACCCAGGATCTCTTTTCTCATCTTCTTGGTTGTGAATACATTAGGTGGGGTTGACTCATCTCCCCTTCTCTATCCAACATAGATTGGCATATGCTTTGCACTGGGCCAGTGTTCTCCTTGGCTACTTTCTGCCAGAGTACATGGAAAAAACAGGTATTGCTCAGTTGTATAGGGATCTGGGGTTGCCACTTACCATTTTATCCATGCCATGGTGGGAGCCTGATGGAAAACCCAGGACAGGTGGAGCCCTTGGCCCCACTGATTGAGCCTCCAGAAAATAGGATCGCCTGAATCCTTGGACTTGCCATTTGGGGTAACAAATAAATCCTCAAGCTAGTATAAGTTGAGATCTGGTCACTGTAAATCAGTCAAATACAAATGCAGGTAGCTGGTGCATCATAATAATAACCAACACTTATTGAATGTATGCTATACTAGTAAGCATTCTTTAATCACTTCATTCTCGCAGCAATCCTATGACGTGCATGTCCATTACTGTCTCCATTTCACAGGAAGAAACAGAGACAGACTTGTTAGATGACTTGTTAAAGATCAGAGATAGGAAGAAGCAGAGCTGGGATTTGAACTCAGGAAGTCTAGCTGTACTCTGTGAACTCTAGTCATTCTCTATCTCTCTTTGTGTATATCCCCTTGCCATATATGTGTAAATGCCTTTATCTTTCTATATGTGTATCTATATCTGTCTGTATGTTATCTCTCTGAAATATGCAAATTATTGGCAAGAATTGAATTTATGTTACAAATTAGAACATTAATGTTGGTTCTGTGCATGGAAATTAGTATCTCAAATTTCATCCCAGTGTCATGGACAAGAATAGAAATTTCTATTAGAGCTTAAAAAGAAACTATAGATCTATGAGTGTTTTGAAAAGAGCACAATAGGAAAATTAAAATAAGTATAATATTGAAGCATCCATATTATATGACATTAAGTCTCAGTAAGAGACTGAGTTAGCTGATCAAATCTTTTAGCAGTAAAAACAAAACAAAACAGACAAAAAAACAGAGGCAATCACGTATAAGCACTAGGGCATATTTAATATGACTGTTATTGAGGAGAAGACTGCAGTTGGGAAGAATCTTTGAACAGATACTTACTAAAAACTAAAATATTTTGTGAGTCAGAACATTTAGCCAATCCAGCTACTAAGATATTTCAAAGTCGAATGAGTTATCACAAAGCTAGAAGACAAAAAACACTGTACTGGGGAAGCTGTCTAATTTAGTTAATCCAGTTAACTAACTTAGGCAGTTAGTGAGTCTGGTGCCAAGCTACATGTCGAATCGAAAGGGTTAAGTTTTTCACCTTGCATCACTGATATAAGGTGCTCGGAAAAGTAAATTTTATTACTAAGAAGTGTCAAGCTCCTATGTAACTTCCTTTTGCAAGAAAAAAAGCAAGAAAAGTAGGTAAACACTTAAAAAAATCTGCTCTTATGCTTTTGGAAAAAAGAATTTTCTAAGAATCGTGGTTATGATTTAGGACAGAGGTAAGCAAATGGGCCAAATCTGGCCCACCACCTGTTCTTGTAAGGCCTGTATACTTGGAACGATTTTTATGTTTATAAATGGTTGATAAAAGTTACAAGAAGAATAATATTGTTACTTGTGAAAATTATATGAAATTTAAATTTTAATGTCCATACATAAGTTTTATTGGAATATAGCCACACTAATTTCCATATTGCCTATGACTGCTTTTGTGCTATGCCAGCAGAGTTGAGTAATTGTGGTAAAGATTGTATAACCTGCAAAGCCTAAAACATGTACTGGTCCTTTACAGAAGCAATTTGCCAACCCTCTATTTGGATAATAGAGCAATGGTATTGGGAGGTACTTGAAATGTTGTAAGGAAGCAGAGTTAGTGCCTAGAAACAAACAAAGTGACAAATAAGTAAGTATATGTGGGTAGGTTTTAAACATCCTTCCTATTGTCTTGATATTGTTTCCTGAATTAAAACCGTAAACCAAAATTGCATCCAAATATGCAGTGCAGTTTTAGAACCTCTTTTTTTTTTTGAATCTTTATTCTATTTATTACCAATATGATAAGTTATACAACCTTTCTCAGCCTTGGTTTTCTCAATGGAAAAATTACAGAAATAATTCTCTTTTTTGTGACAAGTTTACACAACCTTCTTTGGGAGGTGATGTAGTGGGTTATCAATTTCAGCATAACATAGAACACATGTATTTAATAATAGAATGACTTCATGAACACTGTGTCCTGTTGAAATATGTAGTCTCATAAAGATAAAGCAGGGACATATTTGGGTTTTGGAATGAGGTTTTCTTAAAATACCCATGTAAATTCTGAAAACGTAGCCATTCTTGGACTTCATTCACCTCATCAATGGACTTGGAAAAGGAAGCAGGATTCAAAAAATGAAGGTCAGCTAGCAGGAAGATTATGATCCCCATTCACCATTGTACTGCAATCTAGAAATTGCAGTTCTGGTGTGGACATAGGAGAGGCAAAGAAAAGAGTGCTAAAAAAGGGCCAAGTAATTCCATATTTTGGAGTTGACTGTCAGATTGTTGTGCTTATGCTGTTTGTCTGTTTATAATTACCAACCAGCTTTTTTTCTTATCTCTACGTTTATAAATTCTACCCATGTATTATATTTATTTAAAAACATTTGAAGCATATAACGTATACAAAATGTATATCTCACTGTGCAGGCTGAAGAATGATAATCAATTTTTCCATGTACCCATCTTTAATCTCTCAAACACTGTTTCCTCTGTGTTCTTAGGAAATACTTTTTCTATTTTCTATTCTAATTGCTTGTGTATATGTGTCCTAAATTCTTCTGAAATACTGTGAGTTTCTTCAATGCATGATTCTTGACTCATTCATGTTTGGTTCCCATTACCTTCAACATGTAAGGATGTAAATAAATATGTGTAGAGTGAGTGAGTGAATGCATTGCAAGCTCTCTGTGGTGAGAACTCATTTATTATCTTACTATTCCTTTCAGTTACTATGCTTAGGGGCAATTAACAAATGTTGGAATTGAATGCATTGAAAGGTCCTGTTAGTCTGTCTAGGCACCTCTTGAATGTTTGTGCAAGGCACTGTGCTGTGTTATGTGTTGTTCATTCATGTTCATGAAAGTAATAAAATATAAAACTTACTGAGGAGTTTGAGACTATCCTGTCTGTTCATTGAAGACCTCATATTGTCATATTACTTGCAATTGTAATTGTCGTATTCTTTCTTTCTCTTTCCAGCTATTTCTGGTAGTCATGTCAAGTTGAGTTTATATGCTAGGTTTGATGAAGAGGCAGCATGGAGTGTGATTGGAAAAATGGAGTGTGATCTAATGGAAATAAACTGGGGAGAACTTAGCAGGGCCAGTTGGTTCAGATTCTCCTCTGTATCCTGTTTCTTCAGAGATAGGATTTTGCTTTCTTCTGGGAATATGGAAGCCACTCTAGAATGAGGGTCTTATGACCCACTTCAAGGGAAGGTCAGAAAAATCCTTCCTGGATTTTAGGACCAAATTTGAGGGGAAGGTGAGAATGACCTTCCTGCTTCTGCTATAGTCTCCAATGTCAAGGTGCCATATTTTTGGGCTAACATGTCTTAAACCCCATCAAACTGTATTATCTAATCCTTGGTTTCCTCATCTGC</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT084827&diff=890584NONHSAT0848272014-10-11T01:30:04Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
TUG1: taurine up-regulated gene 1 [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))].<br />
<br />
===Characteristics===<br />
Multiple Tug1 isoforms, with a main 6.7kb transcript in mouse. Spliced [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))].<br />
<br />
===Function===<br />
Required for the proper formation of photoreceptors in the developing rodent retina [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. Downregulation in developing retina leads to decreased retinal transcription factor expression and increased apoptosis [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. TUG1 expression appears to be activated by p53 upon DNA damage, [http://www.ncbi.nlm.nih.gov/pubmed/19182780 (Guttman (2009))] with many p53 binding sites in the Tug1 promoter [http://www.ncbi.nlm.nih.gov/pubmed/19571010 (Khalil (2009))]. Tug1 associates with PRC2 (polycomb repressive complex 2) and represses a number of cell cycle genes [http://www.ncbi.nlm.nih.gov/pubmed/19571010 (Khalil (2009))].<br />
<br />
===Expression===<br />
Expressed in the developing retina and brain [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. Expressed in adult tissues with highest expression in cortex [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. Expression levels are elevated in the caudate nucleus of patients suffering from the trinucleotide repeat neurodegenerative condition, Huntington's disease [http://www.ncbi.nlm.nih.gov/pubmed/22202438 (Johnson (2012))]. Localises to both the nucleus and cytoplasm [http://www.ncbi.nlm.nih.gov/pubmed/19571010 (Khalil (2009))]. Transcript was classified as unstable with a half-life >4 hr in human Hela cells [http://www.ncbi.nlm.nih.gov/pubmed/22369889 (Tani (2012))]. Similar results were found in human B cells and mouse 3T3 cells ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/22406755 Clark (2012)]).<br />
<br />
===Conservation===<br />
Mammals - identified in mouse, rat, cow, dog and human [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. Present in two locations in rat, with one an apparent processed pseudogene.<br />
<br />
===Misc===<br />
Nb: Mouse NRED accession is specific to one of two Tug1 isoforms.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT084827|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 7115 nt|<br />
location = chr22+:31365263..31375327|<br />
number = 3|<br />
exons = 31365263..31367765,31368841..31369587,31371156..31375327|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr22:31365263..31375327&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GCGGCCGCGGGATTTGGAGCGGCCGGGGAGGCGGGGGTGGCCGGGGCCGGCTTGGAGGCCTGGCGCCACCCTTCGGGGCCTGCAAGGACCCAGTTGGGGGGGCAGGAGGGGGCCGGAGGATGGTTGGTTGTGGGATTTCTACTTTGCCTTTTCCTCCTTATGCCGCCTTAGTGAGGGGCGGGAGCTCTGGCGGCAGCCCCGGGGTGGGGAGACGAGCTCCGGAGTCGGAAGAGCTGGGTTTTCTTCCGGGCCTAGCCACCAGTTGGCGGAGTGACCTTAGGCGAGTCACTCTGTAATTTGTCTGCGCCTCAGTTTCCTCCTCTGCCTATCAATGTGTGTGGGGTTGAAATCGCTTTGTAAACTATAAAGCGTGGGTGTACGTAAAGGATGGTTATTGTTTATAATTTTTTTTGAGTTGTAAGAAAACTTAGCAGTTCCCCAATCCTTGGGTTTTGAACCTGGGAACCTTGGATTGGAGTTGGGGATCCCCAAACTTCCTGAAATTGTGGGAATGTGCGGTTTGGGGGAATGATGGGAATTTGTGGGAATGTGCGTTTTAGGGGAATGATGATCCATCGCTAGCAAGTTTTCCAAGGGGGCTGTGACCCAGAAGAGTTAAGAATCACAATTTCTTCATGCTACAGAGAGGAAACTGAGGCCTAGATGTCATTTGGGACCCTTCACAACCATTTTGAAGCCCTGTTTGAGTCCCTGGGATATGTGAGCTGTTTCTATGCATAATGGATATTCGGGGTTAACAACAGTCCCCTGCTTGGCTTCTATTCTGAATCCTTTTCTTTCACCATGGGGTGCCTGAAGGGTGGCTGATGCATATGGTACAATGGCACCCAGTGTAAAGCAGCTACAATTAGGAGTGGATGTGTTCTGTAGCATCCTATTTAAATAAGCCTATTTTATCCTTTGGCCCGTCAACTCTGTTATCTGCTGCTTGTACTGGTGCCTGTACTTTTCTGACTCTCATTGACCATATTCCACGACCATGGTTGTCATCCATTACTTGATCCTACTTTACATGTCTAGTCTGTGTGGTTGGTGGTGAATAGGCTTCTTTTTACATGGTGCTGCCAGCCCAGCTAATTAATGGTGCACGTGGACTTTTAGCAAGCGGGCTCACTGGAAGAGACTGAACCTGGCATGGAATTCCTGAAGATGTTTGGGGTTTTTTTCTTTCTTAATCGAAAGTTAACATTGTCTGAAAAGTTTTGTTAGAACTACTGCGGAACCTCAAAATCAGTAGATTTGGAAGTGATTCAAAGCTAAACTTTTTCCTTGGCCCTCCTTGTGTTCTAATTGCTTGCAAGTGTAATACTAGGATGTCCAAGATGCCAGTTTTTGCTTCTTTGTTAGTTGTCAGCTGCTTTTATCAAATTTCAGGCCATTATCCAACAAACACTATAAAAATGTTTGAACAATTGGATTTCAAACATTTTCGTTTTGTGGAGTGGTGCTCACCAAGTGGTACAGCCCTAAGCAAGTGAACACAAACACATTTAAGTGTATTTTGTCTGATTAGATGTTAGCCAGTTATGCTATTTCATTCAAATGTCTGAAAAAATCAATTGACTATTCCCTTTTCCTAAAGGGCAGAGACAGATAATCTCACTTCCAGAGAAATGACTTGGAGAAAAAAAAGTGTTGGTCTTTTTGCTCTTTTGTAATTAAATCCGGATGTACCTCAAAAGACTTAAGACTGTGGTGATAAGATGCTTTCCTCAGCAGAAAGGAGGGAAAAAAAACAACTGGAACTCAAAGCTTGAAATTCTGTGGCAAAACATGAGATGTCCAGGATTGGAGGTTGAAAAGATTTCACTACAGTGTTCTGCAATAGTTGGAGCAGATAACTTTCAGTGTAGCCACAGCCATGGACTCCAGATTTCCAGATTTTCAAGACCTGGACCTGGAACCCGAAAGAGCTTGTCACGATGCGGCAGGAACACTGGAGGTAGATTTTTTTTTATTTTTGAATTTTGGGACTGTTGACCTTGCTGTGAGAAAAGAGACAACGACTGAGCAAGCACTACCACCAGCACTGTTACTGGGAATTAGAAGACCTGAGTTTCTGTCCAGACCCTCAGTGCAAACTGAGGATGCTCCATCCAAAGTGAATTATGTCCTGTGCCTCCTGATTGCTGAGTGTTCACCTGGACCTTCTGACTACCTTCCCTGTGCTATTCCATCAGCCTACAGACCTGGTACCTGGATTTTTGCCCGAGATGATTCCTACCACCTTACTACTGACGAAGACACCCATTCCAGTGGACCACTGTGACCCAGGAGGCATTCAGCCATCATGATGTGGCCTTTACCTCCACTCCTGTCTTGTTCTACCCAGATTCAGCACAGCCCTTTATAGTGAAGTCAGAGTCCTCAAGCCAAATAGCTAAAGCTGTTTTATCACAACAAAGGCCTAGTTTGTTCCATGAGTGTGCATTTCATTTCTTCAGTTAAAGCCTTCAGAGACACACAATAAATTTGGACCAGGGGATTTTTTAGTTATTAATGCTCTCTGAAGAAAGGCAACATCTTTTTGAGAGCAGCATTGGACCACACCCCACAATCTCAAATGATTGAAATTCATGAACATCTAGGATCCCGTGAAGGTCACTGGACCCTGTTTTTTCTACTTCAAATCCTGTAGTAGCCTACTGAATGAGAAAACATATTCTGACCCATTGGGATCAAATCAAAGGCACAGTGAACTCCTCATAGCATCTTCTTTGGAATTACTCAGGAACCAGAACTTTTTACACAAATGTAAGAAATTCTACCAAGGAGTCCCCTTACCTAACAGCATCTCACAAGGCTGCACCAGATTCCAGAAAAGGCTTCTCTTGATACATCAAGGTAGAACCTCTATGCATTTTGTGACCGACTTATTCTTAGATCATTGGTTTTCCAAAGGCTTTGTGGCCATGAAGCCCTTTGAGTGAAAACTGTGCAGAAGCCCAGAGTAAAAGTGAAGCTGCTCTGGATGAAGTAGTGAAGCAAGAGTAGGGGCCTGAATCCTGCTACAACTATCTTCCTTTACCACCGTGGTGACACCTAAGGGGACTTCCTTACAACACCTTGAACTCTTCCGAACACAGTTTGAAAACCACTGCCCCAGACAGCAATATGTTTGACCTGAATGGCATTCCAATCTTTTCTGTACCTCCACTCAGCACAGTTCATGTTCAGTAGATGCTGAACATTCTTAGAAATACTGTGTGTGAACTTAGAAAAGTGCAAGAAGACAGGCATGTCTTTGACCCCAGGAATGATCATTTGCTGAAGATGGTGTCAAGTGAACCTAGATTAACAGCCCTCCACTCCAGATGGATATCCAGTGATTCCTAGAATGGGATATAGCCAGAGAACAATTCTATGCACCCTACACTGACAGACTCCCTTAAGCAACACCAGATGCTCTACTGGTACTTGAAGTACATGACTTTGAAGTCTTGACCCTCCATGAATACCTGAATTATCAGCAAGCGGGTTTTGAAGCTGGTGCCTCATTGAGGCCATATTAGAGCAACTTGTACATTTGACCTCTTGTTATCAGCCATGGTACTCTACTTCGTGTGCAAGAGATAACTATGAAAGCCAAATTCAAATACTGGCAACATTTCCTAAAGGGGCTCAATATCTATCATTCGTCTTCTTTTCCAAACTACACATCACTGTATGACTCAACCAGTAGCAGTTATATTGCCCCTTGGTTTTTATTCAGTTTAACTACTGTTTCCAAGATAAATGAGCTAATAAGCTTTAAAAAAAAAAAAAAAAAAGGCTGAATTCTTTTTTCTTCATCACTGGCATATCTGCCTATTCTCCAGAATTATTATGACTATTCAGCTCACTTTAACAGTTGAACTTCAAGCGACAATCTTTGAACACCCCTTCTCATGTGATTTAAAATGAAACCATTTGGAAAAGTTTCTTCTAGCCAGTAATAGATTTTTTTTTTAATTGCTCTGCCTTGTGCCGAGAGATGTTCTTTTAAGATGAATCTTTTGATGTCTGATACCACCAAATATAGGTGGTAGGGAGAGTTGGAGGCTGGCCCTTTGAGCAGGCCATTAGCTTACTTGCTGGGCATTTCCGATAGCTTATTGCCTACCTTTTTGCTGGAAACAAACTGATTTGAAAAACAAAATCTATGAAGACTGCAGCTAAGGATTTTATCGGTAGACTTAAGAGCTTTTGTCCTTGTGGATATTTTAGTGGAACCACATCAGTCTCAATACTGTCATTTTACACTGACTCAGAGCAGCTGACTTCATTCCTTGCCATGATATATATTTAAGGCAGGCATTGTAACAGACATAAAGACAACTTATCTGTTTCAGCAGGAAGGATTCAGTTTATGAACTCTCAGACCAGATCATGTTGAACAAGGAGACTTTGATGTGTGTCATGAGAAAACTCATTCTTTACTTCCCAGTCAATTTAAAGGCCAGCTATCCTGAGCTACTCGAATGAATGCACTGGTTAAACATTGGAAATAGTTTGTTTATATCCTTGTCTCTCTCTAGGCCAATTGTGATTACATGACTCGACTCTACATCTCGTCAAACAAGGCCTAGGTCTGGTTGCTGTAGACTGCTCGCCCTCAACAAATAAAATCTGGTTGACTAGCCTCCTTGTATATACAACTATTATTTGTTAAGAAGAAATTATCGTCAATTTTCTACTACCTTCCAATTGTCAGCTCTTTTTTTCCTCTCTGGTTTTTCCTATACTTTACAGAAAAAGACATTGATCTATACTGCCATTCCCTCTAATCCTGCCATACTCAGTCAAAAGGAATGACTTAAGATGAAGATGATCATCTGCTCGAGTCTAAAATATACATTGTATATAAGAATTGGTGATTAGAAAAGCAAAAAACCTAAAACTTAAATCTAGGAGTCTGTATACTGTCTCCATGTCTCCATGCCTCAGATCTCATCTAAATCTTTGAACAGCACCATTCAACCAATCTGAGGCCTTGACTTGCTTGTAAGATGATTCTCAGAGATCGGCTGAGTTAAAAAAGATGACGACTTGATTACCAAAGAAAGTAGGGCCAACTTTGACAAATCTGGCTCTGCTGACCCTGTCACTCCCAGATGTAGCATAGACTCCTAAACAGAACCTCAAGTCTGATTGAGGATAAGGCCTTCTCCTGAGCTGAAAGTTCTTTGGCAGATGAGCAAGAAACTGAAAGCTGATGTACCTGACTGGCTCTGTAAGATCAGAAAACTGTATCCAGAATAAGCCCTATGGATTAACCCCTGAGTACCCAGAGTAAAAACTAATTTACAGAACTTCCTTATTGATCTGCTGGTTCTTCCAGATCATATTCTGGCTATTGGTATGGCTGGCCTTTCTGAAGGTACCCTGCTTGTCTATTTTCCTGACTCAGCTCTTGCCTGCCTTTTTCACATGTTGCTGCAATTAGACTCACCGTGAGGACTACAGTCAATTTCAGTCTATCTTGTGCCCAATACAACAAGGATTTTTAATAGTAACAACCCACACCTCACCCACTAGGACTCAATGTTCACAACAGGAAGGACCATTGCTGCATACTCCTTGACCAGCAACTTTTTTGAAGATATTTTTAAGTGCAGAGTAGGCCTCTATTCCTGTATGTAATTGTTCATTTTCAGCACCTGGAACCTCATCTATCGGGTCTGGAAGGAATACAGCAGTTCGAAAGCCGCGTCCATTTCTCTCCTTCAGTAGTGCAGAAATGAGTCCGATTCACCAGTACACACAGAACTGTACCAGTTCAACCTAGCAAAAGAAGAAAAGTTTCCACTGTACTTAAAATTTACAGCTGACTCAAATTGCCTCACAGAATTATTTGATGTAGAAGGCTAGTTGTCTTACTTCAGATCAGCAGGACAGTTGGGCTCTCAGACTCATGACCACTGAGTTTGCTTGTGTTGAAACTGTGGTTTCATCCAACATATGCTATTGGACATGATTATTATTCCATTCAAATGGATTACAGACTTCTTGAGGACAGGACAAACTTATCTCTCATGGTGTTTTTTTAGAATACTTTTATAACCAAGGAAGAAACCATGCCAGCTGTTACCATTCAACTTCTTAAGCAGAGATTAAGCTTTTTCATATCTGTTCTTATCCTGGACATCAGTAGTTTTTAATTGCCCAGCATCCGTTCCATCTTGTAACAACTCCCTGATGTTTCTTAAAACCACCTCTTCCTATTTTCAGTCTGTGGTTTGGACAGTCTGACCCAACCTTGAGCTTTGTGGGTGAACATGTAATTCAGACCTCATCAATCAGCAAATCCATCTGAACTGTGGAGGAGAAGCTCTCTTTACTGAGGGTGCTTTAGCTTTGTAGGATGAAAACCTCAAACTAACAGGGCCTACCATGTAGAGAATGAAGCCAGTGCAGGGGAAAGCAGAGCCAAAATATGGAGAGACTTGAATCCTGATGACAGCGTTTGTGCCCCTGGATCCAACCGTGCCTGAAGCTAGAATATCCCCTGGACTTTTCAGTTATGTGAACCAATAAATACCCTTTTTTGCTTAAGTTACTTTGAGTTGGGTTTCTGTTACTTGAAATTGAATCCACACTAATATATCTACCAACATTGAGACTTGACAGATCCAAGTATTTATTAAGCTAGAGGTCATGGTCACTGAAATTACTTTCCAAAGTGGAAGACAAAATGAAACAGGAACTGAGGGAATATTTAAGATCCCACAGAAGCGTAAAAATGACATGGTAGAAAGTAATAGAAAACCTAAATGTCTGTCATTAAAGGATAGGTTAAGGTGTGGTTCAGCCATATAGGAATATCTCGTATCTGTTAAAATGAATAAAGTACATTCATTGTGTATGGAAAAATGGCCATGATACATTAGGTGAAACAAGTTATTAATAGAAAAGTGTACAGTGTGAACTCATTTTAAAATGTGTGTGCTTATGTTTATAAATGCATAGAAAGGTCTATTCACAGCTTTCTTTGAACAGTGTAGATCACATGAAACTTTCAACTTTATACATTTCTGTATTAATATTTTACACTACCCACATTATTTTTAAACTTTATTTTAAATAAAGAATTTTTAAAATTAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT084827&diff=890583NONHSAT0848272014-10-11T01:29:44Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
TUG1: taurine up-regulated gene 1 [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))].<br />
<br />
===Characteristics===<br />
Multiple Tug1 isoforms, with a main 6.7kb transcript in mouse. Spliced [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))].<br />
<br />
===Function===<br />
Required for the proper formation of photoreceptors in the developing rodent retina [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. Downregulation in developing retina leads to decreased retinal transcription factor expression and increased apoptosis [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. TUG1 expression appears to be activated by p53 upon DNA damage, [http://www.ncbi.nlm.nih.gov/pubmed/19182780 (Guttman (2009))] with many p53 binding sites in the Tug1 promoter [http://www.ncbi.nlm.nih.gov/pubmed/19571010 (Khalil (2009))]. Tug1 associates with PRC2 (polycomb repressive complex 2) and represses a number of cell cycle genes [http://www.ncbi.nlm.nih.gov/pubmed/19571010 (Khalil (2009))].<br />
<br />
===Expression===<br />
Expressed in the developing retina and brain [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. Expressed in adult tissues with highest expression in cortex [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. Expression levels are elevated in the caudate nucleus of patients suffering from the trinucleotide repeat neurodegenerative condition, Huntington's disease [http://www.ncbi.nlm.nih.gov/pubmed/22202438 (Johnson (2012))]. Localises to both the nucleus and cytoplasm [http://www.ncbi.nlm.nih.gov/pubmed/19571010 (Khalil (2009))]. Transcript was classified as unstable with a half-life >4 hr in human Hela cells [http://www.ncbi.nlm.nih.gov/pubmed/22369889 (Tani (2012))]. Similar results were found in human B cells and mouse 3T3 cells ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/22406755 Clark (2012)]).<br />
<br />
===Conservation===<br />
Mammals - identified in mouse, rat, cow, dog and human [http://www.ncbi.nlm.nih.gov/pubmed/15797018 (Young (2005))]. Present in two locations in rat, with one an apparent processed pseudogene.<br />
<br />
===Misc===<br />
Nb: Mouse NRED accession is specific to one of two Tug1 isoforms.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT084827|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 7115 nt|<br />
location = chr22+:31365263..31375327|<br />
number = 3|<br />
exons = 31365263..31367765,31368841..31369587,31371156..31375327|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr22:31365263..31375327&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GCGGCCGCGGGATTTGGAGCGGCCGGGGAGGCGGGGGTGGCCGGGGCCGGCTTGGAGGCCTGGCGCCACCCTTCGGGGCCTGCAAGGACCCAGTTGGGGGGGCAGGAGGGGGCCGGAGGATGGTTGGTTGTGGGATTTCTACTTTGCCTTTTCCTCCTTATGCCGCCTTAGTGAGGGGCGGGAGCTCTGGCGGCAGCCCCGGGGTGGGGAGACGAGCTCCGGAGTCGGAAGAGCTGGGTTTTCTTCCGGGCCTAGCCACCAGTTGGCGGAGTGACCTTAGGCGAGTCACTCTGTAATTTGTCTGCGCCTCAGTTTCCTCCTCTGCCTATCAATGTGTGTGGGGTTGAAATCGCTTTGTAAACTATAAAGCGTGGGTGTACGTAAAGGATGGTTATTGTTTATAATTTTTTTTGAGTTGTAAGAAAACTTAGCAGTTCCCCAATCCTTGGGTTTTGAACCTGGGAACCTTGGATTGGAGTTGGGGATCCCCAAACTTCCTGAAATTGTGGGAATGTGCGGTTTGGGGGAATGATGGGAATTTGTGGGAATGTGCGTTTTAGGGGAATGATGATCCATCGCTAGCAAGTTTTCCAAGGGGGCTGTGACCCAGAAGAGTTAAGAATCACAATTTCTTCATGCTACAGAGAGGAAACTGAGGCCTAGATGTCATTTGGGACCCTTCACAACCATTTTGAAGCCCTGTTTGAGTCCCTGGGATATGTGAGCTGTTTCTATGCATAATGGATATTCGGGGTTAACAACAGTCCCCTGCTTGGCTTCTATTCTGAATCCTTTTCTTTCACCATGGGGTGCCTGAAGGGTGGCTGATGCATATGGTACAATGGCACCCAGTGTAAAGCAGCTACAATTAGGAGTGGATGTGTTCTGTAGCATCCTATTTAAATAAGCCTATTTTATCCTTTGGCCCGTCAACTCTGTTATCTGCTGCTTGTACTGGTGCCTGTACTTTTCTGACTCTCATTGACCATATTCCACGACCATGGTTGTCATCCATTACTTGATCCTACTTTACATGTCTAGTCTGTGTGGTTGGTGGTGAATAGGCTTCTTTTTACATGGTGCTGCCAGCCCAGCTAATTAATGGTGCACGTGGACTTTTAGCAAGCGGGCTCACTGGAAGAGACTGAACCTGGCATGGAATTCCTGAAGATGTTTGGGGTTTTTTTCTTTCTTAATCGAAAGTTAACATTGTCTGAAAAGTTTTGTTAGAACTACTGCGGAACCTCAAAATCAGTAGATTTGGAAGTGATTCAAAGCTAAACTTTTTCCTTGGCCCTCCTTGTGTTCTAATTGCTTGCAAGTGTAATACTAGGATGTCCAAGATGCCAGTTTTTGCTTCTTTGTTAGTTGTCAGCTGCTTTTATCAAATTTCAGGCCATTATCCAACAAACACTATAAAAATGTTTGAACAATTGGATTTCAAACATTTTCGTTTTGTGGAGTGGTGCTCACCAAGTGGTACAGCCCTAAGCAAGTGAACACAAACACATTTAAGTGTATTTTGTCTGATTAGATGTTAGCCAGTTATGCTATTTCATTCAAATGTCTGAAAAAATCAATTGACTATTCCCTTTTCCTAAAGGGCAGAGACAGATAATCTCACTTCCAGAGAAATGACTTGGAGAAAAAAAAGTGTTGGTCTTTTTGCTCTTTTGTAATTAAATCCGGATGTACCTCAAAAGACTTAAGACTGTGGTGATAAGATGCTTTCCTCAGCAGAAAGGAGGGAAAAAAAACAACTGGAACTCAAAGCTTGAAATTCTGTGGCAAAACATGAGATGTCCAGGATTGGAGGTTGAAAAGATTTCACTACAGTGTTCTGCAATAGTTGGAGCAGATAACTTTCAGTGTAGCCACAGCCATGGACTCCAGATTTCCAGATTTTCAAGACCTGGACCTGGAACCCGAAAGAGCTTGTCACGATGCGGCAGGAACACTGGAGGTAGATTTTTTTTTATTTTTGAATTTTGGGACTGTTGACCTTGCTGTGAGAAAAGAGACAACGACTGAGCAAGCACTACCACCAGCACTGTTACTGGGAATTAGAAGACCTGAGTTTCTGTCCAGACCCTCAGTGCAAACTGAGGATGCTCCATCCAAAGTGAATTATGTCCTGTGCCTCCTGATTGCTGAGTGTTCACCTGGACCTTCTGACTACCTTCCCTGTGCTATTCCATCAGCCTACAGACCTGGTACCTGGATTTTTGCCCGAGATGATTCCTACCACCTTACTACTGACGAAGACACCCATTCCAGTGGACCACTGTGACCCAGGAGGCATTCAGCCATCATGATGTGGCCTTTACCTCCACTCCTGTCTTGTTCTACCCAGATTCAGCACAGCCCTTTATAGTGAAGTCAGAGTCCTCAAGCCAAATAGCTAAAGCTGTTTTATCACAACAAAGGCCTAGTTTGTTCCATGAGTGTGCATTTCATTTCTTCAGTTAAAGCCTTCAGAGACACACAATAAATTTGGACCAGGGGATTTTTTAGTTATTAATGCTCTCTGAAGAAAGGCAACATCTTTTTGAGAGCAGCATTGGACCACACCCCACAATCTCAAATGATTGAAATTCATGAACATCTAGGATCCCGTGAAGGTCACTGGACCCTGTTTTTTCTACTTCAAATCCTGTAGTAGCCTACTGAATGAGAAAACATATTCTGACCCATTGGGATCAAATCAAAGGCACAGTGAACTCCTCATAGCATCTTCTTTGGAATTACTCAGGAACCAGAACTTTTTACACAAATGTAAGAAATTCTACCAAGGAGTCCCCTTACCTAACAGCATCTCACAAGGCTGCACCAGATTCCAGAAAAGGCTTCTCTTGATACATCAAGGTAGAACCTCTATGCATTTTGTGACCGACTTATTCTTAGATCATTGGTTTTCCAAAGGCTTTGTGGCCATGAAGCCCTTTGAGTGAAAACTGTGCAGAAGCCCAGAGTAAAAGTGAAGCTGCTCTGGATGAAGTAGTGAAGCAAGAGTAGGGGCCTGAATCCTGCTACAACTATCTTCCTTTACCACCGTGGTGACACCTAAGGGGACTTCCTTACAACACCTTGAACTCTTCCGAACACAGTTTGAAAACCACTGCCCCAGACAGCAATATGTTTGACCTGAATGGCATTCCAATCTTTTCTGTACCTCCACTCAGCACAGTTCATGTTCAGTAGATGCTGAACATTCTTAGAAATACTGTGTGTGAACTTAGAAAAGTGCAAGAAGACAGGCATGTCTTTGACCCCAGGAATGATCATTTGCTGAAGATGGTGTCAAGTGAACCTAGATTAACAGCCCTCCACTCCAGATGGATATCCAGTGATTCCTAGAATGGGATATAGCCAGAGAACAATTCTATGCACCCTACACTGACAGACTCCCTTAAGCAACACCAGATGCTCTACTGGTACTTGAAGTACATGACTTTGAAGTCTTGACCCTCCATGAATACCTGAATTATCAGCAAGCGGGTTTTGAAGCTGGTGCCTCATTGAGGCCATATTAGAGCAACTTGTACATTTGACCTCTTGTTATCAGCCATGGTACTCTACTTCGTGTGCAAGAGATAACTATGAAAGCCAAATTCAAATACTGGCAACATTTCCTAAAGGGGCTCAATATCTATCATTCGTCTTCTTTTCCAAACTACACATCACTGTATGACTCAACCAGTAGCAGTTATATTGCCCCTTGGTTTTTATTCAGTTTAACTACTGTTTCCAAGATAAATGAGCTAATAAGCTTTAAAAAAAAAAAAAAAAAAGGCTGAATTCTTTTTTCTTCATCACTGGCATATCTGCCTATTCTCCAGAATTATTATGACTATTCAGCTCACTTTAACAGTTGAACTTCAAGCGACAATCTTTGAACACCCCTTCTCATGTGATTTAAAATGAAACCATTTGGAAAAGTTTCTTCTAGCCAGTAATAGATTTTTTTTTTAATTGCTCTGCCTTGTGCCGAGAGATGTTCTTTTAAGATGAATCTTTTGATGTCTGATACCACCAAATATAGGTGGTAGGGAGAGTTGGAGGCTGGCCCTTTGAGCAGGCCATTAGCTTACTTGCTGGGCATTTCCGATAGCTTATTGCCTACCTTTTTGCTGGAAACAAACTGATTTGAAAAACAAAATCTATGAAGACTGCAGCTAAGGATTTTATCGGTAGACTTAAGAGCTTTTGTCCTTGTGGATATTTTAGTGGAACCACATCAGTCTCAATACTGTCATTTTACACTGACTCAGAGCAGCTGACTTCATTCCTTGCCATGATATATATTTAAGGCAGGCATTGTAACAGACATAAAGACAACTTATCTGTTTCAGCAGGAAGGATTCAGTTTATGAACTCTCAGACCAGATCATGTTGAACAAGGAGACTTTGATGTGTGTCATGAGAAAACTCATTCTTTACTTCCCAGTCAATTTAAAGGCCAGCTATCCTGAGCTACTCGAATGAATGCACTGGTTAAACATTGGAAATAGTTTGTTTATATCCTTGTCTCTCTCTAGGCCAATTGTGATTACATGACTCGACTCTACATCTCGTCAAACAAGGCCTAGGTCTGGTTGCTGTAGACTGCTCGCCCTCAACAAATAAAATCTGGTTGACTAGCCTCCTTGTATATACAACTATTATTTGTTAAGAAGAAATTATCGTCAATTTTCTACTACCTTCCAATTGTCAGCTCTTTTTTTCCTCTCTGGTTTTTCCTATACTTTACAGAAAAAGACATTGATCTATACTGCCATTCCCTCTAATCCTGCCATACTCAGTCAAAAGGAATGACTTAAGATGAAGATGATCATCTGCTCGAGTCTAAAATATACATTGTATATAAGAATTGGTGATTAGAAAAGCAAAAAACCTAAAACTTAAATCTAGGAGTCTGTATACTGTCTCCATGTCTCCATGCCTCAGATCTCATCTAAATCTTTGAACAGCACCATTCAACCAATCTGAGGCCTTGACTTGCTTGTAAGATGATTCTCAGAGATCGGCTGAGTTAAAAAAGATGACGACTTGATTACCAAAGAAAGTAGGGCCAACTTTGACAAATCTGGCTCTGCTGACCCTGTCACTCCCAGATGTAGCATAGACTCCTAAACAGAACCTCAAGTCTGATTGAGGATAAGGCCTTCTCCTGAGCTGAAAGTTCTTTGGCAGATGAGCAAGAAACTGAAAGCTGATGTACCTGACTGGCTCTGTAAGATCAGAAAACTGTATCCAGAATAAGCCCTATGGATTAACCCCTGAGTACCCAGAGTAAAAACTAATTTACAGAACTTCCTTATTGATCTGCTGGTTCTTCCAGATCATATTCTGGCTATTGGTATGGCTGGCCTTTCTGAAGGTACCCTGCTTGTCTATTTTCCTGACTCAGCTCTTGCCTGCCTTTTTCACATGTTGCTGCAATTAGACTCACCGTGAGGACTACAGTCAATTTCAGTCTATCTTGTGCCCAATACAACAAGGATTTTTAATAGTAACAACCCACACCTCACCCACTAGGACTCAATGTTCACAACAGGAAGGACCATTGCTGCATACTCCTTGACCAGCAACTTTTTTGAAGATATTTTTAAGTGCAGAGTAGGCCTCTATTCCTGTATGTAATTGTTCATTTTCAGCACCTGGAACCTCATCTATCGGGTCTGGAAGGAATACAGCAGTTCGAAAGCCGCGTCCATTTCTCTCCTTCAGTAGTGCAGAAATGAGTCCGATTCACCAGTACACACAGAACTGTACCAGTTCAACCTAGCAAAAGAAGAAAAGTTTCCACTGTACTTAAAATTTACAGCTGACTCAAATTGCCTCACAGAATTATTTGATGTAGAAGGCTAGTTGTCTTACTTCAGATCAGCAGGACAGTTGGGCTCTCAGACTCATGACCACTGAGTTTGCTTGTGTTGAAACTGTGGTTTCATCCAACATATGCTATTGGACATGATTATTATTCCATTCAAATGGATTACAGACTTCTTGAGGACAGGACAAACTTATCTCTCATGGTGTTTTTTTAGAATACTTTTATAACCAAGGAAGAAACCATGCCAGCTGTTACCATTCAACTTCTTAAGCAGAGATTAAGCTTTTTCATATCTGTTCTTATCCTGGACATCAGTAGTTTTTAATTGCCCAGCATCCGTTCCATCTTGTAACAACTCCCTGATGTTTCTTAAAACCACCTCTTCCTATTTTCAGTCTGTGGTTTGGACAGTCTGACCCAACCTTGAGCTTTGTGGGTGAACATGTAATTCAGACCTCATCAATCAGCAAATCCATCTGAACTGTGGAGGAGAAGCTCTCTTTACTGAGGGTGCTTTAGCTTTGTAGGATGAAAACCTCAAACTAACAGGGCCTACCATGTAGAGAATGAAGCCAGTGCAGGGGAAAGCAGAGCCAAAATATGGAGAGACTTGAATCCTGATGACAGCGTTTGTGCCCCTGGATCCAACCGTGCCTGAAGCTAGAATATCCCCTGGACTTTTCAGTTATGTGAACCAATAAATACCCTTTTTTGCTTAAGTTACTTTGAGTTGGGTTTCTGTTACTTGAAATTGAATCCACACTAATATATCTACCAACATTGAGACTTGACAGATCCAAGTATTTATTAAGCTAGAGGTCATGGTCACTGAAATTACTTTCCAAAGTGGAAGACAAAATGAAACAGGAACTGAGGGAATATTTAAGATCCCACAGAAGCGTAAAAATGACATGGTAGAAAGTAATAGAAAACCTAAATGTCTGTCATTAAAGGATAGGTTAAGGTGTGGTTCAGCCATATAGGAATATCTCGTATCTGTTAAAATGAATAAAGTACATTCATTGTGTATGGAAAAATGGCCATGATACATTAGGTGAAACAAGTTATTAATAGAAAAGTGTACAGTGTGAACTCATTTTAAAATGTGTGTGCTTATGTTTATAAATGCATAGAAAGGTCTATTCACAGCTTTCTTTGAACAGTGTAGATCACATGAAACTTTCAACTTTATACATTTCTGTATTAATATTTTACACTACCCACATTATTTTTAAACTTTATTTTAAATAAAGAATTTTTAAAATTAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]}</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT022116&diff=890582NONHSAT0221162014-10-11T01:28:09Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
TncRNA: trophoblast noncoding RNA.<br /> TSU: trophoblast STAT utron (untranslated region of an mRNA).<br />
<br />
===Characteristics===<br />
~480 nuc [http://www.ncbi.nlm.nih.gov/pubmed/9858482 (Peyman (1999))], independent transcript from the 3' end of the Neat1 short isoform/MEN epsilon.<br /> Contains a number of sequence motifs that match binding sites for proteins involved in cytokine signalling which up-regulate MHC genes [http://www.ncbi.nlm.nih.gov/pubmed/9858482 (Peyman (1999))]. <br />
<br />
===Function===<br />
Suppressed induction of MHC class II antigens by interferon gamma and partially blocked constitutive and interferon gamma induced expression of MHC class I antigens and ICAM-I ([http://www.ncbi.nlm.nih.gov/pubmed/9858482 Peyman (1999)], [http://www.ncbi.nlm.nih.gov/pubmed/12565840 Geirsson (2003)])<br />Suppressed major histocompatibility (MHC) class II expression in-vitro through inhibition of class II transactivator (CIITA) promoters ([http://www.ncbi.nlm.nih.gov/pubmed/12565840 Geirsson (2003)], [http://www.ncbi.nlm.nih.gov/pubmed/12883198 Geirsson (2003)], [http://www.ncbi.nlm.nih.gov/pubmed/15454174 Geirsson (2004)]). Also bound STAT1 and reduced its nuclear translocation [http://www.ncbi.nlm.nih.gov/pubmed/9858482 (Peyman (1999))], contributing to suppression of MHCII and I in human trophoblast cells and hence preventing a deleterious maternal immune response to placental invasion of the uterine wall.<br /> Note: While STAT1 binds the CIITA promoter, it's binding did not appear to be affected by TncRNA, which acted on an area with no known transcription factor binding sites [http://www.ncbi.nlm.nih.gov/pubmed/12883198 (Geirsson (2003))], so the mechanism is unclear.<br />
<br />
===Expression===<br />
Expressed exclusively in the placenta and pancreas while full length Neat1 is expressed ubiquitously. Placenta was the only tissue where TncRNA predominated [http://www.ncbi.nlm.nih.gov/pubmed/9858482 (Peyman (1999))]. <br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
This transcript comes from the very 3' end of the Neat1 short isoform. It is therefore part of Neat1 but as described above appears to be expressed independently with a function different to that of the full length transcript.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT022116|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 481 nt|<br />
location = chr11+:65193526..65194002|<br />
number = 1|<br />
exons = 65193526..65194002|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr11:65193526..65194002&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>AAGCGGCGAGGTGCCTTTACTACATGTGTGATCTGAAAACCCTGCTTGGTTCTGAGCTGCGTCTATTGAATTGGTAAAGTAATACCAATGGCTTTTTATCATTTCCTTCTTCCCTTTAAGTTTCACTTGAAATTTTAAAAATCATGGTTATTTTTATCGTTGGGATCTTTCTGTCTTCTGGGTTCCATTTTTTAAATGTTTAAAAATATGTTGACATGGTAGTTCAGTTCTTAACCAATGACTTGGGGATGATGCAAACAATTACTGTCGTTGGGATTTAGAGTGTATTAGTCACGCATGTATGGGGAAGTAGTCTCGGGTATGCTGTTGTGAAATTGAAACTGTAAAAGTAGATGGTTGAAAGTACTGGTATGTTGCTCTGTATGGTAAGAACTAATTCTGTTACGTCATGTACATAATTACTAATCACTTTTCTTCCCCTTTACAGCACAAATAAAGTTTGAGTTCTAAACTCATTAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=ENST00000538665.1&diff=890581ENST00000538665.12014-10-11T01:26:54Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
Tmevpg1: Theiler's murine encephalomyelitis virus persistence candidate gene 1<br />
<br />
===Characteristics===<br />
Found within the Tmevpg3 genetic locus which controls Theiler's virus persistance/ load [http://www.ncbi.nlm.nih.gov/pubmed/11735227 (Vigneau (2001))]. Promoter contains binding sites for E2A and the Ets family of transcription factors. Suggesting regulation by transcription factors involved in the immune system [http://www.ncbi.nlm.nih.gov/pubmed/11735227 (Vigneau (2001))]. Spliced with 5 or 6 exons depending on isoform/ species [http://www.ncbi.nlm.nih.gov/pubmed/11735227 (Vigneau (2001))].<br />
<br />
===Function===<br />
It has been speculated there may be a regulatory regulationship between Tmevpg1 and Ifng to explain their reciprocal expression [http://www.ncbi.nlm.nih.gov/pubmed/12719555 (Vigneau (2003))].<br />
<br />
===Expression===<br />
In resistant mice Tmevpg1 is constitutively expressed in CD4+ and CD8+immune cells in the spleen and thymus and upon infection, by immune cells infiltrating into the CNS, however no Tmevpg1 expression was seen in susceptible mice ([http://www.ncbi.nlm.nih.gov/pubmed/11735227 Vigneau (2001)], [http://www.ncbi.nlm.nih.gov/pubmed/12719555 Vigneau (2003)]). Found in peripheral blood lymphocytes in humans with expression in NK+ cells, CD4+ and CD8+ T-lymphocytes ([http://www.ncbi.nlm.nih.gov/pubmed/11735227 Vigneau (2001)], [http://www.ncbi.nlm.nih.gov/pubmed/12719555 Vigneau (2003)]). In both mouse and humans Tmevpg1 was down-regulated upon immune cell activation with a reciprocal up-regulation in interferon gamma (Ifng) expression [http://www.ncbi.nlm.nih.gov/pubmed/12719555 (Vigneau (2003))]. <br />
<br />
===Conservation===<br />
Present in mouse and human. Sequence conservation is limited to the promoter, first exons and its splice site, otherwise the transcripts are poorly conserved and can contain repeat elements [http://www.ncbi.nlm.nih.gov/pubmed/11735227 (Vigneau (2001))].<br />
<br />
===Misc===<br />
The Tmevpg3 genetic locus was found to control persistence of Theiler's virus in the central nervous system, along with the H-2D gene, this QTL locus was found to be near but exclude the interferon gamma (Ifng) gene [http://www.ncbi.nlm.nih.gov/pubmed/10224268 (Bihl (1999))].<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = ENST00000538665.1|<br />
source = Gencode19|<br />
same = lnc-DYRK2-4:1|<br />
classification = intergenic|<br />
length = 1791 nt|<br />
location = chr12+:68383225..68415107|<br />
number = 4|<br />
exons = 68383225..68383359,68389721..68389853,68399870..68399926,68413642..68415107|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr12:68383225..68415107&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CTGCAATTTCAGGTAGCTTTTCTGACTCTTAAAGAGATCTCAAGTATACCTTCAGAGAAATGCCAGCAAAAACTGTAGTCATTTGGGAAGGAATAAGCCTGGAAGAAAAAGATACAACGAACTAGCACAACGAGGAGTTTGAAAAGTTCATGACAGCTCACAGCTGATGATGGTGGCAATCTTAAGGATACAGAAAGCTCATTCCTCATGCAGGGAAGAAGAAAATATTCTAAAGAAGAGATAAGCATATTCCATGAAATCAAAAAAGCGTAAAACGCTGGAGGAGAAGTCAGTAGCAAGCAGCTAAGACAACATGGTACATGTGGCTAGAAGCCCACCAACTGCTAACAACCAGCTGGAGGGTAAGTCAAAAGCTATGAGAGCCCAGAAGGAGAACAATTATTTAGACCTGGAGGGGCCAGTTGGGAAAGTCTTTGAAGGGTCTTCAGAAAATGGACCAAAAGAAAAGAGGAAAAGTCATTCTACTGAGAGGTGTTTGTGTAATCAAAGCAACCGAGGCCTAAGAACTCACAAAAGATTAGAAAAGGGTAAAGGATGCCTGGAAAGCCGGACTAGGAAAAGGCTGTGAAGGGCCCTGAAGGTCACATGTCACATGTTGCCTGCAGCATGCAGAATCAAAACATGATAAATCATGTCTTGAATCATGACATATGAAGCATGACACACGAATCATGACATGTGACATGTTGAATGTCACATGTCACATGCCGTAGGCAGCCATCAAGAGTATTTGAAAGGAAAGTGTATAATCAGGCCTGTGCTTTAGTAAGACAATTTGTATAGTGTTCAGTGTGGATTAAAATGGAGAACACAGGTATCAGTTTGACATCGACAGTACAGGAAACCATTTGGGTTTCTTGTACACCAAAATATTAAAACATACACGCAAACACACCAACACATTAAAATCTTGAGAGAGAGGGCCAAAAGTTCTTTGTCGCTGGACTAAAAGTGGAAATAAATGTTTACAACCTCTAAGGTGGATTAAGCTAAGAATTTGGAGTTGTTGGCAAAACTGCCACATAAAATTTCAGACATGCAAAGAAATGCAATCGTAGACTTATGCACATACTTCCACCAGAGAAGGGAATCTGGGCAGAGTGTTCAAAGCTTAAGAAATTCCTTTGCTCTTCACCAAGAAGAGCCAACAGAGTTTTCGTTGAATCAACTCTTATATTCCCTTAAAAAGAAGTTGATAGTGTTGTGGAAAACTCACCCATTGAAGTGACAACAAAAACAGCAACCCAGTATGAGTTAACTGGTATTATGTTAAAGGGACAAGTAACTGCACTTTTGACACACATCCTCTAAAAGGTAGGGTGGGAGTGTTTCAAAGAACCAAGTCTGAGTAATAGAAAAGCATATACCACTTCCCCATATACACGTTCGAGCATGGGGGAGCAGGAAGCTGGGTAATTGAATGCAGTTGTGCACACTGGCAATTTTCCCGCCACATACCATTTCTTCGGTGTCTCTCCCAAAATTCTCCTCCTAAGTGGCACATCCCTTTATTGATCATCTTTCCCCATACTGATCATCCTCAGCAATCATGTGAGTTATTAGTCTAAGTATTTGTTTTTCTCAAATATGGTCTTTTAACTACTCCCTAAATATTTTATATATACATAGTTTGTTTTCCCAATTTAACTACAAGCATTTAAAAAATGGGAATATTTGTCTATATTTCTGTAATTTTTCATCATGCCTTATATGGTATATAAAGATCAACAGCAATAAAACAACAACAGTAATAATAGCTAAGACCTTTTG</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT035776&diff=890580NONHSAT0357762014-10-11T01:25:10Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
TEA ncRNAs: T early alpha<br />
<br />
===Characteristics===<br />
TEA ncRNAs transcripts originate from the TEA ncRNAs promoter at the 5' of the array of joining (J) gene segments of the T-cell receptor alpha chain (TCRA) [http://www.ncbi.nlm.nih.gov/pubmed/3500476 (de Villartay (1987))]. Another noncoding transcript has been identified coming from a promoter within the J array (J-alpha 49).<br /> TEA ncRNAs transcription extends up to ~71kb, covering the length of the J array and terminating in the C alpha region [http://www.ncbi.nlm.nih.gov/pubmed/3500476 (de Villartay (1987))]. . Full length of actual spliced TEA ncRNAs transcript reported as ~2kb [http://www.ncbi.nlm.nih.gov/pubmed/3500476 (de Villartay (1987)], [http://www.ncbi.nlm.nih.gov/pubmed/8383995 Shimizu (1993)]). ~4.5 and 8kb transcripts have also been reported. Transcripts generally include TEA ncRNAs sequence spliced to C alpha and sometimes include J segments [http://www.ncbi.nlm.nih.gov/pubmed/9247569 (Villey (1997))]. <br />
<br />
===Function===<br />
TEA ncRNAs transcription regulates V alpha-to-J alpha recombination and is necessary to generate the full complement of recombined segments ([http://www.ncbi.nlm.nih.gov/pubmed/16936730 Abarrategui (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17882258 Abarrategui (2007)]).<br /> Transcription has both activating and repressive effects on the promoters of different J segments. Segments only a small distance downstream from the TEA ncRNAs promoter are activated while segments more distal are repressed, with alterations in histone modifications and chromatin accessibility ([http://www.ncbi.nlm.nih.gov/pubmed/16936730 Abarrategui (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17882258 Abarrategui (2007)]).<br /> These effects target initial recombination events to the active proximal J segments. In the absence of TEA ncRNAs ncRNA transcription recombination occurs in more distal J segments which are normally repressed ([http://www.ncbi.nlm.nih.gov/pubmed/16936730 Abarrategui (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17882258 Abarrategui (2007)]).<br /> Repressive effects of the TEA ncRNAs ncRNA suggested to be due to transcriptional interference. Unknown if TEA ncRNAs ncRNA also has a function itself, ie: recruitment of chromatin modification complexes ([http://www.ncbi.nlm.nih.gov/pubmed/16936730 Abarrategui (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17882258 Abarrategui (2007)]).<br />
<br />
===Expression===<br />
Expressed during thymocyte development at a time recombination is occurring ([http://www.ncbi.nlm.nih.gov/pubmed/16936730 Abarrategui (2006)], [http://www.ncbi.nlm.nih.gov/pubmed/17882258 Abarrategui (2007)]). Expression is highest in fetal thymocytes and is absent in mature adult T cells ([http://www.ncbi.nlm.nih.gov/pubmed/3500476 de Villartay (1987)], [http://www.ncbi.nlm.nih.gov/pubmed/8383995 Shimizu (1993)]).<br /> TEA ncRNAs transcripts have been identified in the nucleus [http://www.ncbi.nlm.nih.gov/pubmed/17882258 (Abarrategui (2007))].<br />
<br />
===Conservation===<br />
Humans and mouse ([http://www.ncbi.nlm.nih.gov/pubmed/3500476 de Villartay (1987)], [http://www.ncbi.nlm.nih.gov/pubmed/8383995 Shimizu (1993)]).<br />
<br />
===Misc===<br />
V(D)J recombination acts to assemble the variable regions of T cell receptors from germline variable (V), diversity (D) and joining (J) gene segments.<br /> RNA accessions from [http://www.ncbi.nlm.nih.gov/pubmed/3500476 de Villartay (1987)] and [http://www.ncbi.nlm.nih.gov/pubmed/8383995 Shimizu (1993)] some are spliced some are not.<br /> Human 147: GenBank: M18204.1. Human 147A1: GenBank: M18206.1. Human 147A19: GenBank: M18205.1. Mouse T early alpha (TEA ncRNAs) region: GenBank: D13547.1<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT035776|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intergenic|<br />
length = 506 nt|<br />
location = chr14+:22942568..23016567|<br />
number = 2|<br />
exons = 22942568..22942930,23016447..23016567|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr14:22942568..23016567&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GAATTCATGTCTTACGGTCAAGGGCTAGAGAAAGGATTTCTGCATCACTTTCTTCCTGTAGCAATTCCATCCGAGATCCCTGGGACAGACCTGGCCTGATGAATAGCAGGAAGCACACCAGGGAGGGACAAGGTCCTGCAGACAACCTTCACCACCAGGCTGGGACAGCGCCATGGGGACCCAGGGCCTCTGCTTTGGGGAAAGACCTTGCTGAGGGGCCCCATGGGCAAGAACAAGTGTGAAGAACCCTACTATGGTTTTTTGCCCAATGCCCTCCACAAAGCCAGCGTTTGAAGGAAAACTGTGAGGAAGAAGGGACACTCCATGGTGTTGTTGTTGCCACCTCTGGAGCAGCCTGTAGCAAGAACAGTCTTGGTCCAACCAGATATCCAGAAGCCTGACCCTGCCGTGTACCAGCTGAGAGACTCTAAATCCAGTGACAAGTCTGTCTGCCTATTCACCGATTTTGATTCTCAAACAAATGTGTCACAAAGTAAGGATTCTGA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-SRA1-1:1&diff=890579Lnc-SRA1-1:12014-10-11T01:23:37Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
SRA: Steroid receptor RNA Activator<br />
<br />
===Characteristics===<br />
Bifunctional gene, active as an RNA and encodes a conserved protein SRAP (reviewed in [http://www.ncbi.nlm.nih.gov/pubmed/17710122 Leygue (2007)]). SRA has a large number of isoforms, most of which share a central core region. Only some isoforms are also able to encode the SRAP protein, and differential splicing may be one mechanism of generating coding and noncoding isoforms of SRA [http://www.ncbi.nlm.nih.gov/pubmed/16848684 (Hube (2006))] (reviewed in [http://www.ncbi.nlm.nih.gov/pubmed/17710122 Leygue (2007)]). A number of functional motifs, with predicted secondary structures, are required for SRA RNA function [http://www.ncbi.nlm.nih.gov/pubmed/12444263 (Lanz (2002))]. <br />
<br />
===Function===<br />
Forms ribonucleoprotein complexes with a number of nuclear receptors (including many steroid hormone receptors) generally acting to stimulate transcriptional activation ([http://www.ncbi.nlm.nih.gov/pubmed/10199399 Lanz (1999)], [http://www.ncbi.nlm.nih.gov/pubmed/17710122 Leygue (2007)]). Interacts either directly or through a complex with a number of other co-activator and repressor proteins, such as SRC-1, Sharp, SLIRP and p68 and p72 RNA helicases. SRA has been suggested to act as a scaffold for these complexes (reviewed in [http://www.ncbi.nlm.nih.gov/pubmed/17710122 Leygue (2007)]). Transgenic expression of SRA in vivo caused hyperplasia and morphological abnormalities in steroid hormone responsive tissues. Hyperplasia was accompanied by higher apoptosis however and expression of SRA did not lead to tumourigenesis [http://www.ncbi.nlm.nih.gov/pubmed/14517287 (Lanz (2003))]. Associated with cardiomyopathy in humans, a role in heart development was validated in zebrafish but it's unclear if SRAP or SRA or both is responsible [http://www.ncbi.nlm.nih.gov/pubmed/19064678 (Friedrichs (2009))]. SRA activity is regulated by pseudouridylation ([http://www.ncbi.nlm.nih.gov/pubmed/15327771 Zhao (2004)], [http://www.ncbi.nlm.nih.gov/pubmed/17170069 Zhao (2007)]).<br />
<br />
===Expression===<br />
Expressed in a wide range of tissues, some isoforms appear to have tissue specific expression ([http://www.ncbi.nlm.nih.gov/pubmed/10199399 Lanz (1999)], [http://www.ncbi.nlm.nih.gov/pubmed/14517287 Lanz (2003)]). Up-regulated in tumours of steroid hormone responsive tissues ie: breast, uterus and ovary compared to matched normal tissue ([http://www.ncbi.nlm.nih.gov/pubmed/11103781 Murphy (2000)], [http://www.ncbi.nlm.nih.gov/pubmed/14517287 Lanz (2003)]). Found in the nucleus and the cytoplasm ([http://www.ncbi.nlm.nih.gov/pubmed/14517287 Lanz (2003)], [http://www.ncbi.nlm.nih.gov/pubmed/17170069 Zhao (2007)]).<br />
<br />
===Conservation===<br />
SRA ncRNA conserved in mammals [http://www.ncbi.nlm.nih.gov/pubmed/17710122 (Leygue (2007))]. SRAP Protein is conserved in chordata [http://www.ncbi.nlm.nih.gov/pubmed/15147866 (Chooniedass-Kothari (2004))].<br />
<br />
===Misc===<br />
Some isoforms of SRA encode a conserved protein product SRAP, which is also expressed in normal tissues and breast cancer ([http://www.ncbi.nlm.nih.gov/pubmed/12565891 Emberley (2003)], [http://www.ncbi.nlm.nih.gov/pubmed/15147866 Chooniedass-Kothari (2004)], [http://www.ncbi.nlm.nih.gov/pubmed/16152589 Chooniedass-Kothari (2006)]). Studies show SRAP can also regulate the activity of nuclear receptors and bind to promoter regions regulated by nuclear receptors, suggesting functional similarities between SRA RNA and SRAP ([http://www.ncbi.nlm.nih.gov/pubmed/20398657 Chooniedass-Kothari (2010)], [http://www.ncbi.nlm.nih.gov/pubmed/20153324 Chooniedass-Kothari (2010)]). [http://www.ncbi.nlm.nih.gov/pubmed/17710122 Leygue (2007)] provides a useful review of the literature.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-SRA1-1:1|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intergenic|<br />
length = 1965 nt|<br />
location = chr5-:139929651..139937678|<br />
number = ,|<br />
exons = ,|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr5:139929651..139937678&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GCAGGCACTAAGCTGGGCACTGGGAATGTAATAAAATAGTCAAGGTCCCACCTTCTAAGACTGTCCGACAGGGAAACGAACAAGAGTCAAATAAGGCAGAAGATGTGATGTAATACACCTACGAAATCTCAGAGGGTTGTAGGGTCGTGGGAGCTCAAGTGAGACACTTAACCTGGCCTGAGACATTCCAGAAGGCCTCCTGAAGAACTGACATCTGAACTGAGAACTGAAGGAAGATGAGTACTAGTGAGGCTACCGGACGTGAATGTGGAGATTGTGCAGGGCAATGCAAGAGGAGGCTGTAGAAGTCAACCTGGCTAGATCACAGCGGGGTGTATGTGGGGCAGGAGCTTCTTTGTTTGAATTTGCTCCTGAGAGGATGAGGCCTCCTAGAGCACTGGCTCCTGGACAGCAACCTCCTTTGGTGCCTTGTGACCAGGGCCCTGATGGTTCATTAGATGGAGCCTTCGAGTCTTAGGGAGTTGCCGCAGGGTCCCCACAGCGGCTCCCGACGGTTGTGAACCAGCATCCATCCTCCACGGATTCCGGCAACCCGCCTGGCCCTGGACGTGTCTCAACTGGCCCGCGTGAGGGGCCGCCCCGGAAATGACGCGCTGCCCCGCTGGCCAAGCGGAAGTGGAGATGGCGGAGCTGTACGTGAAGCCGGGCAACAAGGAACGCGGCTGGAACGACCCGCCGCAGTTCTCATACGGGCTGCAGACCCAGGCCGGCGGACCCAGGCGCTCGCTGCTTACCAAGAGGGTCGCCGCACCCCAGGATGGATCCCCCAGAGTCCCCGCATCAGAGACTTCTCCTGGGCCTCCCCCAATGGGGCCTCCACCTCCTTCAAGTAAGGCTCCCAGGTCCCCACCTGTGGGGAGTGGTCCTGCCTCTGGCGTGGAGCCCACAAGTTTCCCAGTCGAGTCTGAGGCTGTGATGGAGGATGTGCTGAGACCTTTGGAACAGGCATTGGAAGACTGCCGTGGCCACACAAGGAAGCAGGTATGTGATGACATCAGCCGACGCCTGGCACTGCTGCAGGAACAGTGGGCTGGAGGAAAGTTGTCAATACCTGTAAAGAAGAGAATGGCTCTACTGGTGCAAGAGCTTTCAAGCCACCGGTGGGACGCAGCAGATGACATCCACCGCTCCCTCATGGTTGACCATGTGACTGAGGTCAGTCAGTGGATGGTAGGAGTTAAAAGATTAATTGCAGAAAAGAGGAGTCTGTTTTCAGAGGAGGCAGCCAATGAAGAGAAATCTGCAGCCACAGCTGAGAAGAACCATACCATACCAGGCTTCCAGCAGGCTTCATAATCCTCGGTTCCCCAGACTCACCGGACACCATCTCCTATGCCTTGGAGACCTTCTGTCACTTGGCTCCCTTCTTACCACCACCAAGACTGTCCCACTGGGCCTGACCCACCTATGAGGGAAGAAGTCCCACCTGGGCCAGAGGGAGTTCATGTGTTACTCATAACATGCATTTCAATAAAAACATCTCTGCGGTGGGCCTTGGGTAGGAGAGATGAACCCTTCCGGTGCCAAGCTAGTCCCCTCTGGTGTCCTCGACTGCCCTGCTCCCTGTGTATCTGCAAACCTCTGTTCTCCCTTCTCCATTCATCAGGAAGGGATCTGCTGGGTAAAGTCAGACTACTGCCTACCACTTTTTCCCAAAGTAGACTGAAAGCACATCCTGTGCTGGGCGGAGCAGCTGTGTTTGGATGGTTTCATTTCAGCATGAGAACAGACTCAAATAGAACGGGGAGACTTTTCCCTCAACAAAAGGAAAGACAGTCCTATTTGCACTGTATCACCCTTGAGATACTACTGTTACAGAGATTAGAACCACATTGAGTGGGGTTTTCTGTGTAAATCGAAGGAGAAAAAGACCAGATTACTGAGATTGGGGATTGTAACTCTGACTTGCCAAACAAACTGCTGCCTCAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-NDFIP1-3:1&diff=890578Lnc-NDFIP1-3:12014-10-11T01:21:56Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
SPRY4 intronic transcript 1 (non-protein coding)<br />
<br />
===Characteristics===<br />
Single exon ~700 nt transcript expressed in sense direction from the 2nd intron in SPRY4. Contains a SINE at 5' end. Secondary structure predicted to contain several long hairpins and multiple pseudoknots. <br />
<br />
===Function===<br />
Knockdown of SPRY4-IT1 in melanoma cells lines decreased cell viability, increased cell apoptosis. SPRY4-IT1 impacts cell invasion and cell mobility with decreased invasion and motility in SPRY4-IT1 knockdown cells and increased mobility (faster speed of migration) in SPRY4-IT1 over-expressing cell lines. <br />
Conservation Not well conserved outside of primate, with 5' SINE element and predicted secondary structural elements only present in primates. <br />
<br />
===Expression===<br />
Expression significantly up-regulated in melanoma cell lines and patient tumour samples (both primary and metastatic) compared to melanocytes and keratinocytes. SPRY4-IT1 showed much greater expression variation across 20 human tissue than SPRY4. Both showed positively correlated expression and depending on the tissue either could be more highly expressed than the other. Knockdown of SPRY4-IT1 did not affect expression levels of SPRY4, validating that the two transcripts are independent. Localized predominately in the cytoplasm. Larger punctate nuclear signal could be transcription sites. <br />
<br />
===Conservation===<br />
Not well conserved outside of primate, with 5' SINE element and predicted secondary structural elements only present in primates. <br />
<br />
===Misc===<br />
SPRY4 protein coding gene is also more highly expressed in melanoma cells and patient samples compared to melanocytes. It is unclear if SPRY4-IT1 has a separate promoter or is transcribed as part of the SPRY4 transcript.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-NDFIP1-3:1|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intronic(AS)|<br />
length = 708 nt|<br />
location = chr5+:141697198..141697887|<br />
number = ,|<br />
exons = ,|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr5:141697198..141697887&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>GTAGAGATGGGGGTTTCATCCTGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCTGCCTACCTTGGCCTCCCAAAAGGCTGAGATTACAGGCATGAGCCACTGCGCCAGGCCTTCTTTCTTTTCTTTTTTTCTTTCTTTTTTTTTTTTGAGACATCATTTAGCTGTGCTGAGGGGTTCTTAAATAGGCAGCTCAGAAAATTGTTTTCCTTTGTCAGCCACATAAATTCAGCAGAGGCTCTTGGAGGGTCCCTGCTGGTGAGGGGTGAGGCCAGCAGTGGAACTCTGATTTGGTTTTTGCTGAGCTGGTGGTTGAAAGGAATCCTACTACATCGGGGTTATAATAGGGAAGATACATTTTAGAATATGCCCAGTGGAGCCATCGGATGCTGCATCGTCCCCAGAGAGCCAAGTCATCGTGGGCCAAGCTCCCATCCCCATGTCTGGCCTCAACTGCAGGCCCAGAATGTTGACAGCTGCCTCTTGGAGGGTTATGGGAGCCTGTGAATGCCAACATCCCCATTTGCCTGCAGCGGCTGCTCCCATCCTGGCTTCCTGGTGGGACTTTTCCATGAATTGGGGAATCTGCTTTCTGATTCCAAGGCCTATTAAAATTTCTGAGCATTGCCCATTTCTTTTGCTTTATCTGTAGGACATGGGCTGTTTTTAAAGAACCTCACAAATGAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intronic(AS)]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-TCF24-2:3&diff=890577Lnc-TCF24-2:32014-10-11T01:20:20Z<p>124.202.190.20: /* Annotated Information */</p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
SNHG6: Small nucleolar RNA host gene 6<br />
<br />
===Characteristics===<br />
Spliced transcript with U87 snoRNA in second intron. ~0.5kb transcript. Transcriptional start site has characteristics of 5' TOP gene family.<br />
<br />
===Function===<br />
Unknown, however the authors point out that 5' TOP family genes are important for translation and that ribosomal associated SNHGs could be involved in this process as well.<br />
<br />
===Expression===<br />
Broad expression in human and mouse tissues. Localises mostly to the cytoplasm. Human transcript found to show greater stability that SNHG1 in Hela cells [http://www.ncbi.nlm.nih.gov/pubmed/16226852 (Makarova (2005))]. Also found to be quite stable in human B cells with a half-life of 7 hr, while mouse Snhg6 was significantly less stable (half-life 2.2hrs in 3T3 cells), suggesting the transcripts may have different stabilities between species ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/22406755 Clark (2012)]). Minority of SNHG6 associates with monosomes. Blocking translation led to a very modest increase in SNHG6 levels, in contrast to SNHG1 (which showed a large increase in transcript level) suggesting it is not very sensitive to nonsense mediated decay. This may help explain its increased stability. <br />
<br />
===Conservation===<br />
Host gene sequence shows more conservation between species than other SNHG RNAs with conservation similar to levels of mRNA 3'UTRs. Conserved between human, mouse, rat and dog.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-TCF24-2:3|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intergenic|<br />
length = 472 nt|<br />
location = chr8-:67834165..67837777|<br />
number = 4|<br />
exons = 67834165..67834349,67834559..67834627,67834849..67834960,67837672..67837777|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr8:67834165..67837777&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CCTTTCCCGCGCGACCGGCGAGGGAGGAAGAAGCGCGAAGAGCCGTTAGTCATGCCGGTGTGGTGGCGGCGGCGGAGACTGCGGGCCCGTAGCTGGGCTCTGCGAGGTGCAAGAAAGCCTTTGAGGTGAAGGTGTATGAAAGTCATCATAACAGATGTTTTCCAAAAACTTGTAGAAGGTTGTGAAAAAACTACTAGGATCACGCGGCATGTATTGAGCATATAGGTTGCTGTAGATGAATGTTCTTAGCTGTCATGTTTAAAAATACTTCTGCTTCGTTACCTCAAGTGTGGCATGCAGCATTTTGGAAGGAAAATTGAAGACGTGTTCAAGAAAACATGAACAGAAGCAAATGATGAAAATGAGCATTTTACTTGATGTTGATAACATCACAATAAATTATGGAGAAAAATACATATTTGGCTAACTTTTAATTGCTGAACAATAAAGTGTTTTCTTTTAAATCAACTCT</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=Lnc-TCF24-2:3&diff=890576Lnc-TCF24-2:32014-10-11T01:20:00Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
SNHG6: Small nucleolar RNA host gene 6<br />
<br />
===Characteristics===<br />
Spliced transcript with U87 snoRNA in second intron. ~0.5kb transcript. Transcriptional start site has characteristics of 5' TOP gene family.<br />
<br />
===Function===<br />
Unknown, however the authors point out that 5' TOP family genes are important for translation and that ribosomal associated SNHGs could be involved in this process as well.<br />
<br />
===Expression===<br />
Broad expression in human and mouse tissues. Localises mostly to the cytoplasm. Human transcript found to show greater stability that SNHG1 in Hela cells [http://www.ncbi.nlm.nih.gov/pubmed/16226852 (Makarova (2005))]. Also found to be quite stable in human B cells with a half-life of 7 hr, while mouse Snhg6 was significantly less stable (half-life 2.2hrs in 3T3 cells), suggesting the transcripts may have different stabilities between species ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/22406755 Clark (2012)]). Minority of SNHG6 associates with monosomes. Blocking translation led to a very modest increase in SNHG6 levels, in contrast to SNHG1 (which showed a large increase in transcript level) suggesting it is not very sensitive to nonsense mediated decay. This may help explain its increased stability. <br />
<br />
===Conservation===<br />
Host gene sequence shows more conservation between species than other SNHG RNAs with conservation similar to levels of mRNA 3'UTRs. Conserved between human, mouse, rat and dog.<br />
<br />
===Misc===<br />
Please input misc information here.<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = lnc-TCF24-2:3|<br />
source = LNCipedia2.1|<br />
same = ,|<br />
classification = intergenic|<br />
length = 472 nt|<br />
location = chr8-:67834165..67837777|<br />
number = 4|<br />
exons = 67834165..67834349,67834559..67834627,67834849..67834960,67837672..67837777|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr8:67834165..67837777&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CCTTTCCCGCGCGACCGGCGAGGGAGGAAGAAGCGCGAAGAGCCGTTAGTCATGCCGGTGTGGTGGCGGCGGCGGAGACTGCGGGCCCGTAGCTGGGCTCTGCGAGGTGCAAGAAAGCCTTTGAGGTGAAGGTGTATGAAAGTCATCATAACAGATGTTTTCCAAAAACTTGTAGAAGGTTGTGAAAAAACTACTAGGATCACGCGGCATGTATTGAGCATATAGGTTGCTGTAGATGAATGTTCTTAGCTGTCATGTTTAAAAATACTTCTGCTTCGTTACCTCAAGTGTGGCATGCAGCATTTTGGAAGGAAAATTGAAGACGTGTTCAAGAAAACATGAACAGAAGCAAATGATGAAAATGAGCATTTTACTTGATGTTGATAACATCACAATAAATTATGGAGAAAAATACATATTTGGCTAACTTTTAATTGCTGAACAATAAAGTGTTTTCTTTTAAATCAACTCT</dnaseq>|<br />
}}<br />
[[Category:Intergenic]]</div>124.202.190.20https://ngdc.cncb.ac.cn/lncrnawiki1/index.php?title=NONHSAT054526&diff=890575NONHSAT0545262014-10-11T01:18:27Z<p>124.202.190.20: </p>
<hr />
<div>Please input one-sentence summary here.<br />
<br />
==Annotated Information==<br />
===Name===<br />
SNHG5: Small nucleolar RNA host gene 5<br />
<br />
===Characteristics===<br />
Contains U50 and U50-like snoRNAs in introns [http://www.ncbi.nlm.nih.gov/pubmed/10792466 (Tanaka (2000))]. Alternatively spliced transcript [http://www.ncbi.nlm.nih.gov/pubmed/10792466 (Tanaka (2000))]. Refseq isoform is ~0.5kb in humans. Transcriptional start site has characteristics of 5' TOP gene family [http://www.ncbi.nlm.nih.gov/pubmed/10792466 (Tanaka (2000))].<br />
<br />
===Function===<br />
Please input function information here.<br />
<br />
===Expression===<br />
Broadly expressed in human adult tissues. Identified as enriched in the cytoplasm of human GM12878, HepG2, HUVEC and K562 cells bu nuclear enriched in HeLaS3 [http://www.ncbi.nlm.nih.gov/pubmed/22955988 (Derrien (2012))]. RNA is unstable with a half-life <2 hr in mouse N2A (neuroblastoma) and 3T3 cells and a half-life ~2 hr in human B cells ([http://www.ncbi.nlm.nih.gov/pubmed/19561200 Friedel (2009)], [http://www.ncbi.nlm.nih.gov/pubmed/22406755 Clark (2012)]).<br />
Conservation Mouse has two transcripts at syntenic loci which are separated by several hundred kb and contain U50. Some sequence similarity is found between then so it is likely they share a common ancestor [http://www.ncbi.nlm.nih.gov/pubmed/17468437 (Tanaka-Fujita (2007))]. Comparing mouse and human host transcripts revealed they were "dissimilar". It was hypothesized that the host transcripts share a common ancestor but there has been little selection for maintaining the sequence the host gene exons [http://www.ncbi.nlm.nih.gov/pubmed/17468437 (Tanaka-Fujita (2007))]. <br />
<br />
===Conservation===<br />
Please input conservation information here.<br />
<br />
===Misc===<br />
SNHG5 forms a novel translocation breakpoint with Bcl6 in a diffuse large B-cell (DLB) lymphoma, although it is unclear if SNHG5 contributed to malignancy [http://www.ncbi.nlm.nih.gov/pubmed/10792466 (Tanaka (2000))].<br />
<br />
===Transcriptomic Nomeclature===<br />
Please input transcriptomic nomeclature information here.<br />
<br />
<br />
===Regulation===<br />
Please input regulation information here.<br />
<br />
===Allelic Information and Variation===<br />
Please input allelic information and variation information here.<br />
<br />
===Evolution===<br />
Please input evolution information here.<br />
<br />
You can also add sub-section(s) at will.<br />
<br />
==Labs working on this lncRNA==<br />
Please input related labs here.<br />
<br />
==References==<br />
Please input cited references here.<br />
<br />
{{basic|<br />
tID = NONHSAT054526|<br />
source = NONCODE4.0|<br />
same = ,|<br />
classification = intronic(S)|<br />
length = 524 nt|<br />
location = chr17-:47416677..47417192|<br />
number = 1|<br />
exons = 47416677..47417192|<br />
context = <html><div align="center"><br />
<iframe src="http://lncrna.big.ac.cn/view/?data=species/human&loc=chr17:47416677..47417192&tracklist=0&overview=0&tracks=DNA,RefGene,lncRNA" style=" border-width:0 " width="100%" height="250" scrolling="yes"></iframe><br />
</div></html>|<br />
sequence = <dnaseq>CTTTTACGTCGGCCTTCGCGAGCGTCTGGGCGGGTGGTAGGAACAATGGCGCTGTCTTCAGTGGCACAGTGGAGCAGCTCTGAAGATGCAAAGATACACGAAAAAACTTCCAGAACATCTGGGAGAATATTTAATGGAAAATCGCTTGGTTAAAACCTGACACTTTTAACAGTGAACAGCGTTCTGAGTGTGGACGAGTAGCCAGTGAAGATAATGAATGTCGAATGTGACTGACTAGCAGCTTCATTTTGAATGAGGGTCGCTGTCTGCCCATTGATAGAGGCCAGATTGTCTTGGAAGTTCCAAAGTTGCAACGATTTCTGGCTAGTGCCACGAGGTTTACTTGACTGTTGTGTGAAAAGCTGATAAGAAAACCATCCAGAAAAAAGCTCTTCGTTTTACAAACATGAAAATAAAACATGTAATTTTGGATTATGTTCCTTTTTGTTATTACTTTTAAATAGGTCCTGAAATAACATGGGGAGCATTAAATGGAAAATCCACTAAAAAAAAAAAAAAAAAAA</dnaseq>|<br />
}}<br />
[[Category:Intronic(S)]]</div>124.202.190.20